Index

_

__init__() (bkbit.data_translators.genome_annotation_translator.Gff3 method) __merge_values() (bkbit.data_translators.genome_annotation_translator.Gff3 method)

_get_attribute() (bkbit.data_translators.genome_annotation_translator.Gff3 method) _resolve_ncbi_gene_annotation() (bkbit.data_translators.genome_annotation_translator.Gff3 method)

A

aar (bkbit.models.donor.Language attribute) Abbreviation (class in bkbit.models.cell_taxonomy) AbbreviationEntityType (class in bkbit.models.cell_taxonomy) Abdominal_wall_defect (bkbit.models.donor.CauseOfDeath attribute) abk (bkbit.models.donor.Language attribute) Abortion (bkbit.models.donor.CauseOfDeath attribute) accepts() (in module bkbit.data_translators.ait_taxonomy_translator) accession_id (bkbit.models.cell_taxonomy.CellTypeTaxon attribute) (bkbit.models.cell_taxonomy.CellTypeTaxonomy attribute) accidental (bkbit.models.donor.MannerOfDeath attribute) ace (bkbit.models.donor.Language attribute) Acetaminophen (bkbit.models.donor.DrugsFound attribute) Acetone (bkbit.models.donor.DrugsFound attribute) Acetyl_Fentanyl (bkbit.models.donor.DrugsFound attribute) ach (bkbit.models.donor.Language attribute) Acrylfentanyl (bkbit.models.donor.DrugsFound attribute) Activity (class in bkbit.models.anatomical_structure) (class in bkbit.models.cell_taxonomy) (class in bkbit.models.donor) (class in bkbit.models.genome_annotation) (class in bkbit.models.library_generation) ActivityAndBehavior (class in bkbit.models.anatomical_structure) (class in bkbit.models.cell_taxonomy) (class in bkbit.models.donor) (class in bkbit.models.genome_annotation) (class in bkbit.models.library_generation) acute_infarct (bkbit.models.donor.VascularType attribute) AD (bkbit.models.donor.BirthCountry attribute) ada (bkbit.models.donor.Language attribute) adding_template() (in module bkbit.model_converters.sheets_converter) adipose (bkbit.models.donor.Tissue attribute) adrenal (bkbit.models.donor.Tissue attribute) ady (bkbit.models.donor.Language attribute) AE (bkbit.models.donor.BirthCountry attribute) AF (bkbit.models.donor.BirthCountry attribute) afa (bkbit.models.donor.Language attribute) afh (bkbit.models.donor.Language attribute) afr (bkbit.models.donor.Language attribute) aFULL_STOP_Hodgkin_lymphoma (bkbit.models.donor.CauseOfDeath attribute) aFULL_STOP_Lip_and_oral_cavity_cancers (bkbit.models.donor.CauseOfDeath attribute) aFULL_STOP_Malignant_skin_melanoma (bkbit.models.donor.CauseOfDeath attribute) AG (bkbit.models.donor.BirthCountry attribute) age_at_death_reference_point (bkbit.models.donor.Donor attribute) age_at_death_unit (bkbit.models.donor.Donor attribute) age_at_death_value (bkbit.models.donor.Donor attribute) age_of_death (bkbit.models.donor.Donor attribute) AgeAtDeathReferencePoint (class in bkbit.models.library_generation) AgeAtDeathUnit (class in bkbit.models.library_generation) aging_type (bkbit.models.donor.Donor attribute) AgingType (class in bkbit.models.donor) AI (bkbit.models.donor.BirthCountry attribute) ain (bkbit.models.donor.Language attribute) aka (bkbit.models.donor.Language attribute) akk (bkbit.models.donor.Language attribute) AL (bkbit.models.donor.BirthCountry attribute) alb_LEFT_PARENTHESISBRIGHT_PARENTHESIS (bkbit.models.donor.Language attribute) Alcohol_use_disorders (bkbit.models.donor.CauseOfDeath attribute) ale (bkbit.models.donor.Language attribute) Alfentanil (bkbit.models.donor.DrugsFound attribute) alg (bkbit.models.donor.Language attribute) All_Causes (bkbit.models.donor.CauseOfDeath attribute) Alpha_Hydroxyalprazolam (bkbit.models.donor.DrugsFound attribute) Alpha_Hydroxyetizolam (bkbit.models.donor.DrugsFound attribute) alpha_PVP (bkbit.models.donor.DrugsFound attribute) alpha_synuclein (bkbit.models.donor.NeurodegenerativeType attribute) Alprazolam (bkbit.models.donor.DrugsFound attribute) alt (bkbit.models.donor.Language attribute) Alzheimer_and_other_dementias (bkbit.models.donor.CauseOfDeath attribute) Alzheimers_disease (bkbit.models.donor.ConditionType attribute) AM (bkbit.models.donor.BirthCountry attribute) American_Indian_or_Alaska_Native (bkbit.models.donor.Race attribute) amh (bkbit.models.donor.Language attribute) Amitriptyline (bkbit.models.donor.DrugsFound attribute) Amlodipine (bkbit.models.donor.DrugsFound attribute) Amoxapine (bkbit.models.donor.DrugsFound attribute) Amphetamine (bkbit.models.donor.DrugsFound attribute) amplified_cDNA_quantity_ng (bkbit.models.library_generation.AmplifiedCdna attribute) amplified_cDNA_result (bkbit.models.library_generation.AmplifiedCdna attribute) AmplifiedCdna (class in bkbit.models.library_generation) AmplifiedCdnaRnaAmplificationPassFail (class in bkbit.models.library_generation) amyotrophic_lateral_sclerosis_LEFT_PARENTHESISALSRIGHT_PARENTHESIS (bkbit.models.donor.ConditionType attribute) anatomical (bkbit.models.cell_taxonomy.AbbreviationEntityType attribute) anatomical_region (bkbit.models.cell_taxonomy.Cell attribute) anatomical_region_ontology_term_id (bkbit.models.cell_taxonomy.Cell attribute) AnatomicalAnnotationSet (class in bkbit.models.anatomical_structure) (class in bkbit.models.cell_taxonomy) ANATOMICALDIRECTION (class in bkbit.models.anatomical_structure) (class in bkbit.models.cell_taxonomy)

AnatomicalSpace (class in bkbit.models.anatomical_structure) (class in bkbit.models.cell_taxonomy) Anencephaly (bkbit.models.donor.CauseOfDeath attribute) ang (bkbit.models.donor.Language attribute) annotates (bkbit.models.library_generation.DissectionRoiPolygon attribute) Annotation (class in bkbit.models.anatomical_structure) (class in bkbit.models.cell_taxonomy) (class in bkbit.models.donor) (class in bkbit.models.genome_annotation) (class in bkbit.models.library_generation) AnnotationCollection (class in bkbit.models.cell_taxonomy) (class in bkbit.models.genome_annotation) annotations (bkbit.models.cell_taxonomy.AnnotationCollection attribute) (bkbit.models.genome_annotation.AnnotationCollection attribute) Anorectal_atresia (bkbit.models.donor.CauseOfDeath attribute) anp (bkbit.models.donor.Language attribute) AnS (class in bkbit.data_translators.anatomical_structure_translator) antemortem_mri_available (bkbit.models.donor.Donor attribute) anterior_to_posterior (bkbit.models.anatomical_structure.ANATOMICALDIRECTION attribute) (bkbit.models.cell_taxonomy.ANATOMICALDIRECTION attribute) anus (bkbit.models.donor.Tissue attribute) AO (bkbit.models.donor.BirthCountry attribute) aorta (bkbit.models.donor.Tissue attribute) apa (bkbit.models.donor.Language attribute) apgar_10_minute_score (bkbit.models.donor.Donor attribute) apgar_5_minute_score (bkbit.models.donor.Donor attribute) Appendicitis (bkbit.models.donor.CauseOfDeath attribute) appendix (bkbit.models.donor.Tissue attribute) AQ (bkbit.models.donor.BirthCountry attribute) AR (bkbit.models.donor.BirthCountry attribute) ara (bkbit.models.donor.Language attribute) arc (bkbit.models.donor.Language attribute) arg (bkbit.models.donor.Language attribute) Aripiprazole (bkbit.models.donor.DrugsFound attribute) arm_LEFT_PARENTHESISBRIGHT_PARENTHESIS (bkbit.models.donor.Language attribute) arn (bkbit.models.donor.Language attribute) arp (bkbit.models.donor.Language attribute) art (bkbit.models.donor.Language attribute) arteriolosclerosis (bkbit.models.donor.AgingType attribute) artery (bkbit.models.donor.Tissue attribute) artifacts_type (bkbit.models.donor.Donor attribute) ArtifactType (class in bkbit.models.donor) arw (bkbit.models.donor.Language attribute) AS (bkbit.models.donor.BirthCountry attribute) Ascariasis (bkbit.models.donor.CauseOfDeath attribute) ascending_colon (bkbit.models.donor.Tissue attribute) asexual (bkbit.models.donor.SexualOrientation attribute) Asian (bkbit.models.donor.Race attribute) asm (bkbit.models.donor.Language attribute) assay (bkbit.models.cell_taxonomy.Cell attribute) assay_ontology_term_id (bkbit.models.cell_taxonomy.Cell attribute) assembly_accession (bkbit.data_translators.genome_annotation_translator.Gff3 attribute) assembly_strain (bkbit.data_translators.genome_annotation_translator.Gff3 attribute) assign_func_header() (bkbit.data_translators.anatomical_structure_translator.AnS class method) ast (bkbit.models.donor.Language attribute) Asthma (bkbit.models.donor.CauseOfDeath attribute) astrocytes (bkbit.models.donor.Tissue attribute) AT (bkbit.models.donor.BirthCountry attribute) ATACOnly (bkbit.models.library_generation.BarcodedCellSampleTechnique attribute) ataxia (bkbit.models.donor.ConditionType attribute) ath (bkbit.models.donor.Language attribute) atherosclerosis (bkbit.models.donor.AgingType attribute) Atomoxetine (bkbit.models.donor.DrugsFound attribute) Atropine (bkbit.models.donor.DrugsFound attribute) Attribute (class in bkbit.models.anatomical_structure) (class in bkbit.models.cell_taxonomy) (class in bkbit.models.donor) (class in bkbit.models.genome_annotation) (class in bkbit.models.library_generation) AU (bkbit.models.donor.BirthCountry attribute) aus (bkbit.models.donor.Language attribute) authority (bkbit.models.cell_taxonomy.GenomeAnnotation attribute) (bkbit.models.genome_annotation.GenomeAnnotation attribute) AuthorityType (class in bkbit.models.cell_taxonomy) (class in bkbit.models.genome_annotation) autism (bkbit.models.donor.ConditionType attribute) autopsy (bkbit.models.donor.TissueCollectionState attribute) ava (bkbit.models.donor.Language attribute) ave (bkbit.models.donor.Language attribute) average_size_bp (bkbit.models.library_generation.Library attribute) AW (bkbit.models.donor.BirthCountry attribute) awa (bkbit.models.donor.Language attribute) AX (bkbit.models.donor.BirthCountry attribute) aym (bkbit.models.donor.Language attribute) AZ (bkbit.models.donor.BirthCountry attribute) aze (bkbit.models.donor.Language attribute)

B

BA (bkbit.models.donor.BirthCountry attribute) Back_pain (bkbit.models.donor.CauseOfDeath attribute) bad (bkbit.models.donor.Language attribute) bai (bkbit.models.donor.Language attribute) bak (bkbit.models.donor.Language attribute) bal (bkbit.models.donor.Language attribute) bam (bkbit.models.donor.Language attribute) ban (bkbit.models.donor.Language attribute) baq_LEFT_PARENTHESISBRIGHT_PARENTHESIS (bkbit.models.donor.Language attribute) Barbiturates (bkbit.models.donor.DrugsFound attribute) BarcodedCellSample (class in bkbit.models.library_generation) BarcodedCellSampleTechnique (class in bkbit.models.library_generation) bas (bkbit.models.donor.Language attribute) bat (bkbit.models.donor.Language attribute) batch_condition (bkbit.models.cell_taxonomy.CellTypeTaxonomy attribute) BB (bkbit.models.donor.BirthCountry attribute) BD (bkbit.models.donor.BirthCountry attribute) BE (bkbit.models.donor.BirthCountry attribute) bej (bkbit.models.donor.Language attribute) bel (bkbit.models.donor.Language attribute) bem (bkbit.models.donor.Language attribute) ben (bkbit.models.donor.Language attribute) Benign_prostatic_hypertrophy (bkbit.models.donor.CauseOfDeath attribute) Benzodiazepines (bkbit.models.donor.DrugsFound attribute) Benzoylecgonine (bkbit.models.donor.DrugsFound attribute) Benztropine (bkbit.models.donor.DrugsFound attribute) ber (bkbit.models.donor.Language attribute) beta_amyloid (bkbit.models.donor.NeurodegenerativeType attribute) BF (bkbit.models.donor.BirthCountry attribute) bFULL_STOP_Nasopharynx_cancers (bkbit.models.donor.CauseOfDeath attribute) bFULL_STOP_Non_Hodgkin_lymphoma (bkbit.models.donor.CauseOfDeath attribute) bFULL_STOP_Non_melanoma_skin_cancer (bkbit.models.donor.CauseOfDeath attribute) BG (bkbit.models.donor.BirthCountry attribute) BH (bkbit.models.donor.BirthCountry attribute) bho (bkbit.models.donor.Language attribute) BI (bkbit.models.donor.BirthCountry attribute) bi_polar_disorder (bkbit.models.donor.ConditionType attribute) bican_fix() (in module bkbit.model_converters.sheets_converter) BICAN_NBB (bkbit.models.donor.DonorSource attribute) BICAN_UM1 (bkbit.models.donor.DonorSource attribute) bih (bkbit.models.donor.Language attribute) bik (bkbit.models.donor.Language attribute) bin (bkbit.models.donor.Language attribute) biological_father (bkbit.models.donor.RelativeType attribute) biological_mother (bkbit.models.donor.RelativeType attribute) BiologicalEntity (class in bkbit.models.anatomical_structure) (class in bkbit.models.cell_taxonomy) (class in bkbit.models.donor) (class in bkbit.models.genome_annotation) (class in bkbit.models.library_generation) BioType (class in bkbit.models.cell_taxonomy) (class in bkbit.models.genome_annotation) Bipolar_disorder (bkbit.models.donor.CauseOfDeath attribute) birth (bkbit.models.library_generation.AgeAtDeathReferencePoint attribute) Birth_asphyxia_and_birth_trauma (bkbit.models.donor.CauseOfDeath attribute) birth_country_name (bkbit.models.donor.Donor attribute) birth_weight_lbs (bkbit.models.donor.Donor attribute) birth_weight_oz (bkbit.models.donor.Donor attribute) BirthCountry (class in bkbit.models.donor) bis (bkbit.models.donor.Language attribute) bisexual (bkbit.models.donor.SexualOrientation attribute) BJ (bkbit.models.donor.BirthCountry attribute) bkbit module bkbit.data_translators module bkbit.data_translators.ait_taxonomy_translator module bkbit.data_translators.anatomical_structure_translator module bkbit.data_translators.file_manifest_translator module bkbit.data_translators.genome_annotation_translator module bkbit.data_translators.library_generation_translator module bkbit.data_translators.specimen_metadata_translator module bkbit.model_converters module bkbit.model_converters.sheets_converter module bkbit.model_converters.yaml2sheet_converter module bkbit.model_editors module bkbit.model_editors.add_dunderMethods_genomeAnnotation module bkbit.model_editors.linkml_trimmer module bkbit.models module

bkbit.models.anatomical_structure module bkbit.models.cell_taxonomy module bkbit.models.donor module bkbit.models.genome_annotation module bkbit.models.library_generation module bkbit.utils module bkbit.utils.generate_bkbit_id module bkbit.utils.get_ncbi_taxonomy module bkbit.utils.load_json module bkbit.utils.ncbi_taxonomy_cache module bkbit.utils.ncbi_taxonomy_data module bkbit.utils.ncbi_taxonomy_data.build_subset module bkbit.utils.nimp_api_endpoints module bkbit.utils.serialize_to_ttl module bkbit.utils.setup_logger module BL (bkbit.models.donor.BirthCountry attribute) bla (bkbit.models.donor.Language attribute) Black_or_African_American (bkbit.models.donor.Race attribute) bladder (bkbit.models.donor.Tissue attribute) Bladder_cancer (bkbit.models.donor.CauseOfDeath attribute) blankish() (in module bkbit.data_translators.ait_taxonomy_translator) BM (bkbit.models.donor.BirthCountry attribute) BN (bkbit.models.donor.BirthCountry attribute) bnt (bkbit.models.donor.Language attribute) BO (bkbit.models.donor.BirthCountry attribute) bod_LEFT_PARENTHESISTRIGHT_PARENTHESIS (bkbit.models.donor.Language attribute) bone_rib (bkbit.models.donor.Tissue attribute) bos (bkbit.models.donor.Language attribute) both (bkbit.models.donor.Hemisphere attribute) BQ (bkbit.models.donor.BirthCountry attribute) BR (bkbit.models.donor.BirthCountry attribute) bra (bkbit.models.donor.Language attribute) brain (bkbit.models.donor.TissueSource attribute) Brain_and_nervous_system_cancers (bkbit.models.donor.CauseOfDeath attribute) brain_aneurysm (bkbit.models.donor.ConditionType attribute) brain_region_ontology_term_id (bkbit.models.cell_taxonomy.Cell attribute) brain_weight (bkbit.models.donor.Donor attribute) BrainSlab (class in bkbit.models.library_generation) BrainTissueWeightType (class in bkbit.models.donor) bre (bkbit.models.donor.Language attribute) breast (bkbit.models.donor.Tissue attribute) Breast_cancer (bkbit.models.donor.CauseOfDeath attribute) broad_match (bkbit.models.cell_taxonomy.Abbreviation attribute) (bkbit.models.cell_taxonomy.CellTypeTaxon attribute) (bkbit.models.cell_taxonomy.OntologyMappable attribute) Bromazepam (bkbit.models.donor.DrugsFound attribute) Brompheniramine (bkbit.models.donor.DrugsFound attribute) bronchus (bkbit.models.donor.Tissue attribute) BS (bkbit.models.donor.BirthCountry attribute) BT (bkbit.models.donor.BirthCountry attribute) btk (bkbit.models.donor.Language attribute) bua (bkbit.models.donor.Language attribute) bug (bkbit.models.donor.Language attribute) build() (in module bkbit.data_translators.ait_taxonomy_translator) build_full_cache() (in module bkbit.utils.get_ncbi_taxonomy) (in module bkbit.utils.ncbi_taxonomy_cache) build_subset() (in module bkbit.utils.ncbi_taxonomy_data.build_subset) bul (bkbit.models.donor.Language attribute) Buprenorphine (bkbit.models.donor.DrugsFound attribute) Buprenorphine_SOLIDUS_Metabolite (bkbit.models.donor.DrugsFound attribute) Bupropion (bkbit.models.donor.DrugsFound attribute) Bupropion_Metabolite (bkbit.models.donor.DrugsFound attribute) bur_LEFT_PARENTHESISBRIGHT_PARENTHESIS (bkbit.models.donor.Language attribute) Buspirone (bkbit.models.donor.DrugsFound attribute) Butalbital (bkbit.models.donor.DrugsFound attribute) Butorphanol (bkbit.models.donor.DrugsFound attribute) Butylone (bkbit.models.donor.DrugsFound attribute) Butyrylfentanyl (bkbit.models.donor.DrugsFound attribute) BV (bkbit.models.donor.BirthCountry attribute) BW (bkbit.models.donor.BirthCountry attribute) BY (bkbit.models.donor.BirthCountry attribute) by_folded (bkbit.data_translators.ait_taxonomy_translator.GeneIndex attribute) by_symbol (bkbit.data_translators.ait_taxonomy_translator.GeneIndex attribute) by_synonym (bkbit.data_translators.ait_taxonomy_translator.GeneIndex attribute) byn (bkbit.models.donor.Language attribute) BZ (bkbit.models.donor.BirthCountry attribute)

C

CA (bkbit.models.donor.BirthCountry attribute) cad (bkbit.models.donor.Language attribute) cadaveric (bkbit.models.donor.PostmortemMRI attribute) Caffeine (bkbit.models.donor.DrugsFound attribute) cai (bkbit.models.donor.Language attribute) cancer (bkbit.models.donor.ConditionType attribute) Cannabinoids (bkbit.models.donor.DrugsFound attribute) car (bkbit.models.donor.Language attribute) Carbamazepine (bkbit.models.donor.DrugsFound attribute) Carbamazepine_1011_Epoxide (bkbit.models.donor.DrugsFound attribute) Cardiovascular_diseases (bkbit.models.donor.CauseOfDeath attribute) Carfentanil (bkbit.models.donor.DrugsFound attribute) Carisoprodol (bkbit.models.donor.DrugsFound attribute) cat (bkbit.models.donor.Language attribute) Cataracts (bkbit.models.donor.CauseOfDeath attribute) category (bkbit.models.anatomical_structure.Activity attribute) (bkbit.models.anatomical_structure.AnatomicalAnnotationSet attribute) (bkbit.models.anatomical_structure.AnatomicalSpace attribute) (bkbit.models.anatomical_structure.Attribute attribute) (bkbit.models.anatomical_structure.BiologicalEntity attribute) (bkbit.models.anatomical_structure.Checksum attribute) (bkbit.models.anatomical_structure.Dataset attribute) (bkbit.models.anatomical_structure.Entity attribute) (bkbit.models.anatomical_structure.Gene attribute) (bkbit.models.anatomical_structure.Genome attribute) (bkbit.models.anatomical_structure.ImageDataset attribute) (bkbit.models.anatomical_structure.InformationContentEntity attribute) (bkbit.models.anatomical_structure.MaterialSample attribute) (bkbit.models.anatomical_structure.NamedThing attribute) (bkbit.models.anatomical_structure.OrganismTaxon attribute) (bkbit.models.anatomical_structure.ParcellationAtlas attribute) (bkbit.models.anatomical_structure.ParcellationColorScheme attribute) (bkbit.models.anatomical_structure.ParcellationTerm attribute) (bkbit.models.anatomical_structure.ParcellationTerminology attribute) (bkbit.models.anatomical_structure.ParcellationTermSet attribute) (bkbit.models.anatomical_structure.PhysicalEntity attribute) (bkbit.models.anatomical_structure.Procedure attribute) (bkbit.models.anatomical_structure.VersionedNamedThing attribute) (bkbit.models.cell_taxonomy.Abbreviation attribute) (bkbit.models.cell_taxonomy.Activity attribute) (bkbit.models.cell_taxonomy.AnatomicalAnnotationSet attribute) (bkbit.models.cell_taxonomy.AnatomicalSpace attribute) (bkbit.models.cell_taxonomy.Attribute attribute) (bkbit.models.cell_taxonomy.BiologicalEntity attribute) (bkbit.models.cell_taxonomy.Cell attribute) (bkbit.models.cell_taxonomy.CellTypeSet attribute) (bkbit.models.cell_taxonomy.CellTypeTaxon attribute) (bkbit.models.cell_taxonomy.CellTypeTaxonomy attribute) (bkbit.models.cell_taxonomy.Checksum attribute) (bkbit.models.cell_taxonomy.Cluster attribute) (bkbit.models.cell_taxonomy.ClusterSet attribute) (bkbit.models.cell_taxonomy.ColorPalette attribute) (bkbit.models.cell_taxonomy.Dataset attribute) (bkbit.models.cell_taxonomy.DisplayColor attribute) (bkbit.models.cell_taxonomy.Embedding attribute) (bkbit.models.cell_taxonomy.Entity attribute) (bkbit.models.cell_taxonomy.ExpressionMatrix attribute) (bkbit.models.cell_taxonomy.Gene attribute) (bkbit.models.cell_taxonomy.GeneAnnotation attribute) (bkbit.models.cell_taxonomy.Genome attribute) (bkbit.models.cell_taxonomy.GenomeAnnotation attribute) (bkbit.models.cell_taxonomy.GenomeAssembly attribute) (bkbit.models.cell_taxonomy.ImageDataset attribute) (bkbit.models.cell_taxonomy.InformationContentEntity attribute) (bkbit.models.cell_taxonomy.MaterialSample attribute) (bkbit.models.cell_taxonomy.NamedThing attribute) (bkbit.models.cell_taxonomy.OrganismTaxon attribute) (bkbit.models.cell_taxonomy.ParcellationAtlas attribute) (bkbit.models.cell_taxonomy.ParcellationColorScheme attribute) (bkbit.models.cell_taxonomy.ParcellationTerm attribute) (bkbit.models.cell_taxonomy.ParcellationTerminology attribute) (bkbit.models.cell_taxonomy.ParcellationTermSet attribute) (bkbit.models.cell_taxonomy.PhysicalEntity attribute) (bkbit.models.cell_taxonomy.Procedure attribute) (bkbit.models.cell_taxonomy.RelativeFrequencyAnalysisResult attribute) (bkbit.models.cell_taxonomy.StudyResult attribute) (bkbit.models.cell_taxonomy.VersionedNamedThing attribute) (bkbit.models.donor.Activity attribute) (bkbit.models.donor.Attribute attribute) (bkbit.models.donor.BiologicalEntity attribute) (bkbit.models.donor.Dataset attribute) (bkbit.models.donor.Donor attribute) (bkbit.models.donor.Entity attribute) (bkbit.models.donor.Gene attribute) (bkbit.models.donor.Genome attribute) (bkbit.models.donor.InformationContentEntity attribute) (bkbit.models.donor.MaterialSample attribute) (bkbit.models.donor.NamedThing attribute) (bkbit.models.donor.OrganismTaxon attribute) (bkbit.models.donor.PhysicalEntity attribute) (bkbit.models.donor.Procedure attribute) (bkbit.models.donor.RelativeFrequencyAnalysisResult attribute) (bkbit.models.donor.StudyResult attribute) (bkbit.models.genome_annotation.Activity attribute) (bkbit.models.genome_annotation.Attribute attribute) (bkbit.models.genome_annotation.BiologicalEntity attribute) (bkbit.models.genome_annotation.Checksum attribute) (bkbit.models.genome_annotation.Dataset attribute) (bkbit.models.genome_annotation.Entity attribute) (bkbit.models.genome_annotation.Gene attribute) (bkbit.models.genome_annotation.GeneAnnotation attribute) (bkbit.models.genome_annotation.Genome attribute) (bkbit.models.genome_annotation.GenomeAnnotation attribute) (bkbit.models.genome_annotation.GenomeAssembly attribute) (bkbit.models.genome_annotation.InformationContentEntity attribute) (bkbit.models.genome_annotation.MaterialSample attribute) (bkbit.models.genome_annotation.NamedThing attribute) (bkbit.models.genome_annotation.OrganismTaxon attribute) (bkbit.models.genome_annotation.PhysicalEntity attribute) (bkbit.models.genome_annotation.Procedure attribute) (bkbit.models.genome_annotation.RelativeFrequencyAnalysisResult attribute) (bkbit.models.genome_annotation.StudyResult attribute) (bkbit.models.genome_annotation.VersionedNamedThing attribute) (bkbit.models.library_generation.Activity attribute) (bkbit.models.library_generation.AmplifiedCdna attribute) (bkbit.models.library_generation.Attribute attribute) (bkbit.models.library_generation.BarcodedCellSample attribute) (bkbit.models.library_generation.BiologicalEntity attribute) (bkbit.models.library_generation.BrainSlab attribute) (bkbit.models.library_generation.CdnaAmplification attribute) (bkbit.models.library_generation.CellBarcoding attribute) (bkbit.models.library_generation.CellDissociation attribute) (bkbit.models.library_generation.CellEnrichment attribute) (bkbit.models.library_generation.Checksum attribute) (bkbit.models.library_generation.Dataset attribute) (bkbit.models.library_generation.DigitalAsset attribute) (bkbit.models.library_generation.DissectionRoiDelineation attribute) (bkbit.models.library_generation.DissectionRoiPolygon attribute) (bkbit.models.library_generation.DissociatedCellSample attribute) (bkbit.models.library_generation.Donor attribute) (bkbit.models.library_generation.EnrichedCellSample attribute) (bkbit.models.library_generation.EnrichedCellSampleSplitting attribute) (bkbit.models.library_generation.Entity attribute) (bkbit.models.library_generation.Gene attribute) (bkbit.models.library_generation.Genome attribute) (bkbit.models.library_generation.InformationContentEntity attribute) (bkbit.models.library_generation.Library attribute) (bkbit.models.library_generation.LibraryAliquot attribute) (bkbit.models.library_generation.LibraryConstruction attribute) (bkbit.models.library_generation.LibraryPool attribute) (bkbit.models.library_generation.LibraryPooling attribute) (bkbit.models.library_generation.MaterialSample attribute) (bkbit.models.library_generation.NamedThing attribute) (bkbit.models.library_generation.OrganismTaxon attribute) (bkbit.models.library_generation.PhysicalEntity attribute) (bkbit.models.library_generation.Procedure attribute) (bkbit.models.library_generation.RelativeFrequencyAnalysisResult attribute) (bkbit.models.library_generation.StudyResult attribute) (bkbit.models.library_generation.TissueDissection attribute) (bkbit.models.library_generation.TissueSample attribute) (bkbit.models.library_generation.VersionedNamedThing attribute) cau (bkbit.models.donor.Language attribute) CauseOfDeath (class in bkbit.models.donor) CC (bkbit.models.donor.BirthCountry attribute) CD (bkbit.models.donor.BirthCountry attribute) cdna_amplification_set (bkbit.models.library_generation.AmplifiedCdna attribute) CdnaAmplification (class in bkbit.models.library_generation) ceb (bkbit.models.donor.Language attribute) cel (bkbit.models.donor.Language attribute) cell (bkbit.models.cell_taxonomy.SuspensionType attribute) Cell (class in bkbit.models.cell_taxonomy) cell_label_barcode (bkbit.models.library_generation.DissociatedCellSample attribute) (bkbit.models.library_generation.EnrichedCellSample attribute) cell_prep_type (bkbit.models.library_generation.DissociatedCellSample attribute) cell_type (bkbit.models.cell_taxonomy.AbbreviationEntityType attribute) cell_type_ontology_term (bkbit.models.cell_taxonomy.CellTypeTaxon attribute) cell_type_set_type (bkbit.models.cell_taxonomy.CellTypeSet attribute) cellannotation_schema (bkbit.models.cell_taxonomy.CellTypeTaxonomy attribute) CellBarcoding (class in bkbit.models.library_generation) CellDissociation (class in bkbit.models.library_generation) CellEnrichment (class in bkbit.models.library_generation) CellLabelBarcode (class in bkbit.models.library_generation) Cells (bkbit.models.library_generation.DissociatedCellSampleCellPrepType attribute) CellTypeSet (class in bkbit.models.cell_taxonomy) CellTypeSetType (class in bkbit.models.cell_taxonomy) CellTypeTaxon (class in bkbit.models.cell_taxonomy)

CellTypeTaxonomy (class in bkbit.models.cell_taxonomy) Cerebrovascular_disease (bkbit.models.donor.CauseOfDeath attribute) cervical_spinal_cord (bkbit.models.donor.Tissue attribute) Cervix_uteri_cancer (bkbit.models.donor.CauseOfDeath attribute) ces_LEFT_PARENTHESISTRIGHT_PARENTHESIS (bkbit.models.donor.Language attribute) CF (bkbit.models.donor.BirthCountry attribute) cFULL_STOP_Multiple_myeloma (bkbit.models.donor.CauseOfDeath attribute) cFULL_STOP_Other_pharynx_cancer (bkbit.models.donor.CauseOfDeath attribute) CG (bkbit.models.donor.BirthCountry attribute) CH (bkbit.models.donor.BirthCountry attribute) cha (bkbit.models.donor.Language attribute) Chagas_disease (bkbit.models.donor.CauseOfDeath attribute) chb (bkbit.models.donor.Language attribute) che (bkbit.models.donor.Language attribute) Checksum (class in bkbit.models.anatomical_structure) (class in bkbit.models.cell_taxonomy) (class in bkbit.models.genome_annotation) (class in bkbit.models.library_generation) checksum_algorithm (bkbit.models.anatomical_structure.Checksum attribute) (bkbit.models.cell_taxonomy.Checksum attribute) (bkbit.models.genome_annotation.Checksum attribute) (bkbit.models.library_generation.Checksum attribute) ChemicalEntityOrGeneOrGeneProduct (class in bkbit.models.anatomical_structure) (class in bkbit.models.cell_taxonomy) (class in bkbit.models.donor) (class in bkbit.models.genome_annotation) (class in bkbit.models.library_generation) chg (bkbit.models.donor.Language attribute) chi_LEFT_PARENTHESISBRIGHT_PARENTHESIS (bkbit.models.donor.Language attribute) child (bkbit.models.donor.InformantRelationship attribute) (bkbit.models.donor.RelativeType attribute) Childhood_cluster_diseases (bkbit.models.donor.CauseOfDeath attribute) chk (bkbit.models.donor.Language attribute) Chlamydia (bkbit.models.donor.CauseOfDeath attribute) Chlordiazepoxide (bkbit.models.donor.DrugsFound attribute) Chlorpheniramine (bkbit.models.donor.DrugsFound attribute) Chlorpromazine (bkbit.models.donor.DrugsFound attribute) chm (bkbit.models.donor.Language attribute) chn (bkbit.models.donor.Language attribute) cho (bkbit.models.donor.Language attribute) chp (bkbit.models.donor.Language attribute) chr (bkbit.models.donor.Language attribute) chronic_infarct (bkbit.models.donor.VascularType attribute) Chronic_obstructive_pulmonary_disease (bkbit.models.donor.CauseOfDeath attribute) chronic_traumatic_encephalopathy (bkbit.models.donor.TraumaticType attribute) chu (bkbit.models.donor.Language attribute) chv (bkbit.models.donor.Language attribute) chy (bkbit.models.donor.Language attribute) CI (bkbit.models.donor.BirthCountry attribute) Cirrhosis_of_the_liver (bkbit.models.donor.CauseOfDeath attribute) cis_3_Methylfentanyl (bkbit.models.donor.DrugsFound attribute) Citalopram_SOLIDUS_Escitalopram (bkbit.models.donor.DrugsFound attribute) CK (bkbit.models.donor.BirthCountry attribute) CL (bkbit.models.donor.BirthCountry attribute) cleanup() (bkbit.data_translators.genome_annotation_translator.Gff3 method), [1] Cleft_lip (bkbit.models.donor.CauseOfDeath attribute) Cleft_palate (bkbit.models.donor.CauseOfDeath attribute) clinical_brain_diagnosis (bkbit.models.donor.Donor attribute) clinical_brain_diagnosis_confidence_level (bkbit.models.donor.Donor attribute) Clobazam (bkbit.models.donor.DrugsFound attribute) Clomipramine (bkbit.models.donor.DrugsFound attribute) Clonazepam (bkbit.models.donor.DrugsFound attribute) Clonazolam (bkbit.models.donor.DrugsFound attribute) Clonidine (bkbit.models.donor.DrugsFound attribute) close_match (bkbit.models.cell_taxonomy.Abbreviation attribute) (bkbit.models.cell_taxonomy.CellTypeTaxon attribute) (bkbit.models.cell_taxonomy.OntologyMappable attribute) Clozapine (bkbit.models.donor.DrugsFound attribute) Cluster (class in bkbit.models.cell_taxonomy) cluster_algorithm (bkbit.models.cell_taxonomy.CellTypeTaxonomy attribute) cluster_id (bkbit.models.cell_taxonomy.Cell attribute) cluster_id_mean_expr (bkbit.models.cell_taxonomy.CellTypeTaxonomy attribute) cluster_info (bkbit.models.cell_taxonomy.CellTypeTaxonomy attribute) ClusterSet (class in bkbit.models.cell_taxonomy) CM (bkbit.models.donor.BirthCountry attribute) cmc (bkbit.models.donor.Language attribute) CMO301 (bkbit.models.library_generation.CellLabelBarcode attribute) CMO302 (bkbit.models.library_generation.CellLabelBarcode attribute) CMO303 (bkbit.models.library_generation.CellLabelBarcode attribute) CMO304 (bkbit.models.library_generation.CellLabelBarcode attribute) CMO305 (bkbit.models.library_generation.CellLabelBarcode attribute) CMO306 (bkbit.models.library_generation.CellLabelBarcode attribute) CMO307 (bkbit.models.library_generation.CellLabelBarcode attribute) CMO308 (bkbit.models.library_generation.CellLabelBarcode attribute) CMO309 (bkbit.models.library_generation.CellLabelBarcode attribute) CMO310 (bkbit.models.library_generation.CellLabelBarcode attribute) CMO311 (bkbit.models.library_generation.CellLabelBarcode attribute) CMO312 (bkbit.models.library_generation.CellLabelBarcode attribute) CN (bkbit.models.donor.BirthCountry attribute) cnr (bkbit.models.donor.Language attribute) CO (bkbit.models.donor.BirthCountry attribute) Cocaethylene (bkbit.models.donor.DrugsFound attribute) Cocaine (bkbit.models.donor.DrugsFound attribute) Cocaine_SOLIDUS_Metabolites (bkbit.models.donor.DrugsFound attribute) Codeine (bkbit.models.donor.DrugsFound attribute) Colon_and_rectum_cancers (bkbit.models.donor.CauseOfDeath attribute) colon_ascending (bkbit.models.donor.Tissue attribute) colon_descending (bkbit.models.donor.Tissue attribute) color (bkbit.models.anatomical_structure.ParcellationColorAssignment attribute) (bkbit.models.cell_taxonomy.ParcellationColorAssignment attribute) color_hex_triplet (bkbit.models.cell_taxonomy.DisplayColor attribute) ColorPalette (class in bkbit.models.cell_taxonomy) Communicable_maternal_perinatal_and_nutritional_conditions (bkbit.models.donor.CauseOfDeath attribute) concentration_nm (bkbit.models.library_generation.Library attribute) conception (bkbit.models.library_generation.AgeAtDeathReferencePoint attribute) ConditionType (class in bkbit.models.donor) ConfidenceLevel (class in bkbit.models.donor) ConfiguredBaseModel (class in bkbit.models.anatomical_structure) (class in bkbit.models.cell_taxonomy) (class in bkbit.models.donor) (class in bkbit.models.genome_annotation) (class in bkbit.models.library_generation) confirmed_diagnosis (bkbit.models.donor.ConfidenceLevel attribute) confirmed_hbcac (bkbit.models.donor.Donor attribute) Congenital_anomalies (bkbit.models.donor.CauseOfDeath attribute) Congenital_heart_anomalies (bkbit.models.donor.CauseOfDeath attribute) consent_status (bkbit.models.donor.Donor attribute) content_url (bkbit.data_translators.genome_annotation_translator.Gff3 attribute) (bkbit.models.cell_taxonomy.CellTypeTaxonomy attribute) (bkbit.models.cell_taxonomy.ExpressionMatrix attribute) (bkbit.models.cell_taxonomy.GenomeAnnotation attribute) (bkbit.models.genome_annotation.GenomeAnnotation attribute) (bkbit.models.library_generation.DigitalAsset attribute) contusion (bkbit.models.donor.TraumaticType attribute) convert_jsonld_to_ttl() (in module bkbit.utils.serialize_to_ttl) cop (bkbit.models.donor.Language attribute) cor (bkbit.models.donor.Language attribute) Corpus_uteri_cancer (bkbit.models.donor.CauseOfDeath attribute) cos (bkbit.models.donor.Language attribute) Cotinine (bkbit.models.donor.DrugsFound attribute) counts (bkbit.data_translators.ait_taxonomy_translator.Report attribute) COVID_19 (bkbit.models.donor.CauseOfDeath attribute) COVID_19_Virus_LEFT_PARENTHESISRT_PCRRIGHT_PARENTHESIS (bkbit.models.donor.TestName attribute) cpe (bkbit.models.donor.Language attribute) cpf (bkbit.models.donor.Language attribute) cpp (bkbit.models.donor.Language attribute) CR (bkbit.models.donor.BirthCountry attribute) cre (bkbit.models.donor.Language attribute) create_classes_slots_cvs() (in module bkbit.model_converters.yaml2sheet_converter) create_enums_cvs() (in module bkbit.model_converters.yaml2sheet_converter) create_prefix_headers_csv() (in module bkbit.model_converters.yaml2sheet_converter) creation_date (bkbit.models.anatomical_structure.Dataset attribute) (bkbit.models.anatomical_structure.InformationContentEntity attribute) (bkbit.models.cell_taxonomy.Dataset attribute) (bkbit.models.cell_taxonomy.InformationContentEntity attribute) (bkbit.models.cell_taxonomy.RelativeFrequencyAnalysisResult attribute) (bkbit.models.cell_taxonomy.StudyResult attribute) (bkbit.models.donor.Dataset attribute) (bkbit.models.donor.InformationContentEntity attribute) (bkbit.models.donor.RelativeFrequencyAnalysisResult attribute) (bkbit.models.donor.StudyResult attribute) (bkbit.models.genome_annotation.Dataset attribute) (bkbit.models.genome_annotation.InformationContentEntity attribute) (bkbit.models.genome_annotation.RelativeFrequencyAnalysisResult attribute) (bkbit.models.genome_annotation.StudyResult attribute) (bkbit.models.library_generation.Dataset attribute) (bkbit.models.library_generation.DigitalAsset attribute) (bkbit.models.library_generation.InformationContentEntity attribute) (bkbit.models.library_generation.RelativeFrequencyAnalysisResult attribute) (bkbit.models.library_generation.StudyResult attribute) crh (bkbit.models.donor.Language attribute) crp (bkbit.models.donor.Language attribute) csb (bkbit.models.donor.Language attribute) CSF (bkbit.models.donor.Tissue attribute) CU (bkbit.models.donor.BirthCountry attribute) curated_markers (bkbit.models.cell_taxonomy.CellTypeTaxon attribute) cus (bkbit.models.donor.Language attribute) CV (bkbit.models.donor.BirthCountry attribute) CW (bkbit.models.donor.BirthCountry attribute) CX (bkbit.models.donor.BirthCountry attribute) CY (bkbit.models.donor.BirthCountry attribute) Cyclobenzaprine (bkbit.models.donor.DrugsFound attribute) Cyclopropylfentanyl (bkbit.models.donor.DrugsFound attribute) cym_LEFT_PARENTHESISTRIGHT_PARENTHESIS (bkbit.models.donor.Language attribute) CZ (bkbit.models.donor.BirthCountry attribute) cze_LEFT_PARENTHESISBRIGHT_PARENTHESIS (bkbit.models.donor.Language attribute)

D

dak (bkbit.models.donor.Language attribute) dan (bkbit.models.donor.Language attribute) dar (bkbit.models.donor.Language attribute) data_dir() (in module bkbit.utils.ncbi_taxonomy_cache) data_type (bkbit.models.library_generation.DigitalAsset attribute) Dataset (class in bkbit.models.anatomical_structure) (class in bkbit.models.cell_taxonomy) (class in bkbit.models.donor) (class in bkbit.models.genome_annotation) (class in bkbit.models.library_generation) day (bkbit.models.donor.Language attribute) (bkbit.models.library_generation.AgeAtDeathUnit attribute) DBiT_ATAC_seq (bkbit.models.library_generation.LibraryTechnique attribute) DBiT_RNA_seq (bkbit.models.library_generation.LibraryTechnique attribute) DBiT_Seq (bkbit.models.library_generation.BarcodedCellSampleTechnique attribute) DE (bkbit.models.donor.BirthCountry attribute) death_causes_data_available (bkbit.models.donor.Donor attribute) dec() (in module bkbit.data_translators.ait_taxonomy_translator) default_embedding (bkbit.models.cell_taxonomy.CellTypeTaxonomy attribute) del_ (bkbit.models.donor.Language attribute) Delorazepam (bkbit.models.donor.DrugsFound attribute) dementia (bkbit.models.donor.ConditionType attribute) den (bkbit.models.donor.Language attribute) dendrogram (bkbit.models.cell_taxonomy.CellTypeTaxonomy attribute) Dengue (bkbit.models.donor.CauseOfDeath attribute) Dental_caries (bkbit.models.donor.CauseOfDeath attribute) deprecated (bkbit.models.anatomical_structure.Activity attribute) (bkbit.models.anatomical_structure.AnatomicalAnnotationSet attribute) (bkbit.models.anatomical_structure.AnatomicalSpace attribute) (bkbit.models.anatomical_structure.Attribute attribute) (bkbit.models.anatomical_structure.BiologicalEntity attribute) (bkbit.models.anatomical_structure.Checksum attribute) (bkbit.models.anatomical_structure.Dataset attribute) (bkbit.models.anatomical_structure.Entity attribute) (bkbit.models.anatomical_structure.Gene attribute) (bkbit.models.anatomical_structure.Genome attribute) (bkbit.models.anatomical_structure.ImageDataset attribute) (bkbit.models.anatomical_structure.InformationContentEntity attribute) (bkbit.models.anatomical_structure.MaterialSample attribute) (bkbit.models.anatomical_structure.NamedThing attribute) (bkbit.models.anatomical_structure.OrganismTaxon attribute) (bkbit.models.anatomical_structure.ParcellationAtlas attribute) (bkbit.models.anatomical_structure.ParcellationColorScheme attribute) (bkbit.models.anatomical_structure.ParcellationTerm attribute) (bkbit.models.anatomical_structure.ParcellationTerminology attribute) (bkbit.models.anatomical_structure.ParcellationTermSet attribute) (bkbit.models.anatomical_structure.PhysicalEntity attribute) (bkbit.models.anatomical_structure.Procedure attribute) (bkbit.models.anatomical_structure.VersionedNamedThing attribute) (bkbit.models.cell_taxonomy.Abbreviation attribute) (bkbit.models.cell_taxonomy.Activity attribute) (bkbit.models.cell_taxonomy.AnatomicalAnnotationSet attribute) (bkbit.models.cell_taxonomy.AnatomicalSpace attribute) (bkbit.models.cell_taxonomy.Attribute attribute) (bkbit.models.cell_taxonomy.BiologicalEntity attribute) (bkbit.models.cell_taxonomy.Cell attribute) (bkbit.models.cell_taxonomy.CellTypeSet attribute) (bkbit.models.cell_taxonomy.CellTypeTaxon attribute) (bkbit.models.cell_taxonomy.CellTypeTaxonomy attribute) (bkbit.models.cell_taxonomy.Checksum attribute) (bkbit.models.cell_taxonomy.Cluster attribute) (bkbit.models.cell_taxonomy.ClusterSet attribute) (bkbit.models.cell_taxonomy.ColorPalette attribute) (bkbit.models.cell_taxonomy.Dataset attribute) (bkbit.models.cell_taxonomy.DisplayColor attribute) (bkbit.models.cell_taxonomy.Embedding attribute) (bkbit.models.cell_taxonomy.Entity attribute) (bkbit.models.cell_taxonomy.ExpressionMatrix attribute) (bkbit.models.cell_taxonomy.Gene attribute) (bkbit.models.cell_taxonomy.GeneAnnotation attribute) (bkbit.models.cell_taxonomy.Genome attribute) (bkbit.models.cell_taxonomy.GenomeAnnotation attribute) (bkbit.models.cell_taxonomy.GenomeAssembly attribute) (bkbit.models.cell_taxonomy.ImageDataset attribute) (bkbit.models.cell_taxonomy.InformationContentEntity attribute) (bkbit.models.cell_taxonomy.MaterialSample attribute) (bkbit.models.cell_taxonomy.NamedThing attribute) (bkbit.models.cell_taxonomy.OrganismTaxon attribute) (bkbit.models.cell_taxonomy.ParcellationAtlas attribute) (bkbit.models.cell_taxonomy.ParcellationColorScheme attribute) (bkbit.models.cell_taxonomy.ParcellationTerm attribute) (bkbit.models.cell_taxonomy.ParcellationTerminology attribute) (bkbit.models.cell_taxonomy.ParcellationTermSet attribute) (bkbit.models.cell_taxonomy.PhysicalEntity attribute) (bkbit.models.cell_taxonomy.Procedure attribute) (bkbit.models.cell_taxonomy.RelativeFrequencyAnalysisResult attribute) (bkbit.models.cell_taxonomy.StudyResult attribute) (bkbit.models.cell_taxonomy.VersionedNamedThing attribute) (bkbit.models.donor.Activity attribute) (bkbit.models.donor.Attribute attribute) (bkbit.models.donor.BiologicalEntity attribute) (bkbit.models.donor.Dataset attribute) (bkbit.models.donor.Donor attribute) (bkbit.models.donor.Entity attribute) (bkbit.models.donor.Gene attribute) (bkbit.models.donor.Genome attribute) (bkbit.models.donor.InformationContentEntity attribute) (bkbit.models.donor.MaterialSample attribute) (bkbit.models.donor.NamedThing attribute) (bkbit.models.donor.OrganismTaxon attribute) (bkbit.models.donor.PhysicalEntity attribute) (bkbit.models.donor.Procedure attribute) (bkbit.models.donor.RelativeFrequencyAnalysisResult attribute) (bkbit.models.donor.StudyResult attribute) (bkbit.models.genome_annotation.Activity attribute) (bkbit.models.genome_annotation.Attribute attribute) (bkbit.models.genome_annotation.BiologicalEntity attribute) (bkbit.models.genome_annotation.Checksum attribute) (bkbit.models.genome_annotation.Dataset attribute) (bkbit.models.genome_annotation.Entity attribute) (bkbit.models.genome_annotation.Gene attribute) (bkbit.models.genome_annotation.GeneAnnotation attribute) (bkbit.models.genome_annotation.Genome attribute) (bkbit.models.genome_annotation.GenomeAnnotation attribute) (bkbit.models.genome_annotation.GenomeAssembly attribute) (bkbit.models.genome_annotation.InformationContentEntity attribute) (bkbit.models.genome_annotation.MaterialSample attribute) (bkbit.models.genome_annotation.NamedThing attribute) (bkbit.models.genome_annotation.OrganismTaxon attribute) (bkbit.models.genome_annotation.PhysicalEntity attribute) (bkbit.models.genome_annotation.Procedure attribute) (bkbit.models.genome_annotation.RelativeFrequencyAnalysisResult attribute) (bkbit.models.genome_annotation.StudyResult attribute) (bkbit.models.genome_annotation.VersionedNamedThing attribute) (bkbit.models.library_generation.Activity attribute) (bkbit.models.library_generation.AmplifiedCdna attribute) (bkbit.models.library_generation.Attribute attribute) (bkbit.models.library_generation.BarcodedCellSample attribute) (bkbit.models.library_generation.BiologicalEntity attribute) (bkbit.models.library_generation.BrainSlab attribute) (bkbit.models.library_generation.CdnaAmplification attribute) (bkbit.models.library_generation.CellBarcoding attribute) (bkbit.models.library_generation.CellDissociation attribute) (bkbit.models.library_generation.CellEnrichment attribute) (bkbit.models.library_generation.Checksum attribute) (bkbit.models.library_generation.Dataset attribute) (bkbit.models.library_generation.DigitalAsset attribute) (bkbit.models.library_generation.DissectionRoiDelineation attribute) (bkbit.models.library_generation.DissectionRoiPolygon attribute) (bkbit.models.library_generation.DissociatedCellSample attribute) (bkbit.models.library_generation.Donor attribute) (bkbit.models.library_generation.EnrichedCellSample attribute) (bkbit.models.library_generation.EnrichedCellSampleSplitting attribute) (bkbit.models.library_generation.Entity attribute) (bkbit.models.library_generation.Gene attribute) (bkbit.models.library_generation.Genome attribute) (bkbit.models.library_generation.InformationContentEntity attribute) (bkbit.models.library_generation.Library attribute) (bkbit.models.library_generation.LibraryAliquot attribute) (bkbit.models.library_generation.LibraryConstruction attribute) (bkbit.models.library_generation.LibraryPool attribute) (bkbit.models.library_generation.LibraryPooling attribute) (bkbit.models.library_generation.MaterialSample attribute) (bkbit.models.library_generation.NamedThing attribute) (bkbit.models.library_generation.OrganismTaxon attribute) (bkbit.models.library_generation.PhysicalEntity attribute) (bkbit.models.library_generation.Procedure attribute) (bkbit.models.library_generation.RelativeFrequencyAnalysisResult attribute) (bkbit.models.library_generation.StudyResult attribute) (bkbit.models.library_generation.TissueDissection attribute) (bkbit.models.library_generation.TissueSample attribute) (bkbit.models.library_generation.VersionedNamedThing attribute) depression (bkbit.models.donor.ConditionType attribute) Desalkylflurazepam (bkbit.models.donor.DrugsFound attribute) Descarboethoxyloratadine (bkbit.models.donor.DrugsFound attribute) description (bkbit.models.anatomical_structure.Activity attribute) (bkbit.models.anatomical_structure.AnatomicalAnnotationSet attribute) (bkbit.models.anatomical_structure.AnatomicalSpace attribute) (bkbit.models.anatomical_structure.Attribute attribute) (bkbit.models.anatomical_structure.BiologicalEntity attribute) (bkbit.models.anatomical_structure.Checksum attribute) (bkbit.models.anatomical_structure.Dataset attribute) (bkbit.models.anatomical_structure.Entity attribute) (bkbit.models.anatomical_structure.Gene attribute) (bkbit.models.anatomical_structure.Genome attribute) (bkbit.models.anatomical_structure.ImageDataset attribute) (bkbit.models.anatomical_structure.InformationContentEntity attribute) (bkbit.models.anatomical_structure.MaterialSample attribute) (bkbit.models.anatomical_structure.NamedThing attribute) (bkbit.models.anatomical_structure.OrganismTaxon attribute) (bkbit.models.anatomical_structure.ParcellationAtlas attribute) (bkbit.models.anatomical_structure.ParcellationColorScheme attribute) (bkbit.models.anatomical_structure.ParcellationTerm attribute) (bkbit.models.anatomical_structure.ParcellationTerminology attribute) (bkbit.models.anatomical_structure.ParcellationTermSet attribute) (bkbit.models.anatomical_structure.PhysicalEntity attribute) (bkbit.models.anatomical_structure.Procedure attribute) (bkbit.models.anatomical_structure.VersionedNamedThing attribute) (bkbit.models.cell_taxonomy.Abbreviation attribute) (bkbit.models.cell_taxonomy.Activity attribute) (bkbit.models.cell_taxonomy.AnatomicalAnnotationSet attribute) (bkbit.models.cell_taxonomy.AnatomicalSpace attribute) (bkbit.models.cell_taxonomy.Attribute attribute) (bkbit.models.cell_taxonomy.BiologicalEntity attribute) (bkbit.models.cell_taxonomy.Cell attribute) (bkbit.models.cell_taxonomy.CellTypeSet attribute) (bkbit.models.cell_taxonomy.CellTypeTaxon attribute) (bkbit.models.cell_taxonomy.CellTypeTaxonomy attribute) (bkbit.models.cell_taxonomy.Checksum attribute) (bkbit.models.cell_taxonomy.Cluster attribute) (bkbit.models.cell_taxonomy.ClusterSet attribute) (bkbit.models.cell_taxonomy.ColorPalette attribute) (bkbit.models.cell_taxonomy.Dataset attribute) (bkbit.models.cell_taxonomy.DisplayColor attribute) (bkbit.models.cell_taxonomy.Embedding attribute) (bkbit.models.cell_taxonomy.Entity attribute) (bkbit.models.cell_taxonomy.ExpressionMatrix attribute) (bkbit.models.cell_taxonomy.Gene attribute) (bkbit.models.cell_taxonomy.GeneAnnotation attribute) (bkbit.models.cell_taxonomy.Genome attribute) (bkbit.models.cell_taxonomy.GenomeAnnotation attribute) (bkbit.models.cell_taxonomy.GenomeAssembly attribute) (bkbit.models.cell_taxonomy.ImageDataset attribute) (bkbit.models.cell_taxonomy.InformationContentEntity attribute) (bkbit.models.cell_taxonomy.MaterialSample attribute) (bkbit.models.cell_taxonomy.NamedThing attribute) (bkbit.models.cell_taxonomy.OrganismTaxon attribute) (bkbit.models.cell_taxonomy.ParcellationAtlas attribute) (bkbit.models.cell_taxonomy.ParcellationColorScheme attribute) (bkbit.models.cell_taxonomy.ParcellationTerm attribute) (bkbit.models.cell_taxonomy.ParcellationTerminology attribute) (bkbit.models.cell_taxonomy.ParcellationTermSet attribute) (bkbit.models.cell_taxonomy.PhysicalEntity attribute) (bkbit.models.cell_taxonomy.Procedure attribute) (bkbit.models.cell_taxonomy.RelativeFrequencyAnalysisResult attribute) (bkbit.models.cell_taxonomy.StudyResult attribute) (bkbit.models.cell_taxonomy.VersionedNamedThing attribute) (bkbit.models.donor.Activity attribute) (bkbit.models.donor.Attribute attribute) (bkbit.models.donor.BiologicalEntity attribute) (bkbit.models.donor.Dataset attribute) (bkbit.models.donor.Donor attribute) (bkbit.models.donor.Entity attribute) (bkbit.models.donor.Gene attribute) (bkbit.models.donor.Genome attribute) (bkbit.models.donor.InformationContentEntity attribute) (bkbit.models.donor.MaterialSample attribute) (bkbit.models.donor.NamedThing attribute) (bkbit.models.donor.OrganismTaxon attribute) (bkbit.models.donor.PhysicalEntity attribute) (bkbit.models.donor.Procedure attribute) (bkbit.models.donor.RelativeFrequencyAnalysisResult attribute) (bkbit.models.donor.StudyResult attribute) (bkbit.models.genome_annotation.Activity attribute) (bkbit.models.genome_annotation.Attribute attribute) (bkbit.models.genome_annotation.BiologicalEntity attribute) (bkbit.models.genome_annotation.Checksum attribute) (bkbit.models.genome_annotation.Dataset attribute) (bkbit.models.genome_annotation.Entity attribute) (bkbit.models.genome_annotation.Gene attribute) (bkbit.models.genome_annotation.GeneAnnotation attribute) (bkbit.models.genome_annotation.Genome attribute) (bkbit.models.genome_annotation.GenomeAnnotation attribute) (bkbit.models.genome_annotation.GenomeAssembly attribute) (bkbit.models.genome_annotation.InformationContentEntity attribute) (bkbit.models.genome_annotation.MaterialSample attribute) (bkbit.models.genome_annotation.NamedThing attribute) (bkbit.models.genome_annotation.OrganismTaxon attribute) (bkbit.models.genome_annotation.PhysicalEntity attribute) (bkbit.models.genome_annotation.Procedure attribute) (bkbit.models.genome_annotation.RelativeFrequencyAnalysisResult attribute) (bkbit.models.genome_annotation.StudyResult attribute) (bkbit.models.genome_annotation.VersionedNamedThing attribute) (bkbit.models.library_generation.Activity attribute) (bkbit.models.library_generation.AmplifiedCdna attribute) (bkbit.models.library_generation.Attribute attribute) (bkbit.models.library_generation.BarcodedCellSample attribute) (bkbit.models.library_generation.BiologicalEntity attribute) (bkbit.models.library_generation.BrainSlab attribute) (bkbit.models.library_generation.CdnaAmplification attribute) (bkbit.models.library_generation.CellBarcoding attribute) (bkbit.models.library_generation.CellDissociation attribute) (bkbit.models.library_generation.CellEnrichment attribute) (bkbit.models.library_generation.Checksum attribute) (bkbit.models.library_generation.Dataset attribute) (bkbit.models.library_generation.DigitalAsset attribute) (bkbit.models.library_generation.DissectionRoiDelineation attribute) (bkbit.models.library_generation.DissectionRoiPolygon attribute) (bkbit.models.library_generation.DissociatedCellSample attribute) (bkbit.models.library_generation.Donor attribute) (bkbit.models.library_generation.EnrichedCellSample attribute) (bkbit.models.library_generation.EnrichedCellSampleSplitting attribute) (bkbit.models.library_generation.Entity attribute) (bkbit.models.library_generation.Gene attribute) (bkbit.models.library_generation.Genome attribute) (bkbit.models.library_generation.InformationContentEntity attribute) (bkbit.models.library_generation.Library attribute) (bkbit.models.library_generation.LibraryAliquot attribute) (bkbit.models.library_generation.LibraryConstruction attribute) (bkbit.models.library_generation.LibraryPool attribute) (bkbit.models.library_generation.LibraryPooling attribute) (bkbit.models.library_generation.MaterialSample attribute) (bkbit.models.library_generation.NamedThing attribute) (bkbit.models.library_generation.OrganismTaxon attribute) (bkbit.models.library_generation.PhysicalEntity attribute) (bkbit.models.library_generation.Procedure attribute) (bkbit.models.library_generation.RelativeFrequencyAnalysisResult attribute) (bkbit.models.library_generation.StudyResult attribute) (bkbit.models.library_generation.TissueDissection attribute) (bkbit.models.library_generation.TissueSample attribute) (bkbit.models.library_generation.VersionedNamedThing attribute)

Desipramine (bkbit.models.donor.DrugsFound attribute) Desmethylcitalopram (bkbit.models.donor.DrugsFound attribute) Desmethylclomipramine (bkbit.models.donor.DrugsFound attribute) Desmethyldoxepin (bkbit.models.donor.DrugsFound attribute) Desmethylloperamide (bkbit.models.donor.DrugsFound attribute) Desmethylmirtazapine (bkbit.models.donor.DrugsFound attribute) Desmethylsertraline (bkbit.models.donor.DrugsFound attribute) Desmethyltrimipramine (bkbit.models.donor.DrugsFound attribute) deu_LEFT_PARENTHESISTRIGHT_PARENTHESIS (bkbit.models.donor.Language attribute) developmental_type_specify (bkbit.models.donor.Donor attribute) deviate() (bkbit.data_translators.ait_taxonomy_translator.Report method) deviations (bkbit.data_translators.ait_taxonomy_translator.Report attribute) Dextro_SOLIDUS_Levo_Methorphan (bkbit.models.donor.DrugsFound attribute) Dextrorphan_SOLIDUS_Levorphanol (bkbit.models.donor.DrugsFound attribute) df_columns() (in module bkbit.data_translators.ait_taxonomy_translator) dgr (bkbit.models.donor.Language attribute) Diabetes_mellitus (bkbit.models.donor.CauseOfDeath attribute) diabetes_mellitus (bkbit.models.donor.ConditionType attribute) Diabetes_mellitus_and_endocrine_disorders (bkbit.models.donor.CauseOfDeath attribute) diaphragm (bkbit.models.donor.Tissue attribute) Diarrhoeal_diseases (bkbit.models.donor.CauseOfDeath attribute) Diazepam (bkbit.models.donor.DrugsFound attribute) Dibutylone (bkbit.models.donor.DrugsFound attribute) Dicyclomine (bkbit.models.donor.DrugsFound attribute) digest (bkbit.models.cell_taxonomy.GenomeAnnotation attribute) (bkbit.models.genome_annotation.GenomeAnnotation attribute) (bkbit.models.library_generation.DigitalAsset attribute) Digestive_diseases (bkbit.models.donor.CauseOfDeath attribute) DigestType (class in bkbit.models.anatomical_structure) (class in bkbit.models.cell_taxonomy) (class in bkbit.models.genome_annotation) (class in bkbit.models.library_generation) DigitalAsset (class in bkbit.models.library_generation) Dihydrocodeine_SOLIDUS_Hydrocodol (bkbit.models.donor.DrugsFound attribute) Diltiazem (bkbit.models.donor.DrugsFound attribute) din (bkbit.models.donor.Language attribute) Diphenhydramine (bkbit.models.donor.DrugsFound attribute) Diphtheria (bkbit.models.donor.CauseOfDeath attribute) DisplayColor (class in bkbit.models.cell_taxonomy) dissection_was_guided_by (bkbit.models.library_generation.TissueSample attribute) DissectionRoiDelineation (class in bkbit.models.library_generation) DissectionRoiPolygon (class in bkbit.models.library_generation) DissociatedCellSample (class in bkbit.models.library_generation) DissociatedCellSampleCellPrepType (class in bkbit.models.library_generation) DISTANCEUNIT (class in bkbit.models.anatomical_structure) (class in bkbit.models.cell_taxonomy) div (bkbit.models.donor.Language attribute) divorced (bkbit.models.donor.MaritalStatus attribute) DJ (bkbit.models.donor.BirthCountry attribute) DK (bkbit.models.donor.BirthCountry attribute) DM (bkbit.models.donor.BirthCountry attribute) DNA (bkbit.models.donor.Tissue attribute) DO (bkbit.models.donor.BirthCountry attribute) do_not_know (bkbit.models.donor.SexualOrientation attribute) doi (bkbit.models.donor.Language attribute) DOLLAR_SIGN100000_and_over (bkbit.models.donor.IncomeRange attribute) DOLLAR_SIGN15000_to_DOLLAR_SIGN24999 (bkbit.models.donor.IncomeRange attribute) DOLLAR_SIGN25000_to_DOLLAR_SIGN34999 (bkbit.models.donor.IncomeRange attribute) DOLLAR_SIGN35000_to_DOLLAR_SIGN49999 (bkbit.models.donor.IncomeRange attribute) DOLLAR_SIGN50000_to_DOLLAR_SIGN74999 (bkbit.models.donor.IncomeRange attribute) DOLLAR_SIGN75000_to_DOLLAR_SIGN99999 (bkbit.models.donor.IncomeRange attribute) domestic_partnership (bkbit.models.donor.MaritalStatus attribute) Donepezil (bkbit.models.donor.DrugsFound attribute) Donor (class in bkbit.models.donor) (class in bkbit.models.library_generation) Donor_from_NIH_NeuroBioBank (bkbit.models.donor.DonorSource attribute) donor_labs (bkbit.models.donor.Donor attribute) donor_project (bkbit.models.donor.Donor attribute) donor_source (bkbit.models.donor.Donor attribute) donor_species (bkbit.models.donor.Donor attribute) DonorSource (class in bkbit.models.donor) Down_syndrome (bkbit.models.donor.CauseOfDeath attribute) download_and_extract_zip_in_memory() (in module bkbit.utils.get_ncbi_taxonomy) (in module bkbit.utils.ncbi_taxonomy_cache) download_gff_file() (bkbit.data_translators.genome_annotation_translator.Gff3 method) (bkbit.data_translators.genome_annotation_translator.Gff3 static method) download_google_sheet_as_tsv() (in module bkbit.model_converters.sheets_converter) download_gsheets() (in module bkbit.model_converters.sheets_converter) Doxepin (bkbit.models.donor.DrugsFound attribute) Doxylamine (bkbit.models.donor.DrugsFound attribute) dra (bkbit.models.donor.Language attribute) DRG_cervical (bkbit.models.donor.Tissue attribute) DRG_lumbar (bkbit.models.donor.Tissue attribute) DRG_sacral (bkbit.models.donor.Tissue attribute) DRG_thoracic (bkbit.models.donor.Tissue attribute) Droplet_Paired_Tag (bkbit.models.library_generation.BarcodedCellSampleTechnique attribute) Droplet_Paired_TagSEMICOLON_DNA (bkbit.models.library_generation.LibraryTechnique attribute) Droplet_Paired_TagSEMICOLON_RNA (bkbit.models.library_generation.LibraryTechnique attribute) Drownings (bkbit.models.donor.CauseOfDeath attribute) Drug_use_disorders (bkbit.models.donor.CauseOfDeath attribute) DrugsFound (class in bkbit.models.donor) dsb (bkbit.models.donor.Language attribute) dua (bkbit.models.donor.Language attribute) Duloxetine (bkbit.models.donor.DrugsFound attribute) Duloxetine_Breakdown_Product (bkbit.models.donor.DrugsFound attribute) dum (bkbit.models.donor.Language attribute) duodenum (bkbit.models.donor.Tissue attribute) dut_LEFT_PARENTHESISBRIGHT_PARENTHESIS (bkbit.models.donor.Language attribute) dystonia (bkbit.models.donor.ConditionType attribute) dyu (bkbit.models.donor.Language attribute) DZ (bkbit.models.donor.BirthCountry attribute) dzo (bkbit.models.donor.Language attribute)

E

EC (bkbit.models.donor.BirthCountry attribute) EDDP (bkbit.models.donor.DrugsFound attribute) Edentulism (bkbit.models.donor.CauseOfDeath attribute) education_years_number (bkbit.models.donor.Donor attribute) EE (bkbit.models.donor.BirthCountry attribute) efi (bkbit.models.donor.Language attribute) EG (bkbit.models.donor.BirthCountry attribute) egy (bkbit.models.donor.Language attribute) EH (bkbit.models.donor.BirthCountry attribute) either (bkbit.models.donor.Handedness attribute) eka (bkbit.models.donor.Language attribute) ell_LEFT_PARENTHESISTRIGHT_PARENTHESIS (bkbit.models.donor.Language attribute) elx (bkbit.models.donor.Language attribute) Embedding (class in bkbit.models.cell_taxonomy) embedding_key (bkbit.models.cell_taxonomy.Embedding attribute) embedding_matrix (bkbit.models.cell_taxonomy.Embedding attribute) empty() (bkbit.data_translators.ait_taxonomy_translator.Report method) Endocrine_disorders (bkbit.models.donor.CauseOfDeath attribute) eng (bkbit.models.donor.Language attribute) enm (bkbit.models.donor.Language attribute) EnrichedCellSample (class in bkbit.models.library_generation) EnrichedCellSampleSplitting (class in bkbit.models.library_generation) enrichment_population (bkbit.models.library_generation.EnrichedCellSample attribute) ENSEMBL (bkbit.models.cell_taxonomy.AuthorityType attribute) (bkbit.models.genome_annotation.AuthorityType attribute) ensure_full_cache() (in module bkbit.utils.ncbi_taxonomy_cache) Entity (class in bkbit.models.anatomical_structure) (class in bkbit.models.cell_taxonomy) (class in bkbit.models.donor) (class in bkbit.models.genome_annotation) (class in bkbit.models.library_generation) entity_type (bkbit.models.cell_taxonomy.Abbreviation attribute) Ephedrine (bkbit.models.donor.DrugsFound attribute) Ephedrine_SOLIDUS_Pseudoephedrine (bkbit.models.donor.DrugsFound attribute) Epilepsy (bkbit.models.donor.CauseOfDeath attribute) epilepsy (bkbit.models.donor.ConditionType attribute) epo (bkbit.models.donor.Language attribute) equivalent_identifiers (bkbit.models.cell_taxonomy.Abbreviation attribute) (bkbit.models.cell_taxonomy.Activity attribute) (bkbit.models.cell_taxonomy.AnatomicalAnnotationSet attribute) (bkbit.models.cell_taxonomy.AnatomicalSpace attribute) (bkbit.models.cell_taxonomy.Attribute attribute) (bkbit.models.cell_taxonomy.BiologicalEntity attribute) (bkbit.models.cell_taxonomy.Cell attribute) (bkbit.models.cell_taxonomy.CellTypeSet attribute) (bkbit.models.cell_taxonomy.CellTypeTaxon attribute) (bkbit.models.cell_taxonomy.CellTypeTaxonomy attribute) (bkbit.models.cell_taxonomy.Cluster attribute) (bkbit.models.cell_taxonomy.ClusterSet attribute) (bkbit.models.cell_taxonomy.ColorPalette attribute) (bkbit.models.cell_taxonomy.Dataset attribute) (bkbit.models.cell_taxonomy.DisplayColor attribute) (bkbit.models.cell_taxonomy.Embedding attribute) (bkbit.models.cell_taxonomy.ExpressionMatrix attribute) (bkbit.models.cell_taxonomy.Gene attribute) (bkbit.models.cell_taxonomy.GeneAnnotation attribute) (bkbit.models.cell_taxonomy.Genome attribute) (bkbit.models.cell_taxonomy.GenomeAnnotation attribute) (bkbit.models.cell_taxonomy.GenomeAssembly attribute) (bkbit.models.cell_taxonomy.ImageDataset attribute) (bkbit.models.cell_taxonomy.InformationContentEntity attribute) (bkbit.models.cell_taxonomy.MaterialSample attribute) (bkbit.models.cell_taxonomy.NamedThing attribute) (bkbit.models.cell_taxonomy.OrganismTaxon attribute) (bkbit.models.cell_taxonomy.ParcellationAtlas attribute) (bkbit.models.cell_taxonomy.ParcellationColorScheme attribute) (bkbit.models.cell_taxonomy.ParcellationTerm attribute) (bkbit.models.cell_taxonomy.ParcellationTerminology attribute) (bkbit.models.cell_taxonomy.ParcellationTermSet attribute) (bkbit.models.cell_taxonomy.PhysicalEntity attribute) (bkbit.models.cell_taxonomy.Procedure attribute) (bkbit.models.cell_taxonomy.RelativeFrequencyAnalysisResult attribute) (bkbit.models.cell_taxonomy.StudyResult attribute) (bkbit.models.cell_taxonomy.VersionedNamedThing attribute) (bkbit.models.donor.Activity attribute) (bkbit.models.donor.Attribute attribute) (bkbit.models.donor.BiologicalEntity attribute) (bkbit.models.donor.Dataset attribute) (bkbit.models.donor.Donor attribute) (bkbit.models.donor.Gene attribute) (bkbit.models.donor.Genome attribute) (bkbit.models.donor.InformationContentEntity attribute) (bkbit.models.donor.MaterialSample attribute) (bkbit.models.donor.NamedThing attribute) (bkbit.models.donor.OrganismTaxon attribute) (bkbit.models.donor.PhysicalEntity attribute) (bkbit.models.donor.Procedure attribute) (bkbit.models.donor.RelativeFrequencyAnalysisResult attribute) (bkbit.models.donor.StudyResult attribute) (bkbit.models.genome_annotation.Activity attribute) (bkbit.models.genome_annotation.Attribute attribute) (bkbit.models.genome_annotation.BiologicalEntity attribute) (bkbit.models.genome_annotation.Dataset attribute) (bkbit.models.genome_annotation.Gene attribute) (bkbit.models.genome_annotation.GeneAnnotation attribute) (bkbit.models.genome_annotation.Genome attribute) (bkbit.models.genome_annotation.GenomeAnnotation attribute) (bkbit.models.genome_annotation.GenomeAssembly attribute) (bkbit.models.genome_annotation.InformationContentEntity attribute) (bkbit.models.genome_annotation.MaterialSample attribute) (bkbit.models.genome_annotation.NamedThing attribute) (bkbit.models.genome_annotation.OrganismTaxon attribute) (bkbit.models.genome_annotation.PhysicalEntity attribute) (bkbit.models.genome_annotation.Procedure attribute) (bkbit.models.genome_annotation.RelativeFrequencyAnalysisResult attribute) (bkbit.models.genome_annotation.StudyResult attribute) (bkbit.models.genome_annotation.VersionedNamedThing attribute) (bkbit.models.library_generation.Activity attribute) (bkbit.models.library_generation.AmplifiedCdna attribute) (bkbit.models.library_generation.Attribute attribute) (bkbit.models.library_generation.BarcodedCellSample attribute) (bkbit.models.library_generation.BiologicalEntity attribute) (bkbit.models.library_generation.BrainSlab attribute) (bkbit.models.library_generation.CdnaAmplification attribute) (bkbit.models.library_generation.CellBarcoding attribute) (bkbit.models.library_generation.CellDissociation attribute) (bkbit.models.library_generation.CellEnrichment attribute) (bkbit.models.library_generation.Dataset attribute) (bkbit.models.library_generation.DigitalAsset attribute) (bkbit.models.library_generation.DissectionRoiDelineation attribute) (bkbit.models.library_generation.DissociatedCellSample attribute) (bkbit.models.library_generation.Donor attribute) (bkbit.models.library_generation.EnrichedCellSample attribute) (bkbit.models.library_generation.EnrichedCellSampleSplitting attribute) (bkbit.models.library_generation.Gene attribute) (bkbit.models.library_generation.Genome attribute) (bkbit.models.library_generation.InformationContentEntity attribute) (bkbit.models.library_generation.Library attribute) (bkbit.models.library_generation.LibraryAliquot attribute) (bkbit.models.library_generation.LibraryConstruction attribute) (bkbit.models.library_generation.LibraryPool attribute) (bkbit.models.library_generation.LibraryPooling attribute) (bkbit.models.library_generation.MaterialSample attribute) (bkbit.models.library_generation.NamedThing attribute) (bkbit.models.library_generation.OrganismTaxon attribute) (bkbit.models.library_generation.PhysicalEntity attribute) (bkbit.models.library_generation.Procedure attribute) (bkbit.models.library_generation.RelativeFrequencyAnalysisResult attribute) (bkbit.models.library_generation.StudyResult attribute) (bkbit.models.library_generation.TissueDissection attribute) (bkbit.models.library_generation.TissueSample attribute) (bkbit.models.library_generation.VersionedNamedThing attribute)

ER (bkbit.models.donor.BirthCountry attribute) ES (bkbit.models.donor.BirthCountry attribute) esophagus (bkbit.models.donor.Tissue attribute) est (bkbit.models.donor.Language attribute) Estazolam (bkbit.models.donor.DrugsFound attribute) Eszopiclone_SOLIDUS_Zopiclone (bkbit.models.donor.DrugsFound attribute) Eszopiclone_SOLIDUS_Zopiclone_Breakdown (bkbit.models.donor.DrugsFound attribute) ET (bkbit.models.donor.BirthCountry attribute) Ethanol (bkbit.models.donor.DrugsFound attribute) Ethinamate (bkbit.models.donor.DrugsFound attribute) ethnicity (bkbit.models.donor.Donor attribute) Ethnicity (class in bkbit.models.donor) Ethosuximide (bkbit.models.donor.DrugsFound attribute) Ethotoin (bkbit.models.donor.DrugsFound attribute) Ethylmorphine (bkbit.models.donor.DrugsFound attribute) Etizolam (bkbit.models.donor.DrugsFound attribute) eus_LEFT_PARENTHESISTRIGHT_PARENTHESIS (bkbit.models.donor.Language attribute) ewe (bkbit.models.donor.Language attribute) ewo (bkbit.models.donor.Language attribute) exact_match (bkbit.models.cell_taxonomy.Abbreviation attribute) (bkbit.models.cell_taxonomy.CellTypeTaxon attribute) (bkbit.models.cell_taxonomy.OntologyMappable attribute) (bkbit.models.cell_taxonomy.OrganismTaxon attribute) (bkbit.models.donor.OrganismTaxon attribute) (bkbit.models.genome_annotation.OrganismTaxon attribute) (bkbit.models.library_generation.OrganismTaxon attribute) Exposure_to_mechanical_forces (bkbit.models.donor.CauseOfDeath attribute) ExpressionMatrix (class in bkbit.models.cell_taxonomy) ExpressionMatrixType (class in bkbit.models.cell_taxonomy) extract_specimen_ids() (in module bkbit.data_translators.specimen_metadata_translator) eyes (bkbit.models.donor.Tissue attribute)

F

Fail (bkbit.models.library_generation.AmplifiedCdnaRnaAmplificationPassFail attribute) (bkbit.models.library_generation.LibraryPrepPassFail attribute) fallopian_tube (bkbit.models.donor.Tissue attribute) Falls (bkbit.models.donor.CauseOfDeath attribute) fan (bkbit.models.donor.Language attribute) fao (bkbit.models.donor.Language attribute) fas_LEFT_PARENTHESISTRIGHT_PARENTHESIS (bkbit.models.donor.Language attribute) fastq_file_alignment_status (bkbit.models.library_generation.LibraryAliquot attribute) FastqFileAlignmentStatus (class in bkbit.models.library_generation) fat (bkbit.models.donor.Language attribute) Felbamate (bkbit.models.donor.DrugsFound attribute) female (bkbit.models.donor.Gender attribute) (bkbit.models.donor.Sex attribute) Fentanyl (bkbit.models.donor.DrugsFound attribute) FI (bkbit.models.donor.BirthCountry attribute) fibroblasts (bkbit.models.donor.Tissue attribute) fij (bkbit.models.donor.Language attribute) fil (bkbit.models.donor.Language attribute) filter (bkbit.models.cell_taxonomy.CellTypeTaxonomy attribute) fin (bkbit.models.donor.Language attribute) Fires (bkbit.models.donor.CauseOfDeath attribute) fiu (bkbit.models.donor.Language attribute) fix_tsv_files() (in module bkbit.model_converters.sheets_converter) fixed_ex_vivo (bkbit.models.donor.PostmortemMRI attribute) Fixed_hemibrain (bkbit.models.donor.BrainTissueWeightType attribute) Fixed_whole_brain (bkbit.models.donor.BrainTissueWeightType attribute) FJ (bkbit.models.donor.BirthCountry attribute) FK (bkbit.models.donor.BirthCountry attribute) Flecainide (bkbit.models.donor.DrugsFound attribute) flowcell (bkbit.models.library_generation.LibraryPool attribute) Flubromazepam (bkbit.models.donor.DrugsFound attribute) Flubromazolam (bkbit.models.donor.DrugsFound attribute) Fluconazole (bkbit.models.donor.DrugsFound attribute) Flunitrazepam (bkbit.models.donor.DrugsFound attribute) Fluoxetine (bkbit.models.donor.DrugsFound attribute) Fluphenazine (bkbit.models.donor.DrugsFound attribute) Flurazepam (bkbit.models.donor.DrugsFound attribute) Fluvoxamine (bkbit.models.donor.DrugsFound attribute) FM (bkbit.models.donor.BirthCountry attribute) FO (bkbit.models.donor.BirthCountry attribute) fon (bkbit.models.donor.Language attribute) formalin_fixed (bkbit.models.donor.Preparation attribute) format (bkbit.models.anatomical_structure.Dataset attribute) (bkbit.models.anatomical_structure.InformationContentEntity attribute) (bkbit.models.cell_taxonomy.Dataset attribute) (bkbit.models.cell_taxonomy.InformationContentEntity attribute) (bkbit.models.cell_taxonomy.RelativeFrequencyAnalysisResult attribute) (bkbit.models.cell_taxonomy.StudyResult attribute) (bkbit.models.donor.Dataset attribute) (bkbit.models.donor.InformationContentEntity attribute) (bkbit.models.donor.RelativeFrequencyAnalysisResult attribute) (bkbit.models.donor.StudyResult attribute) (bkbit.models.genome_annotation.Dataset attribute) (bkbit.models.genome_annotation.InformationContentEntity attribute) (bkbit.models.genome_annotation.RelativeFrequencyAnalysisResult attribute) (bkbit.models.genome_annotation.StudyResult attribute) (bkbit.models.library_generation.Dataset attribute) (bkbit.models.library_generation.DigitalAsset attribute) (bkbit.models.library_generation.InformationContentEntity attribute) (bkbit.models.library_generation.RelativeFrequencyAnalysisResult attribute) (bkbit.models.library_generation.StudyResult attribute) FR (bkbit.models.donor.BirthCountry attribute) fra_LEFT_PARENTHESISTRIGHT_PARENTHESIS (bkbit.models.donor.Language attribute) fre_LEFT_PARENTHESISBRIGHT_PARENTHESIS (bkbit.models.donor.Language attribute) fresh_ex_vivo (bkbit.models.donor.PostmortemMRI attribute) Fresh_hemibrain (bkbit.models.donor.BrainTissueWeightType attribute) Fresh_whole_brain (bkbit.models.donor.BrainTissueWeightType attribute) friendSOLIDUSneighbor (bkbit.models.donor.InformantRelationship attribute) frm (bkbit.models.donor.Language attribute) fro (bkbit.models.donor.Language attribute) frozen (bkbit.models.donor.Preparation attribute) frr (bkbit.models.donor.Language attribute) frs (bkbit.models.donor.Language attribute) fry (bkbit.models.donor.Language attribute) ful (bkbit.models.donor.Language attribute) full_cache_paths() (in module bkbit.utils.ncbi_taxonomy_cache) full_name (bkbit.models.anatomical_structure.Activity attribute) (bkbit.models.anatomical_structure.AnatomicalAnnotationSet attribute) (bkbit.models.anatomical_structure.AnatomicalSpace attribute) (bkbit.models.anatomical_structure.Attribute attribute) (bkbit.models.anatomical_structure.BiologicalEntity attribute) (bkbit.models.anatomical_structure.Dataset attribute) (bkbit.models.anatomical_structure.Gene attribute) (bkbit.models.anatomical_structure.Genome attribute) (bkbit.models.anatomical_structure.ImageDataset attribute) (bkbit.models.anatomical_structure.InformationContentEntity attribute) (bkbit.models.anatomical_structure.MaterialSample attribute) (bkbit.models.anatomical_structure.NamedThing attribute) (bkbit.models.anatomical_structure.OrganismTaxon attribute) (bkbit.models.anatomical_structure.ParcellationAtlas attribute) (bkbit.models.anatomical_structure.ParcellationColorScheme attribute) (bkbit.models.anatomical_structure.ParcellationTerm attribute) (bkbit.models.anatomical_structure.ParcellationTerminology attribute) (bkbit.models.anatomical_structure.ParcellationTermSet attribute) (bkbit.models.anatomical_structure.PhysicalEntity attribute) (bkbit.models.anatomical_structure.Procedure attribute) (bkbit.models.anatomical_structure.VersionedNamedThing attribute) (bkbit.models.cell_taxonomy.Abbreviation attribute) (bkbit.models.cell_taxonomy.Activity attribute) (bkbit.models.cell_taxonomy.AnatomicalAnnotationSet attribute) (bkbit.models.cell_taxonomy.AnatomicalSpace attribute) (bkbit.models.cell_taxonomy.Attribute attribute) (bkbit.models.cell_taxonomy.BiologicalEntity attribute) (bkbit.models.cell_taxonomy.Cell attribute) (bkbit.models.cell_taxonomy.CellTypeSet attribute) (bkbit.models.cell_taxonomy.CellTypeTaxon attribute) (bkbit.models.cell_taxonomy.CellTypeTaxonomy attribute) (bkbit.models.cell_taxonomy.Cluster attribute) (bkbit.models.cell_taxonomy.ClusterSet attribute) (bkbit.models.cell_taxonomy.ColorPalette attribute) (bkbit.models.cell_taxonomy.Dataset attribute) (bkbit.models.cell_taxonomy.DisplayColor attribute) (bkbit.models.cell_taxonomy.Embedding attribute) (bkbit.models.cell_taxonomy.ExpressionMatrix attribute) (bkbit.models.cell_taxonomy.Gene attribute) (bkbit.models.cell_taxonomy.GeneAnnotation attribute) (bkbit.models.cell_taxonomy.Genome attribute) (bkbit.models.cell_taxonomy.GenomeAnnotation attribute) (bkbit.models.cell_taxonomy.GenomeAssembly attribute) (bkbit.models.cell_taxonomy.ImageDataset attribute) (bkbit.models.cell_taxonomy.InformationContentEntity attribute) (bkbit.models.cell_taxonomy.MaterialSample attribute) (bkbit.models.cell_taxonomy.NamedThing attribute) (bkbit.models.cell_taxonomy.OrganismTaxon attribute) (bkbit.models.cell_taxonomy.ParcellationAtlas attribute) (bkbit.models.cell_taxonomy.ParcellationColorScheme attribute) (bkbit.models.cell_taxonomy.ParcellationTerm attribute) (bkbit.models.cell_taxonomy.ParcellationTerminology attribute) (bkbit.models.cell_taxonomy.ParcellationTermSet attribute) (bkbit.models.cell_taxonomy.PhysicalEntity attribute) (bkbit.models.cell_taxonomy.Procedure attribute) (bkbit.models.cell_taxonomy.RelativeFrequencyAnalysisResult attribute) (bkbit.models.cell_taxonomy.StudyResult attribute) (bkbit.models.cell_taxonomy.VersionedNamedThing attribute) (bkbit.models.donor.Activity attribute) (bkbit.models.donor.Attribute attribute) (bkbit.models.donor.BiologicalEntity attribute) (bkbit.models.donor.Dataset attribute) (bkbit.models.donor.Donor attribute) (bkbit.models.donor.Gene attribute) (bkbit.models.donor.Genome attribute) (bkbit.models.donor.InformationContentEntity attribute) (bkbit.models.donor.MaterialSample attribute) (bkbit.models.donor.NamedThing attribute) (bkbit.models.donor.OrganismTaxon attribute) (bkbit.models.donor.PhysicalEntity attribute) (bkbit.models.donor.Procedure attribute) (bkbit.models.donor.RelativeFrequencyAnalysisResult attribute) (bkbit.models.donor.StudyResult attribute) (bkbit.models.genome_annotation.Activity attribute) (bkbit.models.genome_annotation.Attribute attribute) (bkbit.models.genome_annotation.BiologicalEntity attribute) (bkbit.models.genome_annotation.Dataset attribute) (bkbit.models.genome_annotation.Gene attribute) (bkbit.models.genome_annotation.GeneAnnotation attribute) (bkbit.models.genome_annotation.Genome attribute) (bkbit.models.genome_annotation.GenomeAnnotation attribute) (bkbit.models.genome_annotation.GenomeAssembly attribute) (bkbit.models.genome_annotation.InformationContentEntity attribute) (bkbit.models.genome_annotation.MaterialSample attribute) (bkbit.models.genome_annotation.NamedThing attribute) (bkbit.models.genome_annotation.OrganismTaxon attribute) (bkbit.models.genome_annotation.PhysicalEntity attribute) (bkbit.models.genome_annotation.Procedure attribute) (bkbit.models.genome_annotation.RelativeFrequencyAnalysisResult attribute) (bkbit.models.genome_annotation.StudyResult attribute) (bkbit.models.genome_annotation.VersionedNamedThing attribute) (bkbit.models.library_generation.Activity attribute) (bkbit.models.library_generation.AmplifiedCdna attribute) (bkbit.models.library_generation.Attribute attribute) (bkbit.models.library_generation.BarcodedCellSample attribute) (bkbit.models.library_generation.BiologicalEntity attribute) (bkbit.models.library_generation.BrainSlab attribute) (bkbit.models.library_generation.CdnaAmplification attribute) (bkbit.models.library_generation.CellBarcoding attribute) (bkbit.models.library_generation.CellDissociation attribute) (bkbit.models.library_generation.CellEnrichment attribute) (bkbit.models.library_generation.Dataset attribute) (bkbit.models.library_generation.DigitalAsset attribute) (bkbit.models.library_generation.DissectionRoiDelineation attribute) (bkbit.models.library_generation.DissociatedCellSample attribute) (bkbit.models.library_generation.Donor attribute) (bkbit.models.library_generation.EnrichedCellSample attribute) (bkbit.models.library_generation.EnrichedCellSampleSplitting attribute) (bkbit.models.library_generation.Gene attribute) (bkbit.models.library_generation.Genome attribute) (bkbit.models.library_generation.InformationContentEntity attribute) (bkbit.models.library_generation.Library attribute) (bkbit.models.library_generation.LibraryAliquot attribute) (bkbit.models.library_generation.LibraryConstruction attribute) (bkbit.models.library_generation.LibraryPool attribute) (bkbit.models.library_generation.LibraryPooling attribute) (bkbit.models.library_generation.MaterialSample attribute) (bkbit.models.library_generation.NamedThing attribute) (bkbit.models.library_generation.OrganismTaxon attribute) (bkbit.models.library_generation.PhysicalEntity attribute) (bkbit.models.library_generation.Procedure attribute) (bkbit.models.library_generation.RelativeFrequencyAnalysisResult attribute) (bkbit.models.library_generation.StudyResult attribute) (bkbit.models.library_generation.TissueDissection attribute) (bkbit.models.library_generation.TissueSample attribute) (bkbit.models.library_generation.VersionedNamedThing attribute)

full_sibling (bkbit.models.donor.RelativeType attribute) fur (bkbit.models.donor.Language attribute)

G

GA (bkbit.models.donor.BirthCountry attribute) gaa (bkbit.models.donor.Language attribute) Gabapentin (bkbit.models.donor.DrugsFound attribute) Gabapentin_Breakdown_Product (bkbit.models.donor.DrugsFound attribute) gallbladder (bkbit.models.donor.Tissue attribute) Gallbladder_and_biliary_diseases (bkbit.models.donor.CauseOfDeath attribute) Gallbladder_and_biliary_tract_cancer (bkbit.models.donor.CauseOfDeath attribute) Gastritis_and_duodenitis (bkbit.models.donor.CauseOfDeath attribute) gay (bkbit.models.donor.Language attribute) GB (bkbit.models.donor.BirthCountry attribute) gba (bkbit.models.donor.Language attribute) GD (bkbit.models.donor.BirthCountry attribute) GE (bkbit.models.donor.BirthCountry attribute) gem (bkbit.models.donor.Language attribute) gender (bkbit.models.donor.Donor attribute) Gender (class in bkbit.models.donor) gender_fluid (bkbit.models.donor.Gender attribute) gene (bkbit.models.cell_taxonomy.AbbreviationEntityType attribute) Gene (class in bkbit.models.anatomical_structure) (class in bkbit.models.cell_taxonomy) (class in bkbit.models.donor) (class in bkbit.models.genome_annotation) (class in bkbit.models.library_generation) GENE_ANNOTATION_CLASS (in module bkbit.data_translators.ait_taxonomy_translator) gene_annotation_format() (in module bkbit.data_translators.ait_taxonomy_translator) gene_annotation_version (bkbit.models.cell_taxonomy.CellTypeTaxonomy attribute) GeneAnnotation (class in bkbit.models.cell_taxonomy) (class in bkbit.models.genome_annotation) GeneIndex (class in bkbit.data_translators.ait_taxonomy_translator) GeneOrGeneProduct (class in bkbit.models.anatomical_structure) (class in bkbit.models.cell_taxonomy) (class in bkbit.models.donor) (class in bkbit.models.genome_annotation) (class in bkbit.models.library_generation) generate_anatomical_annotation_set() (bkbit.data_translators.anatomical_structure_translator.AnS method) generate_anatomical_space() (bkbit.data_translators.anatomical_structure_translator.AnS method) generate_bican_object() (bkbit.data_translators.library_generation_translator.SpecimenPortal method), [1] generate_digest() (bkbit.data_translators.genome_annotation_translator.Gff3 method), [1] generate_ensembl_gene_annotation() (bkbit.data_translators.genome_annotation_translator.Gff3 method), [1] generate_genome_annotation() (bkbit.data_translators.genome_annotation_translator.Gff3 method), [1] generate_genome_assembly() (bkbit.data_translators.genome_annotation_translator.Gff3 method), [1] generate_image_dataset() (bkbit.data_translators.anatomical_structure_translator.AnS method) generate_ncbi_gene_annotation() (bkbit.data_translators.genome_annotation_translator.Gff3 method), [1] generate_object_id() (in module bkbit.utils.generate_bkbit_id) generate_organism_taxon() (bkbit.data_translators.genome_annotation_translator.Gff3 class method) (bkbit.data_translators.genome_annotation_translator.Gff3 method) generate_parcellation_annotation() (bkbit.data_translators.anatomical_structure_translator.AnS method) generate_parcellation_annotation_term_map() (bkbit.data_translators.anatomical_structure_translator.AnS method) generate_parcellation_atlas() (bkbit.data_translators.anatomical_structure_translator.AnS method) generate_parcellation_color_assignment() (bkbit.data_translators.anatomical_structure_translator.AnS method) generate_parcellation_color_scheme() (bkbit.data_translators.anatomical_structure_translator.AnS method) generate_parcellation_term() (bkbit.data_translators.anatomical_structure_translator.AnS method) generate_parcellation_term_set() (bkbit.data_translators.anatomical_structure_translator.AnS method) generate_parcellation_terminology() (bkbit.data_translators.anatomical_structure_translator.AnS method) generated_objects (bkbit.data_translators.library_generation_translator.SpecimenPortal attribute) genetic_diagnosis_code (bkbit.models.donor.Donor attribute) genetic_diagnosis_confidence_level (bkbit.models.donor.Donor attribute) Genitourinary_diseases (bkbit.models.donor.CauseOfDeath attribute) Genome (class in bkbit.models.anatomical_structure) (class in bkbit.models.cell_taxonomy) (class in bkbit.models.donor) (class in bkbit.models.genome_annotation) (class in bkbit.models.library_generation)

genome_annotations (bkbit.models.cell_taxonomy.AnnotationCollection attribute) (bkbit.models.genome_annotation.AnnotationCollection attribute) genome_assemblies (bkbit.models.cell_taxonomy.AnnotationCollection attribute) (bkbit.models.genome_annotation.AnnotationCollection attribute) GenomeAnnotation (class in bkbit.models.cell_taxonomy) (class in bkbit.models.genome_annotation) GenomeAssembly (class in bkbit.models.cell_taxonomy) (class in bkbit.models.genome_annotation) GenomicEntity (class in bkbit.models.anatomical_structure) (class in bkbit.models.cell_taxonomy) (class in bkbit.models.donor) (class in bkbit.models.genome_annotation) (class in bkbit.models.library_generation) geo_LEFT_PARENTHESISBRIGHT_PARENTHESIS (bkbit.models.donor.Language attribute) ger_LEFT_PARENTHESISBRIGHT_PARENTHESIS (bkbit.models.donor.Language attribute) get_ancestors() (in module bkbit.utils.nimp_api_endpoints) get_data() (in module bkbit.utils.nimp_api_endpoints) get_descendants() (in module bkbit.utils.nimp_api_endpoints) get_donor() (in module bkbit.utils.nimp_api_endpoints) get_field_type() (bkbit.data_translators.library_generation_translator.SpecimenPortal method) (bkbit.data_translators.library_generation_translator.SpecimenPortal static method) GEXOnly (bkbit.models.library_generation.BarcodedCellSampleTechnique attribute) gez (bkbit.models.donor.Language attribute) GF (bkbit.models.donor.BirthCountry attribute) Gff3 (class in bkbit.data_translators.genome_annotation_translator) GG (bkbit.models.donor.BirthCountry attribute) GH (bkbit.models.donor.BirthCountry attribute) GI (bkbit.models.donor.BirthCountry attribute) gil (bkbit.models.donor.Language attribute) GL (bkbit.models.donor.BirthCountry attribute) gla (bkbit.models.donor.Language attribute) Glaucoma (bkbit.models.donor.CauseOfDeath attribute) gle (bkbit.models.donor.Language attribute) glg (bkbit.models.donor.Language attribute) glv (bkbit.models.donor.Language attribute) GM (bkbit.models.donor.BirthCountry attribute) gmh (bkbit.models.donor.Language attribute) GN (bkbit.models.donor.BirthCountry attribute) goh (bkbit.models.donor.Language attribute) gon (bkbit.models.donor.Language attribute) Gonorrhoea (bkbit.models.donor.CauseOfDeath attribute) gor (bkbit.models.donor.Language attribute) got (bkbit.models.donor.Language attribute) Gout (bkbit.models.donor.CauseOfDeath attribute) GP (bkbit.models.donor.BirthCountry attribute) GQ (bkbit.models.donor.BirthCountry attribute) GR (bkbit.models.donor.BirthCountry attribute) grandchild (bkbit.models.donor.RelativeType attribute) grb (bkbit.models.donor.Language attribute) grc (bkbit.models.donor.Language attribute) gre_LEFT_PARENTHESISBRIGHT_PARENTHESIS (bkbit.models.donor.Language attribute) great_grandchild (bkbit.models.donor.RelativeType attribute) grn (bkbit.models.donor.Language attribute) grossCOLON_brain_removalSOLIDUSdissection (bkbit.models.donor.ArtifactType attribute) GS (bkbit.models.donor.BirthCountry attribute) gsw (bkbit.models.donor.Language attribute) GT (bkbit.models.donor.BirthCountry attribute) GU (bkbit.models.donor.BirthCountry attribute) Guaifenesin (bkbit.models.donor.DrugsFound attribute) guard_links() (in module bkbit.data_translators.ait_taxonomy_translator) guj (bkbit.models.donor.Language attribute) GW (bkbit.models.donor.BirthCountry attribute) gwi (bkbit.models.donor.Language attribute) GY (bkbit.models.donor.BirthCountry attribute)

H

hai (bkbit.models.donor.Language attribute) hair (bkbit.models.donor.Tissue attribute) half_sibling (bkbit.models.donor.RelativeType attribute) Haloperidol (bkbit.models.donor.DrugsFound attribute) handedness (bkbit.models.donor.Donor attribute) Handedness (class in bkbit.models.donor) Harvard (bkbit.models.donor.Repository attribute) has_abbreviation (bkbit.models.cell_taxonomy.CellTypeSet attribute) (bkbit.models.cell_taxonomy.CellTypeTaxon attribute) has_anatomical_annotation_set (bkbit.models.anatomical_structure.ParcellationAtlas attribute) (bkbit.models.cell_taxonomy.ParcellationAtlas attribute) has_anatomical_space (bkbit.models.anatomical_structure.ParcellationAtlas attribute) (bkbit.models.cell_taxonomy.ParcellationAtlas attribute) has_attribute (bkbit.models.anatomical_structure.Activity attribute) (bkbit.models.anatomical_structure.AnatomicalAnnotationSet attribute) (bkbit.models.anatomical_structure.AnatomicalSpace attribute) (bkbit.models.anatomical_structure.Attribute attribute) (bkbit.models.anatomical_structure.BiologicalEntity attribute) (bkbit.models.anatomical_structure.Checksum attribute) (bkbit.models.anatomical_structure.Dataset attribute) (bkbit.models.anatomical_structure.Entity attribute) (bkbit.models.anatomical_structure.Gene attribute) (bkbit.models.anatomical_structure.Genome attribute) (bkbit.models.anatomical_structure.ImageDataset attribute) (bkbit.models.anatomical_structure.InformationContentEntity attribute) (bkbit.models.anatomical_structure.MaterialSample attribute) (bkbit.models.anatomical_structure.NamedThing attribute) (bkbit.models.anatomical_structure.OrganismTaxon attribute) (bkbit.models.anatomical_structure.ParcellationAtlas attribute) (bkbit.models.anatomical_structure.ParcellationColorScheme attribute) (bkbit.models.anatomical_structure.ParcellationTerm attribute) (bkbit.models.anatomical_structure.ParcellationTerminology attribute) (bkbit.models.anatomical_structure.ParcellationTermSet attribute) (bkbit.models.anatomical_structure.PhysicalEntity attribute) (bkbit.models.anatomical_structure.Procedure attribute) (bkbit.models.anatomical_structure.VersionedNamedThing attribute) (bkbit.models.cell_taxonomy.Abbreviation attribute) (bkbit.models.cell_taxonomy.Activity attribute) (bkbit.models.cell_taxonomy.AnatomicalAnnotationSet attribute) (bkbit.models.cell_taxonomy.AnatomicalSpace attribute) (bkbit.models.cell_taxonomy.Attribute attribute) (bkbit.models.cell_taxonomy.BiologicalEntity attribute) (bkbit.models.cell_taxonomy.Cell attribute) (bkbit.models.cell_taxonomy.CellTypeSet attribute) (bkbit.models.cell_taxonomy.CellTypeTaxon attribute) (bkbit.models.cell_taxonomy.CellTypeTaxonomy attribute) (bkbit.models.cell_taxonomy.Checksum attribute) (bkbit.models.cell_taxonomy.Cluster attribute) (bkbit.models.cell_taxonomy.ClusterSet attribute) (bkbit.models.cell_taxonomy.ColorPalette attribute) (bkbit.models.cell_taxonomy.Dataset attribute) (bkbit.models.cell_taxonomy.DisplayColor attribute) (bkbit.models.cell_taxonomy.Embedding attribute) (bkbit.models.cell_taxonomy.Entity attribute) (bkbit.models.cell_taxonomy.ExpressionMatrix attribute) (bkbit.models.cell_taxonomy.Gene attribute) (bkbit.models.cell_taxonomy.GeneAnnotation attribute) (bkbit.models.cell_taxonomy.Genome attribute) (bkbit.models.cell_taxonomy.GenomeAnnotation attribute) (bkbit.models.cell_taxonomy.GenomeAssembly attribute) (bkbit.models.cell_taxonomy.ImageDataset attribute) (bkbit.models.cell_taxonomy.InformationContentEntity attribute) (bkbit.models.cell_taxonomy.MaterialSample attribute) (bkbit.models.cell_taxonomy.NamedThing attribute) (bkbit.models.cell_taxonomy.OrganismTaxon attribute) (bkbit.models.cell_taxonomy.ParcellationAtlas attribute) (bkbit.models.cell_taxonomy.ParcellationColorScheme attribute) (bkbit.models.cell_taxonomy.ParcellationTerm attribute) (bkbit.models.cell_taxonomy.ParcellationTerminology attribute) (bkbit.models.cell_taxonomy.ParcellationTermSet attribute) (bkbit.models.cell_taxonomy.PhysicalEntity attribute) (bkbit.models.cell_taxonomy.Procedure attribute) (bkbit.models.cell_taxonomy.RelativeFrequencyAnalysisResult attribute) (bkbit.models.cell_taxonomy.StudyResult attribute) (bkbit.models.cell_taxonomy.VersionedNamedThing attribute) (bkbit.models.donor.Activity attribute) (bkbit.models.donor.Attribute attribute) (bkbit.models.donor.BiologicalEntity attribute) (bkbit.models.donor.Dataset attribute) (bkbit.models.donor.Donor attribute) (bkbit.models.donor.Entity attribute) (bkbit.models.donor.Gene attribute) (bkbit.models.donor.Genome attribute) (bkbit.models.donor.InformationContentEntity attribute) (bkbit.models.donor.MaterialSample attribute) (bkbit.models.donor.NamedThing attribute) (bkbit.models.donor.OrganismTaxon attribute) (bkbit.models.donor.PhysicalEntity attribute) (bkbit.models.donor.Procedure attribute) (bkbit.models.donor.RelativeFrequencyAnalysisResult attribute) (bkbit.models.donor.StudyResult attribute) (bkbit.models.genome_annotation.Activity attribute) (bkbit.models.genome_annotation.Attribute attribute) (bkbit.models.genome_annotation.BiologicalEntity attribute) (bkbit.models.genome_annotation.Checksum attribute) (bkbit.models.genome_annotation.Dataset attribute) (bkbit.models.genome_annotation.Entity attribute) (bkbit.models.genome_annotation.Gene attribute) (bkbit.models.genome_annotation.GeneAnnotation attribute) (bkbit.models.genome_annotation.Genome attribute) (bkbit.models.genome_annotation.GenomeAnnotation attribute) (bkbit.models.genome_annotation.GenomeAssembly attribute) (bkbit.models.genome_annotation.InformationContentEntity attribute) (bkbit.models.genome_annotation.MaterialSample attribute) (bkbit.models.genome_annotation.NamedThing attribute) (bkbit.models.genome_annotation.OrganismTaxon attribute) (bkbit.models.genome_annotation.PhysicalEntity attribute) (bkbit.models.genome_annotation.Procedure attribute) (bkbit.models.genome_annotation.RelativeFrequencyAnalysisResult attribute) (bkbit.models.genome_annotation.StudyResult attribute) (bkbit.models.genome_annotation.VersionedNamedThing attribute) (bkbit.models.library_generation.Activity attribute) (bkbit.models.library_generation.AmplifiedCdna attribute) (bkbit.models.library_generation.Attribute attribute) (bkbit.models.library_generation.BarcodedCellSample attribute) (bkbit.models.library_generation.BiologicalEntity attribute) (bkbit.models.library_generation.BrainSlab attribute) (bkbit.models.library_generation.CdnaAmplification attribute) (bkbit.models.library_generation.CellBarcoding attribute) (bkbit.models.library_generation.CellDissociation attribute) (bkbit.models.library_generation.CellEnrichment attribute) (bkbit.models.library_generation.Checksum attribute) (bkbit.models.library_generation.Dataset attribute) (bkbit.models.library_generation.DigitalAsset attribute) (bkbit.models.library_generation.DissectionRoiDelineation attribute) (bkbit.models.library_generation.DissectionRoiPolygon attribute) (bkbit.models.library_generation.DissociatedCellSample attribute) (bkbit.models.library_generation.Donor attribute) (bkbit.models.library_generation.EnrichedCellSample attribute) (bkbit.models.library_generation.EnrichedCellSampleSplitting attribute) (bkbit.models.library_generation.Entity attribute) (bkbit.models.library_generation.Gene attribute) (bkbit.models.library_generation.Genome attribute) (bkbit.models.library_generation.InformationContentEntity attribute) (bkbit.models.library_generation.Library attribute) (bkbit.models.library_generation.LibraryAliquot attribute) (bkbit.models.library_generation.LibraryConstruction attribute) (bkbit.models.library_generation.LibraryPool attribute) (bkbit.models.library_generation.LibraryPooling attribute) (bkbit.models.library_generation.MaterialSample attribute) (bkbit.models.library_generation.NamedThing attribute) (bkbit.models.library_generation.OrganismTaxon attribute) (bkbit.models.library_generation.PhysicalEntity attribute) (bkbit.models.library_generation.Procedure attribute) (bkbit.models.library_generation.RelativeFrequencyAnalysisResult attribute) (bkbit.models.library_generation.StudyResult attribute) (bkbit.models.library_generation.TissueDissection attribute) (bkbit.models.library_generation.TissueSample attribute) (bkbit.models.library_generation.VersionedNamedThing attribute)

has_attribute_type (bkbit.models.anatomical_structure.Attribute attribute) (bkbit.models.cell_taxonomy.Attribute attribute) (bkbit.models.donor.Attribute attribute) (bkbit.models.genome_annotation.Attribute attribute) (bkbit.models.library_generation.Attribute attribute) has_biological_sequence (bkbit.models.anatomical_structure.Gene attribute) (bkbit.models.anatomical_structure.Genome attribute) (bkbit.models.anatomical_structure.GenomicEntity attribute) (bkbit.models.cell_taxonomy.Gene attribute) (bkbit.models.cell_taxonomy.GeneAnnotation attribute) (bkbit.models.cell_taxonomy.Genome attribute) (bkbit.models.cell_taxonomy.GenomeAnnotation attribute) (bkbit.models.cell_taxonomy.GenomicEntity attribute) (bkbit.models.donor.Gene attribute) (bkbit.models.donor.Genome attribute) (bkbit.models.donor.GenomicEntity attribute) (bkbit.models.genome_annotation.Gene attribute) (bkbit.models.genome_annotation.GeneAnnotation attribute) (bkbit.models.genome_annotation.Genome attribute) (bkbit.models.genome_annotation.GenomeAnnotation attribute) (bkbit.models.genome_annotation.GenomicEntity attribute) (bkbit.models.library_generation.Gene attribute) (bkbit.models.library_generation.Genome attribute) (bkbit.models.library_generation.GenomicEntity attribute) has_embedding (bkbit.models.cell_taxonomy.CellTypeTaxonomy attribute) has_expression_matrix (bkbit.models.cell_taxonomy.CellTypeTaxonomy attribute) has_numeric_value (bkbit.models.anatomical_structure.QuantityValue attribute) (bkbit.models.cell_taxonomy.QuantityValue attribute) (bkbit.models.donor.QuantityValue attribute) (bkbit.models.genome_annotation.QuantityValue attribute) (bkbit.models.library_generation.QuantityValue attribute) has_parcellation_terminology (bkbit.models.anatomical_structure.ParcellationAtlas attribute) (bkbit.models.cell_taxonomy.ParcellationAtlas attribute) has_parent (bkbit.models.cell_taxonomy.CellTypeSet attribute) (bkbit.models.cell_taxonomy.CellTypeTaxon attribute) (bkbit.models.cell_taxonomy.Cluster attribute) has_parent_parcellation_term (bkbit.models.anatomical_structure.ParcellationTerm attribute) (bkbit.models.cell_taxonomy.ParcellationTerm attribute) has_parent_parcellation_term_set (bkbit.models.anatomical_structure.ParcellationTermSet attribute) (bkbit.models.cell_taxonomy.ParcellationTermSet attribute) has_qualitative_value (bkbit.models.anatomical_structure.Attribute attribute) (bkbit.models.cell_taxonomy.Attribute attribute) (bkbit.models.donor.Attribute attribute) (bkbit.models.genome_annotation.Attribute attribute) (bkbit.models.library_generation.Attribute attribute) has_quantitative_value (bkbit.models.anatomical_structure.Attribute attribute) (bkbit.models.cell_taxonomy.Attribute attribute) (bkbit.models.donor.Attribute attribute) (bkbit.models.genome_annotation.Attribute attribute) (bkbit.models.library_generation.Attribute attribute) has_taxonomic_rank (bkbit.models.anatomical_structure.OrganismTaxon attribute) (bkbit.models.cell_taxonomy.OrganismTaxon attribute) (bkbit.models.donor.OrganismTaxon attribute) (bkbit.models.genome_annotation.OrganismTaxon attribute) (bkbit.models.library_generation.OrganismTaxon attribute) has_unit (bkbit.models.anatomical_structure.QuantityValue attribute) (bkbit.models.cell_taxonomy.QuantityValue attribute) (bkbit.models.donor.QuantityValue attribute) (bkbit.models.genome_annotation.QuantityValue attribute) (bkbit.models.library_generation.QuantityValue attribute) has_variable (bkbit.models.cell_taxonomy.ExpressionMatrix attribute) hat (bkbit.models.donor.Language attribute) hau (bkbit.models.donor.Language attribute) haw (bkbit.models.donor.Language attribute) HBCC (bkbit.models.donor.Repository attribute) Hearing_loss_adult_onset (bkbit.models.donor.CauseOfDeath attribute) heart (bkbit.models.donor.Tissue attribute) heart_disease (bkbit.models.donor.ConditionType attribute) heb (bkbit.models.donor.Language attribute) hemisphere (bkbit.models.donor.Donor attribute) Hemisphere (class in bkbit.models.donor) hemisphere_not_available (bkbit.models.donor.Preparation attribute) hemorrhage (bkbit.models.donor.VascularType attribute) Hepatitis_A (bkbit.models.donor.TestName attribute) Hepatitis_B (bkbit.models.donor.CauseOfDeath attribute) Hepatitis_B_Core_Antibody (bkbit.models.donor.TestName attribute) Hepatitis_B_Surface_Antibody (bkbit.models.donor.TestName attribute) Hepatitis_B_Surface_Antigen (bkbit.models.donor.TestName attribute) Hepatitis_C (bkbit.models.donor.CauseOfDeath attribute) Hepatitis_C_Antibody (bkbit.models.donor.TestName attribute) her (bkbit.models.donor.Language attribute) heterosexual (bkbit.models.donor.SexualOrientation attribute) Hexobarbital (bkbit.models.donor.DrugsFound attribute) hierarchy (bkbit.models.cell_taxonomy.CellTypeTaxonomy attribute) hil (bkbit.models.donor.Language attribute) him (bkbit.models.donor.Language attribute) hin (bkbit.models.donor.Language attribute) Hispanic_or_Latino (bkbit.models.donor.Ethnicity attribute) histone_modification_marker (bkbit.models.library_generation.EnrichedCellSample attribute) hit (bkbit.models.donor.Language attribute) HIV_1_Antibody (bkbit.models.donor.TestName attribute) HIV_1SOLIDUSHIV_2 (bkbit.models.donor.TestName attribute) HIV_1SOLIDUSHIV_2_Plus_O_Antibody (bkbit.models.donor.TestName attribute) HIVSOLIDUSAIDS (bkbit.models.donor.CauseOfDeath attribute) HK (bkbit.models.donor.BirthCountry attribute) HM (bkbit.models.donor.BirthCountry attribute) hmn (bkbit.models.donor.Language attribute) hmo (bkbit.models.donor.Language attribute) HN (bkbit.models.donor.BirthCountry attribute) homicide (bkbit.models.donor.MannerOfDeath attribute) homosexual_LEFT_PARENTHESISgaySOLIDUSlesbianRIGHT_PARENTHESIS (bkbit.models.donor.SexualOrientation attribute) Hookworm_disease (bkbit.models.donor.CauseOfDeath attribute) HR (bkbit.models.donor.BirthCountry attribute) hrv (bkbit.models.donor.Language attribute) hsb (bkbit.models.donor.Language attribute) HT (bkbit.models.donor.BirthCountry attribute) HU (bkbit.models.donor.BirthCountry attribute) hun (bkbit.models.donor.Language attribute) hup (bkbit.models.donor.Language attribute) Hydrocodone (bkbit.models.donor.DrugsFound attribute) Hydromorphone (bkbit.models.donor.DrugsFound attribute) Hydroxybupropion (bkbit.models.donor.DrugsFound attribute) Hydroxychloroquine (bkbit.models.donor.DrugsFound attribute) Hydroxyethylflurazepam (bkbit.models.donor.DrugsFound attribute) Hydroxytriazolam (bkbit.models.donor.DrugsFound attribute) Hydroxyzine (bkbit.models.donor.DrugsFound attribute) hye_LEFT_PARENTHESISTRIGHT_PARENTHESIS (bkbit.models.donor.Language attribute) hypertension (bkbit.models.donor.ConditionType attribute) Hypertensive_disorders (bkbit.models.donor.CauseOfDeath attribute) Hypertensive_heart_disease (bkbit.models.donor.CauseOfDeath attribute) hypoxia (bkbit.models.donor.PerinatalEvent attribute)

I

iba (bkbit.models.donor.Language attribute) ibo (bkbit.models.donor.Language attribute) Ibuprofen (bkbit.models.donor.DrugsFound attribute) ice_LEFT_PARENTHESISBRIGHT_PARENTHESIS (bkbit.models.donor.Language attribute) id (bkbit.models.anatomical_structure.Activity attribute) (bkbit.models.anatomical_structure.AnatomicalAnnotationSet attribute) (bkbit.models.anatomical_structure.AnatomicalSpace attribute) (bkbit.models.anatomical_structure.Attribute attribute) (bkbit.models.anatomical_structure.BiologicalEntity attribute) (bkbit.models.anatomical_structure.Checksum attribute) (bkbit.models.anatomical_structure.Dataset attribute) (bkbit.models.anatomical_structure.Entity attribute) (bkbit.models.anatomical_structure.Gene attribute) (bkbit.models.anatomical_structure.Genome attribute) (bkbit.models.anatomical_structure.ImageDataset attribute) (bkbit.models.anatomical_structure.InformationContentEntity attribute) (bkbit.models.anatomical_structure.MaterialSample attribute) (bkbit.models.anatomical_structure.NamedThing attribute) (bkbit.models.anatomical_structure.OntologyClass attribute) (bkbit.models.anatomical_structure.OrganismTaxon attribute) (bkbit.models.anatomical_structure.ParcellationAtlas attribute) (bkbit.models.anatomical_structure.ParcellationColorScheme attribute) (bkbit.models.anatomical_structure.ParcellationTerm attribute) (bkbit.models.anatomical_structure.ParcellationTerminology attribute) (bkbit.models.anatomical_structure.ParcellationTermSet attribute) (bkbit.models.anatomical_structure.PhysicalEntity attribute) (bkbit.models.anatomical_structure.Procedure attribute) (bkbit.models.anatomical_structure.TaxonomicRank attribute) (bkbit.models.anatomical_structure.VersionedNamedThing attribute) (bkbit.models.cell_taxonomy.Abbreviation attribute) (bkbit.models.cell_taxonomy.Activity attribute) (bkbit.models.cell_taxonomy.AnatomicalAnnotationSet attribute) (bkbit.models.cell_taxonomy.AnatomicalSpace attribute) (bkbit.models.cell_taxonomy.Attribute attribute) (bkbit.models.cell_taxonomy.BiologicalEntity attribute) (bkbit.models.cell_taxonomy.Cell attribute) (bkbit.models.cell_taxonomy.CellTypeSet attribute) (bkbit.models.cell_taxonomy.CellTypeTaxon attribute) (bkbit.models.cell_taxonomy.CellTypeTaxonomy attribute) (bkbit.models.cell_taxonomy.Checksum attribute) (bkbit.models.cell_taxonomy.Cluster attribute) (bkbit.models.cell_taxonomy.ClusterSet attribute) (bkbit.models.cell_taxonomy.ColorPalette attribute) (bkbit.models.cell_taxonomy.Dataset attribute) (bkbit.models.cell_taxonomy.DisplayColor attribute) (bkbit.models.cell_taxonomy.Embedding attribute) (bkbit.models.cell_taxonomy.Entity attribute) (bkbit.models.cell_taxonomy.ExpressionMatrix attribute) (bkbit.models.cell_taxonomy.Gene attribute) (bkbit.models.cell_taxonomy.GeneAnnotation attribute) (bkbit.models.cell_taxonomy.Genome attribute) (bkbit.models.cell_taxonomy.GenomeAnnotation attribute) (bkbit.models.cell_taxonomy.GenomeAssembly attribute) (bkbit.models.cell_taxonomy.ImageDataset attribute) (bkbit.models.cell_taxonomy.InformationContentEntity attribute) (bkbit.models.cell_taxonomy.MaterialSample attribute) (bkbit.models.cell_taxonomy.NamedThing attribute) (bkbit.models.cell_taxonomy.OntologyClass attribute) (bkbit.models.cell_taxonomy.OrganismTaxon attribute) (bkbit.models.cell_taxonomy.ParcellationAtlas attribute) (bkbit.models.cell_taxonomy.ParcellationColorScheme attribute) (bkbit.models.cell_taxonomy.ParcellationTerm attribute) (bkbit.models.cell_taxonomy.ParcellationTerminology attribute) (bkbit.models.cell_taxonomy.ParcellationTermSet attribute) (bkbit.models.cell_taxonomy.PhysicalEntity attribute) (bkbit.models.cell_taxonomy.Procedure attribute) (bkbit.models.cell_taxonomy.RelativeFrequencyAnalysisResult attribute) (bkbit.models.cell_taxonomy.StudyResult attribute) (bkbit.models.cell_taxonomy.TaxonomicRank attribute) (bkbit.models.cell_taxonomy.VersionedNamedThing attribute) (bkbit.models.donor.Activity attribute) (bkbit.models.donor.Attribute attribute) (bkbit.models.donor.BiologicalEntity attribute) ID (bkbit.models.donor.BirthCountry attribute) id (bkbit.models.donor.Dataset attribute) (bkbit.models.donor.Donor attribute) (bkbit.models.donor.Entity attribute) (bkbit.models.donor.Gene attribute) (bkbit.models.donor.Genome attribute) (bkbit.models.donor.InformationContentEntity attribute) (bkbit.models.donor.MaterialSample attribute) (bkbit.models.donor.NamedThing attribute) (bkbit.models.donor.OntologyClass attribute) (bkbit.models.donor.OrganismTaxon attribute) (bkbit.models.donor.PhysicalEntity attribute) (bkbit.models.donor.Procedure attribute) (bkbit.models.donor.RelativeFrequencyAnalysisResult attribute) (bkbit.models.donor.StudyResult attribute) (bkbit.models.donor.TaxonomicRank attribute) (bkbit.models.genome_annotation.Activity attribute) (bkbit.models.genome_annotation.Attribute attribute) (bkbit.models.genome_annotation.BiologicalEntity attribute) (bkbit.models.genome_annotation.Checksum attribute) (bkbit.models.genome_annotation.Dataset attribute) (bkbit.models.genome_annotation.Entity attribute) (bkbit.models.genome_annotation.Gene attribute) (bkbit.models.genome_annotation.GeneAnnotation attribute) (bkbit.models.genome_annotation.Genome attribute) (bkbit.models.genome_annotation.GenomeAnnotation attribute) (bkbit.models.genome_annotation.GenomeAssembly attribute) (bkbit.models.genome_annotation.InformationContentEntity attribute) (bkbit.models.genome_annotation.MaterialSample attribute) (bkbit.models.genome_annotation.NamedThing attribute) (bkbit.models.genome_annotation.OntologyClass attribute) (bkbit.models.genome_annotation.OrganismTaxon attribute) (bkbit.models.genome_annotation.PhysicalEntity attribute) (bkbit.models.genome_annotation.Procedure attribute) (bkbit.models.genome_annotation.RelativeFrequencyAnalysisResult attribute) (bkbit.models.genome_annotation.StudyResult attribute) (bkbit.models.genome_annotation.TaxonomicRank attribute) (bkbit.models.genome_annotation.VersionedNamedThing attribute) (bkbit.models.library_generation.Activity attribute) (bkbit.models.library_generation.AmplifiedCdna attribute) (bkbit.models.library_generation.Attribute attribute) (bkbit.models.library_generation.BarcodedCellSample attribute) (bkbit.models.library_generation.BiologicalEntity attribute) (bkbit.models.library_generation.BrainSlab attribute) (bkbit.models.library_generation.CdnaAmplification attribute) (bkbit.models.library_generation.CellBarcoding attribute) (bkbit.models.library_generation.CellDissociation attribute) (bkbit.models.library_generation.CellEnrichment attribute) (bkbit.models.library_generation.Checksum attribute) (bkbit.models.library_generation.Dataset attribute) (bkbit.models.library_generation.DigitalAsset attribute) (bkbit.models.library_generation.DissectionRoiDelineation attribute) (bkbit.models.library_generation.DissectionRoiPolygon attribute) (bkbit.models.library_generation.DissociatedCellSample attribute) (bkbit.models.library_generation.Donor attribute) (bkbit.models.library_generation.EnrichedCellSample attribute) (bkbit.models.library_generation.EnrichedCellSampleSplitting attribute) (bkbit.models.library_generation.Entity attribute) (bkbit.models.library_generation.Gene attribute) (bkbit.models.library_generation.Genome attribute) (bkbit.models.library_generation.InformationContentEntity attribute) (bkbit.models.library_generation.Library attribute) (bkbit.models.library_generation.LibraryAliquot attribute) (bkbit.models.library_generation.LibraryConstruction attribute) (bkbit.models.library_generation.LibraryPool attribute) (bkbit.models.library_generation.LibraryPooling attribute) (bkbit.models.library_generation.MaterialSample attribute) (bkbit.models.library_generation.NamedThing attribute) (bkbit.models.library_generation.OntologyClass attribute) (bkbit.models.library_generation.OrganismTaxon attribute) (bkbit.models.library_generation.PhysicalEntity attribute) (bkbit.models.library_generation.Procedure attribute) (bkbit.models.library_generation.RelativeFrequencyAnalysisResult attribute) (bkbit.models.library_generation.StudyResult attribute) (bkbit.models.library_generation.TaxonomicRank attribute) (bkbit.models.library_generation.TissueDissection attribute) (bkbit.models.library_generation.TissueSample attribute) (bkbit.models.library_generation.VersionedNamedThing attribute) ido (bkbit.models.donor.Language attribute) IE (bkbit.models.donor.BirthCountry attribute) iii (bkbit.models.donor.Language attribute) ijo (bkbit.models.donor.Language attribute) iku (bkbit.models.donor.Language attribute) IL (bkbit.models.donor.BirthCountry attribute) ile (bkbit.models.donor.Language attribute) ileum (bkbit.models.donor.Tissue attribute) Ill_defined_circulatory_diseases (bkbit.models.donor.CauseOfDeath attribute) Ill_defined_diseases (bkbit.models.donor.CauseOfDeath attribute) Ill_defined_injuriesSOLIDUSaccidents (bkbit.models.donor.CauseOfDeath attribute) Ill_defined_malignant_neoplasms (bkbit.models.donor.CauseOfDeath attribute) ilo (bkbit.models.donor.Language attribute) Iloperidone (bkbit.models.donor.DrugsFound attribute) IM (bkbit.models.donor.BirthCountry attribute) ImageDataset (class in bkbit.models.anatomical_structure) (class in bkbit.models.cell_taxonomy) Imipramine (bkbit.models.donor.DrugsFound attribute) IN (bkbit.models.donor.BirthCountry attribute) in_taxon (bkbit.models.anatomical_structure.BiologicalEntity attribute) (bkbit.models.anatomical_structure.Gene attribute) (bkbit.models.anatomical_structure.Genome attribute) (bkbit.models.anatomical_structure.ThingWithTaxon attribute) (bkbit.models.cell_taxonomy.BiologicalEntity attribute) (bkbit.models.cell_taxonomy.Gene attribute) (bkbit.models.cell_taxonomy.GeneAnnotation attribute) (bkbit.models.cell_taxonomy.Genome attribute) (bkbit.models.cell_taxonomy.GenomeAnnotation attribute) (bkbit.models.cell_taxonomy.GenomeAssembly attribute) (bkbit.models.cell_taxonomy.ThingWithTaxon attribute) (bkbit.models.donor.BiologicalEntity attribute) (bkbit.models.donor.Donor attribute) (bkbit.models.donor.Gene attribute) (bkbit.models.donor.Genome attribute) (bkbit.models.donor.ThingWithTaxon attribute) (bkbit.models.genome_annotation.BiologicalEntity attribute) (bkbit.models.genome_annotation.Gene attribute) (bkbit.models.genome_annotation.GeneAnnotation attribute) (bkbit.models.genome_annotation.Genome attribute) (bkbit.models.genome_annotation.GenomeAnnotation attribute) (bkbit.models.genome_annotation.GenomeAssembly attribute) (bkbit.models.genome_annotation.ThingWithTaxon attribute) (bkbit.models.library_generation.BiologicalEntity attribute) (bkbit.models.library_generation.Donor attribute) (bkbit.models.library_generation.Gene attribute) (bkbit.models.library_generation.Genome attribute) (bkbit.models.library_generation.ThingWithTaxon attribute) in_taxon_label (bkbit.models.anatomical_structure.BiologicalEntity attribute) (bkbit.models.anatomical_structure.Gene attribute) (bkbit.models.anatomical_structure.Genome attribute) (bkbit.models.anatomical_structure.ThingWithTaxon attribute) (bkbit.models.cell_taxonomy.BiologicalEntity attribute) (bkbit.models.cell_taxonomy.Gene attribute) (bkbit.models.cell_taxonomy.GeneAnnotation attribute) (bkbit.models.cell_taxonomy.Genome attribute) (bkbit.models.cell_taxonomy.GenomeAnnotation attribute) (bkbit.models.cell_taxonomy.GenomeAssembly attribute) (bkbit.models.cell_taxonomy.ThingWithTaxon attribute) (bkbit.models.donor.BiologicalEntity attribute) (bkbit.models.donor.Donor attribute) (bkbit.models.donor.Gene attribute) (bkbit.models.donor.Genome attribute) (bkbit.models.donor.ThingWithTaxon attribute) (bkbit.models.genome_annotation.BiologicalEntity attribute) (bkbit.models.genome_annotation.Gene attribute) (bkbit.models.genome_annotation.GeneAnnotation attribute) (bkbit.models.genome_annotation.Genome attribute) (bkbit.models.genome_annotation.GenomeAnnotation attribute) (bkbit.models.genome_annotation.GenomeAssembly attribute) (bkbit.models.genome_annotation.ThingWithTaxon attribute) (bkbit.models.library_generation.BiologicalEntity attribute) (bkbit.models.library_generation.Donor attribute) (bkbit.models.library_generation.Gene attribute) (bkbit.models.library_generation.Genome attribute) (bkbit.models.library_generation.ThingWithTaxon attribute) ina (bkbit.models.donor.Language attribute) inc (bkbit.models.donor.Language attribute) IncomeRange (class in bkbit.models.donor) ind (bkbit.models.donor.Language attribute) ine (bkbit.models.donor.Language attribute) Infectious_and_parasitic_diseases (bkbit.models.donor.CauseOfDeath attribute) infectious_testings_data_available (bkbit.models.donor.Donor attribute) infectious_type_specify (bkbit.models.donor.Donor attribute) inferior_to_superior (bkbit.models.anatomical_structure.ANATOMICALDIRECTION attribute) (bkbit.models.cell_taxonomy.ANATOMICALDIRECTION attribute) Inflammatory_bowel_disease (bkbit.models.donor.CauseOfDeath attribute) Inflammatory_heart_diseases (bkbit.models.donor.CauseOfDeath attribute) inflammatory_type_specify (bkbit.models.donor.Donor attribute) InformantRelationship (class in bkbit.models.donor) information_content (bkbit.models.cell_taxonomy.Abbreviation attribute) (bkbit.models.cell_taxonomy.Activity attribute) (bkbit.models.cell_taxonomy.AnatomicalAnnotationSet attribute) (bkbit.models.cell_taxonomy.AnatomicalSpace attribute) (bkbit.models.cell_taxonomy.Attribute attribute) (bkbit.models.cell_taxonomy.BiologicalEntity attribute) (bkbit.models.cell_taxonomy.Cell attribute) (bkbit.models.cell_taxonomy.CellTypeSet attribute) (bkbit.models.cell_taxonomy.CellTypeTaxon attribute) (bkbit.models.cell_taxonomy.CellTypeTaxonomy attribute) (bkbit.models.cell_taxonomy.Cluster attribute) (bkbit.models.cell_taxonomy.ClusterSet attribute) (bkbit.models.cell_taxonomy.ColorPalette attribute) (bkbit.models.cell_taxonomy.Dataset attribute) (bkbit.models.cell_taxonomy.DisplayColor attribute) (bkbit.models.cell_taxonomy.Embedding attribute) (bkbit.models.cell_taxonomy.ExpressionMatrix attribute) (bkbit.models.cell_taxonomy.Gene attribute) (bkbit.models.cell_taxonomy.GeneAnnotation attribute) (bkbit.models.cell_taxonomy.Genome attribute) (bkbit.models.cell_taxonomy.GenomeAnnotation attribute) (bkbit.models.cell_taxonomy.GenomeAssembly attribute) (bkbit.models.cell_taxonomy.ImageDataset attribute) (bkbit.models.cell_taxonomy.InformationContentEntity attribute) (bkbit.models.cell_taxonomy.MaterialSample attribute) (bkbit.models.cell_taxonomy.NamedThing attribute) (bkbit.models.cell_taxonomy.OrganismTaxon attribute) (bkbit.models.cell_taxonomy.ParcellationAtlas attribute) (bkbit.models.cell_taxonomy.ParcellationColorScheme attribute) (bkbit.models.cell_taxonomy.ParcellationTerm attribute) (bkbit.models.cell_taxonomy.ParcellationTerminology attribute) (bkbit.models.cell_taxonomy.ParcellationTermSet attribute) (bkbit.models.cell_taxonomy.PhysicalEntity attribute) (bkbit.models.cell_taxonomy.Procedure attribute) (bkbit.models.cell_taxonomy.RelativeFrequencyAnalysisResult attribute) (bkbit.models.cell_taxonomy.StudyResult attribute) (bkbit.models.cell_taxonomy.VersionedNamedThing attribute) (bkbit.models.donor.Activity attribute) (bkbit.models.donor.Attribute attribute) (bkbit.models.donor.BiologicalEntity attribute) (bkbit.models.donor.Dataset attribute) (bkbit.models.donor.Donor attribute) (bkbit.models.donor.Gene attribute) (bkbit.models.donor.Genome attribute) (bkbit.models.donor.InformationContentEntity attribute) (bkbit.models.donor.MaterialSample attribute) (bkbit.models.donor.NamedThing attribute) (bkbit.models.donor.OrganismTaxon attribute) (bkbit.models.donor.PhysicalEntity attribute) (bkbit.models.donor.Procedure attribute) (bkbit.models.donor.RelativeFrequencyAnalysisResult attribute) (bkbit.models.donor.StudyResult attribute) (bkbit.models.genome_annotation.Activity attribute) (bkbit.models.genome_annotation.Attribute attribute) (bkbit.models.genome_annotation.BiologicalEntity attribute) (bkbit.models.genome_annotation.Dataset attribute) (bkbit.models.genome_annotation.Gene attribute) (bkbit.models.genome_annotation.GeneAnnotation attribute) (bkbit.models.genome_annotation.Genome attribute) (bkbit.models.genome_annotation.GenomeAnnotation attribute) (bkbit.models.genome_annotation.GenomeAssembly attribute) (bkbit.models.genome_annotation.InformationContentEntity attribute) (bkbit.models.genome_annotation.MaterialSample attribute) (bkbit.models.genome_annotation.NamedThing attribute) (bkbit.models.genome_annotation.OrganismTaxon attribute) (bkbit.models.genome_annotation.PhysicalEntity attribute) (bkbit.models.genome_annotation.Procedure attribute) (bkbit.models.genome_annotation.RelativeFrequencyAnalysisResult attribute) (bkbit.models.genome_annotation.StudyResult attribute) (bkbit.models.genome_annotation.VersionedNamedThing attribute) (bkbit.models.library_generation.Activity attribute) (bkbit.models.library_generation.AmplifiedCdna attribute) (bkbit.models.library_generation.Attribute attribute) (bkbit.models.library_generation.BarcodedCellSample attribute) (bkbit.models.library_generation.BiologicalEntity attribute) (bkbit.models.library_generation.BrainSlab attribute) (bkbit.models.library_generation.CdnaAmplification attribute) (bkbit.models.library_generation.CellBarcoding attribute) (bkbit.models.library_generation.CellDissociation attribute) (bkbit.models.library_generation.CellEnrichment attribute) (bkbit.models.library_generation.Dataset attribute) (bkbit.models.library_generation.DigitalAsset attribute) (bkbit.models.library_generation.DissectionRoiDelineation attribute) (bkbit.models.library_generation.DissociatedCellSample attribute) (bkbit.models.library_generation.Donor attribute) (bkbit.models.library_generation.EnrichedCellSample attribute) (bkbit.models.library_generation.EnrichedCellSampleSplitting attribute) (bkbit.models.library_generation.Gene attribute) (bkbit.models.library_generation.Genome attribute) (bkbit.models.library_generation.InformationContentEntity attribute) (bkbit.models.library_generation.Library attribute) (bkbit.models.library_generation.LibraryAliquot attribute) (bkbit.models.library_generation.LibraryConstruction attribute) (bkbit.models.library_generation.LibraryPool attribute) (bkbit.models.library_generation.LibraryPooling attribute) (bkbit.models.library_generation.MaterialSample attribute) (bkbit.models.library_generation.NamedThing attribute) (bkbit.models.library_generation.OrganismTaxon attribute) (bkbit.models.library_generation.PhysicalEntity attribute) (bkbit.models.library_generation.Procedure attribute) (bkbit.models.library_generation.RelativeFrequencyAnalysisResult attribute) (bkbit.models.library_generation.StudyResult attribute) (bkbit.models.library_generation.TissueDissection attribute) (bkbit.models.library_generation.TissueSample attribute) (bkbit.models.library_generation.VersionedNamedThing attribute)

InformationContentEntity (class in bkbit.models.anatomical_structure) (class in bkbit.models.cell_taxonomy) (class in bkbit.models.donor) (class in bkbit.models.genome_annotation) (class in bkbit.models.library_generation) inh (bkbit.models.donor.Language attribute) Injuries (bkbit.models.donor.CauseOfDeath attribute) input_ng (bkbit.models.library_generation.Library attribute) input_quantity_count (bkbit.models.library_generation.BarcodedCellSample attribute) Insomnia_LEFT_PARENTHESISprimaryRIGHT_PARENTHESIS (bkbit.models.donor.CauseOfDeath attribute) insufficient_data (bkbit.models.donor.ConfidenceLevel attribute) Intentional_injuries (bkbit.models.donor.CauseOfDeath attribute) internal_identifier (bkbit.models.anatomical_structure.ParcellationAnnotation attribute) (bkbit.models.cell_taxonomy.ParcellationAnnotation attribute) intersex (bkbit.models.donor.Sex attribute) Intestinal_nematode_infections (bkbit.models.donor.CauseOfDeath attribute) intraparenchymal_hemorrhage (bkbit.models.donor.PerinatalEvent attribute) intraventricular_hemorrhage (bkbit.models.donor.PerinatalEvent attribute) intrinsic (bkbit.models.donor.NeoplasticType attribute) investigator_impression (bkbit.models.donor.ConfidenceLevel attribute) IO (bkbit.models.donor.BirthCountry attribute) Iodine_deficiency (bkbit.models.donor.CauseOfDeath attribute) ipk (bkbit.models.donor.Language attribute) IQ (bkbit.models.donor.BirthCountry attribute) IR (bkbit.models.donor.BirthCountry attribute) ira (bkbit.models.donor.Language attribute) iri (bkbit.models.anatomical_structure.Activity attribute) (bkbit.models.anatomical_structure.AnatomicalAnnotationSet attribute) (bkbit.models.anatomical_structure.AnatomicalSpace attribute) (bkbit.models.anatomical_structure.Attribute attribute) (bkbit.models.anatomical_structure.BiologicalEntity attribute) (bkbit.models.anatomical_structure.Checksum attribute) (bkbit.models.anatomical_structure.Dataset attribute) (bkbit.models.anatomical_structure.Entity attribute) (bkbit.models.anatomical_structure.Gene attribute) (bkbit.models.anatomical_structure.Genome attribute) (bkbit.models.anatomical_structure.ImageDataset attribute) (bkbit.models.anatomical_structure.InformationContentEntity attribute) (bkbit.models.anatomical_structure.MaterialSample attribute) (bkbit.models.anatomical_structure.NamedThing attribute) (bkbit.models.anatomical_structure.OrganismTaxon attribute) (bkbit.models.anatomical_structure.ParcellationAtlas attribute) (bkbit.models.anatomical_structure.ParcellationColorScheme attribute) (bkbit.models.anatomical_structure.ParcellationTerm attribute) (bkbit.models.anatomical_structure.ParcellationTerminology attribute) (bkbit.models.anatomical_structure.ParcellationTermSet attribute) (bkbit.models.anatomical_structure.PhysicalEntity attribute) (bkbit.models.anatomical_structure.Procedure attribute) (bkbit.models.anatomical_structure.VersionedNamedThing attribute) (bkbit.models.cell_taxonomy.Abbreviation attribute) (bkbit.models.cell_taxonomy.Activity attribute) (bkbit.models.cell_taxonomy.AnatomicalAnnotationSet attribute) (bkbit.models.cell_taxonomy.AnatomicalSpace attribute) (bkbit.models.cell_taxonomy.Attribute attribute) (bkbit.models.cell_taxonomy.BiologicalEntity attribute) (bkbit.models.cell_taxonomy.Cell attribute) (bkbit.models.cell_taxonomy.CellTypeSet attribute) (bkbit.models.cell_taxonomy.CellTypeTaxon attribute) (bkbit.models.cell_taxonomy.CellTypeTaxonomy attribute) (bkbit.models.cell_taxonomy.Checksum attribute) (bkbit.models.cell_taxonomy.Cluster attribute) (bkbit.models.cell_taxonomy.ClusterSet attribute) (bkbit.models.cell_taxonomy.ColorPalette attribute) (bkbit.models.cell_taxonomy.Dataset attribute) (bkbit.models.cell_taxonomy.DisplayColor attribute) (bkbit.models.cell_taxonomy.Embedding attribute) (bkbit.models.cell_taxonomy.Entity attribute) (bkbit.models.cell_taxonomy.ExpressionMatrix attribute) (bkbit.models.cell_taxonomy.Gene attribute) (bkbit.models.cell_taxonomy.GeneAnnotation attribute) (bkbit.models.cell_taxonomy.Genome attribute) (bkbit.models.cell_taxonomy.GenomeAnnotation attribute) (bkbit.models.cell_taxonomy.GenomeAssembly attribute) (bkbit.models.cell_taxonomy.ImageDataset attribute) (bkbit.models.cell_taxonomy.InformationContentEntity attribute) (bkbit.models.cell_taxonomy.MaterialSample attribute) (bkbit.models.cell_taxonomy.NamedThing attribute) (bkbit.models.cell_taxonomy.OrganismTaxon attribute) (bkbit.models.cell_taxonomy.ParcellationAtlas attribute) (bkbit.models.cell_taxonomy.ParcellationColorScheme attribute) (bkbit.models.cell_taxonomy.ParcellationTerm attribute) (bkbit.models.cell_taxonomy.ParcellationTerminology attribute) (bkbit.models.cell_taxonomy.ParcellationTermSet attribute) (bkbit.models.cell_taxonomy.PhysicalEntity attribute) (bkbit.models.cell_taxonomy.Procedure attribute) (bkbit.models.cell_taxonomy.RelativeFrequencyAnalysisResult attribute) (bkbit.models.cell_taxonomy.StudyResult attribute) (bkbit.models.cell_taxonomy.VersionedNamedThing attribute) (bkbit.models.donor.Activity attribute) (bkbit.models.donor.Attribute attribute) (bkbit.models.donor.BiologicalEntity attribute) (bkbit.models.donor.Dataset attribute) (bkbit.models.donor.Donor attribute) (bkbit.models.donor.Entity attribute) (bkbit.models.donor.Gene attribute) (bkbit.models.donor.Genome attribute) (bkbit.models.donor.InformationContentEntity attribute) (bkbit.models.donor.MaterialSample attribute) (bkbit.models.donor.NamedThing attribute) (bkbit.models.donor.OrganismTaxon attribute) (bkbit.models.donor.PhysicalEntity attribute) (bkbit.models.donor.Procedure attribute) (bkbit.models.donor.RelativeFrequencyAnalysisResult attribute) (bkbit.models.donor.StudyResult attribute) (bkbit.models.genome_annotation.Activity attribute) (bkbit.models.genome_annotation.Attribute attribute) (bkbit.models.genome_annotation.BiologicalEntity attribute) (bkbit.models.genome_annotation.Checksum attribute) (bkbit.models.genome_annotation.Dataset attribute) (bkbit.models.genome_annotation.Entity attribute) (bkbit.models.genome_annotation.Gene attribute) (bkbit.models.genome_annotation.GeneAnnotation attribute) (bkbit.models.genome_annotation.Genome attribute) (bkbit.models.genome_annotation.GenomeAnnotation attribute) (bkbit.models.genome_annotation.GenomeAssembly attribute) (bkbit.models.genome_annotation.InformationContentEntity attribute) (bkbit.models.genome_annotation.MaterialSample attribute) (bkbit.models.genome_annotation.NamedThing attribute) (bkbit.models.genome_annotation.OrganismTaxon attribute) (bkbit.models.genome_annotation.PhysicalEntity attribute) (bkbit.models.genome_annotation.Procedure attribute) (bkbit.models.genome_annotation.RelativeFrequencyAnalysisResult attribute) (bkbit.models.genome_annotation.StudyResult attribute) (bkbit.models.genome_annotation.VersionedNamedThing attribute) (bkbit.models.library_generation.Activity attribute) (bkbit.models.library_generation.AmplifiedCdna attribute) (bkbit.models.library_generation.Attribute attribute) (bkbit.models.library_generation.BarcodedCellSample attribute) (bkbit.models.library_generation.BiologicalEntity attribute) (bkbit.models.library_generation.BrainSlab attribute) (bkbit.models.library_generation.CdnaAmplification attribute) (bkbit.models.library_generation.CellBarcoding attribute) (bkbit.models.library_generation.CellDissociation attribute) (bkbit.models.library_generation.CellEnrichment attribute) (bkbit.models.library_generation.Checksum attribute) (bkbit.models.library_generation.Dataset attribute) (bkbit.models.library_generation.DigitalAsset attribute) (bkbit.models.library_generation.DissectionRoiDelineation attribute) (bkbit.models.library_generation.DissectionRoiPolygon attribute) (bkbit.models.library_generation.DissociatedCellSample attribute) (bkbit.models.library_generation.Donor attribute) (bkbit.models.library_generation.EnrichedCellSample attribute) (bkbit.models.library_generation.EnrichedCellSampleSplitting attribute) (bkbit.models.library_generation.Entity attribute) (bkbit.models.library_generation.Gene attribute) (bkbit.models.library_generation.Genome attribute) (bkbit.models.library_generation.InformationContentEntity attribute) (bkbit.models.library_generation.Library attribute) (bkbit.models.library_generation.LibraryAliquot attribute) (bkbit.models.library_generation.LibraryConstruction attribute) (bkbit.models.library_generation.LibraryPool attribute) (bkbit.models.library_generation.LibraryPooling attribute) (bkbit.models.library_generation.MaterialSample attribute) (bkbit.models.library_generation.NamedThing attribute) (bkbit.models.library_generation.OrganismTaxon attribute) (bkbit.models.library_generation.PhysicalEntity attribute) (bkbit.models.library_generation.Procedure attribute) (bkbit.models.library_generation.RelativeFrequencyAnalysisResult attribute) (bkbit.models.library_generation.StudyResult attribute) (bkbit.models.library_generation.TissueDissection attribute) (bkbit.models.library_generation.TissueSample attribute) (bkbit.models.library_generation.VersionedNamedThing attribute) iro (bkbit.models.donor.Language attribute) Iron_deficiency_anaemia (bkbit.models.donor.CauseOfDeath attribute) IS (bkbit.models.donor.BirthCountry attribute) is_color_for_set (bkbit.models.cell_taxonomy.DisplayColor attribute) is_color_for_taxon (bkbit.models.cell_taxonomy.DisplayColor attribute) is_link() (in module bkbit.data_translators.ait_taxonomy_translator) is_palette_for (bkbit.models.cell_taxonomy.ColorPalette attribute) is_primary_data (bkbit.models.cell_taxonomy.Cell attribute) Ischaemic_heart_disease (bkbit.models.donor.CauseOfDeath attribute) isl_LEFT_PARENTHESISTRIGHT_PARENTHESIS (bkbit.models.donor.Language attribute) Isopropanol (bkbit.models.donor.DrugsFound attribute) IT (bkbit.models.donor.BirthCountry attribute) ita (bkbit.models.donor.Language attribute)

J

Japanese_encephalitis (bkbit.models.donor.CauseOfDeath attribute) jav (bkbit.models.donor.Language attribute) jbo (bkbit.models.donor.Language attribute) JE (bkbit.models.donor.BirthCountry attribute) jejunum (bkbit.models.donor.Tissue attribute) JM (bkbit.models.donor.BirthCountry attribute)

JO (bkbit.models.donor.BirthCountry attribute) JP (bkbit.models.donor.BirthCountry attribute) jpn (bkbit.models.donor.Language attribute) jpr (bkbit.models.donor.Language attribute) jrb (bkbit.models.donor.Language attribute) jwt_token (bkbit.data_translators.library_generation_translator.SpecimenPortal attribute)

K

kaa (bkbit.models.donor.Language attribute) kab (bkbit.models.donor.Language attribute) kac (bkbit.models.donor.Language attribute) kal (bkbit.models.donor.Language attribute) kam (bkbit.models.donor.Language attribute) kan (bkbit.models.donor.Language attribute) kar (bkbit.models.donor.Language attribute) kas (bkbit.models.donor.Language attribute) kat_LEFT_PARENTHESISTRIGHT_PARENTHESIS (bkbit.models.donor.Language attribute) kau (bkbit.models.donor.Language attribute) kaw (bkbit.models.donor.Language attribute) kaz (bkbit.models.donor.Language attribute) kbd (bkbit.models.donor.Language attribute) KE (bkbit.models.donor.BirthCountry attribute) Ketamine (bkbit.models.donor.DrugsFound attribute) KG (bkbit.models.donor.BirthCountry attribute) KH (bkbit.models.donor.BirthCountry attribute) kha (bkbit.models.donor.Language attribute) khi (bkbit.models.donor.Language attribute) khm (bkbit.models.donor.Language attribute) kho (bkbit.models.donor.Language attribute) KI (bkbit.models.donor.BirthCountry attribute) kidney (bkbit.models.donor.Tissue attribute) Kidney_cancer (bkbit.models.donor.CauseOfDeath attribute) kik (bkbit.models.donor.Language attribute)

kin (bkbit.models.donor.Language attribute) kir (bkbit.models.donor.Language attribute) KM (bkbit.models.donor.BirthCountry attribute) kmb (bkbit.models.donor.Language attribute) KN (bkbit.models.donor.BirthCountry attribute) KNOWN_DATABASE_PREFIXES (in module bkbit.data_translators.ait_taxonomy_translator) kok (bkbit.models.donor.Language attribute) kom (bkbit.models.donor.Language attribute) kon (bkbit.models.donor.Language attribute) kor (bkbit.models.donor.Language attribute) kos (bkbit.models.donor.Language attribute) KP (bkbit.models.donor.BirthCountry attribute) kpe (bkbit.models.donor.Language attribute) KR (bkbit.models.donor.BirthCountry attribute) krc (bkbit.models.donor.Language attribute) krl (bkbit.models.donor.Language attribute) kro (bkbit.models.donor.Language attribute) kru (bkbit.models.donor.Language attribute) kua (bkbit.models.donor.Language attribute) kum (bkbit.models.donor.Language attribute) kur (bkbit.models.donor.Language attribute) kut (bkbit.models.donor.Language attribute) KW (bkbit.models.donor.BirthCountry attribute) KY (bkbit.models.donor.BirthCountry attribute) KZ (bkbit.models.donor.BirthCountry attribute)

L

LA (bkbit.models.donor.BirthCountry attribute) label (bkbit.data_translators.ait_taxonomy_translator.GeneIndex attribute) Lacosamide (bkbit.models.donor.DrugsFound attribute) lad (bkbit.models.donor.Language attribute) lah (bkbit.models.donor.Language attribute) lam (bkbit.models.donor.Language attribute) Lamotrigine (bkbit.models.donor.DrugsFound attribute) Language (class in bkbit.models.donor) lao (bkbit.models.donor.Language attribute) Larynx_cancer (bkbit.models.donor.CauseOfDeath attribute) lat (bkbit.models.donor.Language attribute) lav (bkbit.models.donor.Language attribute) LB (bkbit.models.donor.BirthCountry attribute) LC (bkbit.models.donor.BirthCountry attribute) left (bkbit.models.donor.Handedness attribute) (bkbit.models.donor.Hemisphere attribute) left_hemisphere_prep_2 (bkbit.models.donor.Donor attribute) left_hemisphere_preparation (bkbit.models.donor.Donor attribute) left_to_right (bkbit.models.anatomical_structure.ANATOMICALDIRECTION attribute) (bkbit.models.cell_taxonomy.ANATOMICALDIRECTION attribute) Leishmaniasis (bkbit.models.donor.CauseOfDeath attribute) Leprosy (bkbit.models.donor.CauseOfDeath attribute) Leukaemia (bkbit.models.donor.CauseOfDeath attribute) Levamisole (bkbit.models.donor.DrugsFound attribute) Levetiracetam (bkbit.models.donor.DrugsFound attribute) lez (bkbit.models.donor.Language attribute) LI (bkbit.models.donor.BirthCountry attribute) Library (class in bkbit.models.library_generation) library_quantity_ng (bkbit.models.library_generation.Library attribute) library_result (bkbit.models.library_generation.Library attribute) LibraryAliquot (class in bkbit.models.library_generation) LibraryConstruction (class in bkbit.models.library_generation) LibraryPool (class in bkbit.models.library_generation) LibraryPooling (class in bkbit.models.library_generation) LibraryPrepPassFail (class in bkbit.models.library_generation) LibraryR1R2Index (class in bkbit.models.library_generation) LibraryTechnique (class in bkbit.models.library_generation) license (bkbit.models.anatomical_structure.Dataset attribute) (bkbit.models.anatomical_structure.InformationContentEntity attribute) (bkbit.models.cell_taxonomy.Dataset attribute) (bkbit.models.cell_taxonomy.InformationContentEntity attribute) (bkbit.models.cell_taxonomy.RelativeFrequencyAnalysisResult attribute) (bkbit.models.cell_taxonomy.StudyResult attribute) (bkbit.models.donor.Dataset attribute) (bkbit.models.donor.InformationContentEntity attribute) (bkbit.models.donor.RelativeFrequencyAnalysisResult attribute) (bkbit.models.donor.StudyResult attribute) (bkbit.models.genome_annotation.Dataset attribute) (bkbit.models.genome_annotation.InformationContentEntity attribute) (bkbit.models.genome_annotation.RelativeFrequencyAnalysisResult attribute) (bkbit.models.genome_annotation.StudyResult attribute) (bkbit.models.library_generation.Dataset attribute) (bkbit.models.library_generation.DigitalAsset attribute) (bkbit.models.library_generation.InformationContentEntity attribute) (bkbit.models.library_generation.RelativeFrequencyAnalysisResult attribute) (bkbit.models.library_generation.StudyResult attribute) Lidocaine (bkbit.models.donor.DrugsFound attribute) lim (bkbit.models.donor.Language attribute) lin (bkbit.models.donor.Language attribute) linkml_meta (bkbit.models.anatomical_structure.Activity attribute) (bkbit.models.anatomical_structure.ActivityAndBehavior attribute) (bkbit.models.anatomical_structure.AnatomicalAnnotationSet attribute) (bkbit.models.anatomical_structure.AnatomicalSpace attribute) (bkbit.models.anatomical_structure.Annotation attribute) (bkbit.models.anatomical_structure.Attribute attribute) (bkbit.models.anatomical_structure.BiologicalEntity attribute) (bkbit.models.anatomical_structure.Checksum attribute) (bkbit.models.anatomical_structure.ChemicalEntityOrGeneOrGeneProduct attribute) (bkbit.models.anatomical_structure.Dataset attribute) (bkbit.models.anatomical_structure.Entity attribute) (bkbit.models.anatomical_structure.Gene attribute) (bkbit.models.anatomical_structure.GeneOrGeneProduct attribute) (bkbit.models.anatomical_structure.Genome attribute) (bkbit.models.anatomical_structure.GenomicEntity attribute) (bkbit.models.anatomical_structure.ImageDataset attribute) (bkbit.models.anatomical_structure.InformationContentEntity attribute) (bkbit.models.anatomical_structure.MacromolecularMachineMixin attribute) (bkbit.models.anatomical_structure.MaterialSample attribute) (bkbit.models.anatomical_structure.NamedThing attribute) (bkbit.models.anatomical_structure.Occurrent attribute) (bkbit.models.anatomical_structure.OntologyClass attribute) (bkbit.models.anatomical_structure.OrganismTaxon attribute) (bkbit.models.anatomical_structure.ParcellationAnnotation attribute) (bkbit.models.anatomical_structure.ParcellationAnnotationTermMap attribute) (bkbit.models.anatomical_structure.ParcellationAtlas attribute) (bkbit.models.anatomical_structure.ParcellationColorAssignment attribute) (bkbit.models.anatomical_structure.ParcellationColorScheme attribute) (bkbit.models.anatomical_structure.ParcellationTerm attribute) (bkbit.models.anatomical_structure.ParcellationTerminology attribute) (bkbit.models.anatomical_structure.ParcellationTermSet attribute) (bkbit.models.anatomical_structure.PhysicalEntity attribute) (bkbit.models.anatomical_structure.PhysicalEssence attribute) (bkbit.models.anatomical_structure.PhysicalEssenceOrOccurrent attribute) (bkbit.models.anatomical_structure.Procedure attribute) (bkbit.models.anatomical_structure.QuantityValue attribute) (bkbit.models.anatomical_structure.SubjectOfInvestigation attribute) (bkbit.models.anatomical_structure.TaxonomicRank attribute) (bkbit.models.anatomical_structure.ThingWithTaxon attribute) (bkbit.models.anatomical_structure.VersionedNamedThing attribute) (bkbit.models.cell_taxonomy.Abbreviation attribute) (bkbit.models.cell_taxonomy.Activity attribute) (bkbit.models.cell_taxonomy.ActivityAndBehavior attribute) (bkbit.models.cell_taxonomy.AnatomicalAnnotationSet attribute) (bkbit.models.cell_taxonomy.AnatomicalSpace attribute) (bkbit.models.cell_taxonomy.Annotation attribute) (bkbit.models.cell_taxonomy.AnnotationCollection attribute) (bkbit.models.cell_taxonomy.Attribute attribute) (bkbit.models.cell_taxonomy.BiologicalEntity attribute) (bkbit.models.cell_taxonomy.Cell attribute) (bkbit.models.cell_taxonomy.CellTypeSet attribute) (bkbit.models.cell_taxonomy.CellTypeTaxon attribute) (bkbit.models.cell_taxonomy.CellTypeTaxonomy attribute) (bkbit.models.cell_taxonomy.Checksum attribute) (bkbit.models.cell_taxonomy.ChemicalEntityOrGeneOrGeneProduct attribute) (bkbit.models.cell_taxonomy.Cluster attribute) (bkbit.models.cell_taxonomy.ClusterSet attribute) (bkbit.models.cell_taxonomy.ColorPalette attribute) (bkbit.models.cell_taxonomy.Dataset attribute) (bkbit.models.cell_taxonomy.DisplayColor attribute) (bkbit.models.cell_taxonomy.Embedding attribute) (bkbit.models.cell_taxonomy.Entity attribute) (bkbit.models.cell_taxonomy.ExpressionMatrix attribute) (bkbit.models.cell_taxonomy.Gene attribute) (bkbit.models.cell_taxonomy.GeneAnnotation attribute) (bkbit.models.cell_taxonomy.GeneOrGeneProduct attribute) (bkbit.models.cell_taxonomy.Genome attribute) (bkbit.models.cell_taxonomy.GenomeAnnotation attribute) (bkbit.models.cell_taxonomy.GenomeAssembly attribute) (bkbit.models.cell_taxonomy.GenomicEntity attribute) (bkbit.models.cell_taxonomy.ImageDataset attribute) (bkbit.models.cell_taxonomy.InformationContentEntity attribute) (bkbit.models.cell_taxonomy.MacromolecularMachineMixin attribute) (bkbit.models.cell_taxonomy.MaterialSample attribute) (bkbit.models.cell_taxonomy.NamedThing attribute) (bkbit.models.cell_taxonomy.Occurrent attribute) (bkbit.models.cell_taxonomy.OntologyClass attribute) (bkbit.models.cell_taxonomy.OntologyMappable attribute) (bkbit.models.cell_taxonomy.OrganismTaxon attribute) (bkbit.models.cell_taxonomy.ParcellationAnnotation attribute) (bkbit.models.cell_taxonomy.ParcellationAnnotationTermMap attribute) (bkbit.models.cell_taxonomy.ParcellationAtlas attribute) (bkbit.models.cell_taxonomy.ParcellationColorAssignment attribute) (bkbit.models.cell_taxonomy.ParcellationColorScheme attribute) (bkbit.models.cell_taxonomy.ParcellationTerm attribute) (bkbit.models.cell_taxonomy.ParcellationTerminology attribute) (bkbit.models.cell_taxonomy.ParcellationTermSet attribute) (bkbit.models.cell_taxonomy.PhysicalEntity attribute) (bkbit.models.cell_taxonomy.PhysicalEssence attribute) (bkbit.models.cell_taxonomy.PhysicalEssenceOrOccurrent attribute) (bkbit.models.cell_taxonomy.Procedure attribute) (bkbit.models.cell_taxonomy.ProvActivity attribute) (bkbit.models.cell_taxonomy.ProvEntity attribute) (bkbit.models.cell_taxonomy.QuantityValue attribute) (bkbit.models.cell_taxonomy.RelativeFrequencyAnalysisResult attribute) (bkbit.models.cell_taxonomy.StudyResult attribute) (bkbit.models.cell_taxonomy.SubjectOfInvestigation attribute) (bkbit.models.cell_taxonomy.TaxonomicRank attribute) (bkbit.models.cell_taxonomy.ThingWithTaxon attribute) (bkbit.models.cell_taxonomy.VersionedNamedThing attribute) (bkbit.models.donor.Activity attribute) (bkbit.models.donor.ActivityAndBehavior attribute) (bkbit.models.donor.Annotation attribute) (bkbit.models.donor.Attribute attribute) (bkbit.models.donor.BiologicalEntity attribute) (bkbit.models.donor.ChemicalEntityOrGeneOrGeneProduct attribute) (bkbit.models.donor.Dataset attribute) (bkbit.models.donor.Donor attribute) (bkbit.models.donor.Entity attribute) (bkbit.models.donor.Gene attribute) (bkbit.models.donor.GeneOrGeneProduct attribute) (bkbit.models.donor.Genome attribute) (bkbit.models.donor.GenomicEntity attribute) (bkbit.models.donor.InformationContentEntity attribute) (bkbit.models.donor.MacromolecularMachineMixin attribute) (bkbit.models.donor.MaterialSample attribute) (bkbit.models.donor.NamedThing attribute) (bkbit.models.donor.Occurrent attribute) (bkbit.models.donor.OntologyClass attribute) (bkbit.models.donor.OrganismTaxon attribute) (bkbit.models.donor.PhysicalEntity attribute) (bkbit.models.donor.PhysicalEssence attribute) (bkbit.models.donor.PhysicalEssenceOrOccurrent attribute) (bkbit.models.donor.Procedure attribute) (bkbit.models.donor.ProvActivity attribute) (bkbit.models.donor.ProvEntity attribute) (bkbit.models.donor.QuantityValue attribute) (bkbit.models.donor.RelativeFrequencyAnalysisResult attribute) (bkbit.models.donor.StudyResult attribute) (bkbit.models.donor.SubjectOfInvestigation attribute) (bkbit.models.donor.TaxonomicRank attribute) (bkbit.models.donor.ThingWithTaxon attribute) (bkbit.models.genome_annotation.Activity attribute) (bkbit.models.genome_annotation.ActivityAndBehavior attribute) (bkbit.models.genome_annotation.Annotation attribute) (bkbit.models.genome_annotation.AnnotationCollection attribute) (bkbit.models.genome_annotation.Attribute attribute) (bkbit.models.genome_annotation.BiologicalEntity attribute) (bkbit.models.genome_annotation.Checksum attribute) (bkbit.models.genome_annotation.ChemicalEntityOrGeneOrGeneProduct attribute) (bkbit.models.genome_annotation.Dataset attribute) (bkbit.models.genome_annotation.Entity attribute) (bkbit.models.genome_annotation.Gene attribute) (bkbit.models.genome_annotation.GeneAnnotation attribute) (bkbit.models.genome_annotation.GeneOrGeneProduct attribute) (bkbit.models.genome_annotation.Genome attribute) (bkbit.models.genome_annotation.GenomeAnnotation attribute) (bkbit.models.genome_annotation.GenomeAssembly attribute) (bkbit.models.genome_annotation.GenomicEntity attribute) (bkbit.models.genome_annotation.InformationContentEntity attribute) (bkbit.models.genome_annotation.MacromolecularMachineMixin attribute) (bkbit.models.genome_annotation.MaterialSample attribute) (bkbit.models.genome_annotation.NamedThing attribute) (bkbit.models.genome_annotation.Occurrent attribute) (bkbit.models.genome_annotation.OntologyClass attribute) (bkbit.models.genome_annotation.OrganismTaxon attribute) (bkbit.models.genome_annotation.PhysicalEntity attribute) (bkbit.models.genome_annotation.PhysicalEssence attribute) (bkbit.models.genome_annotation.PhysicalEssenceOrOccurrent attribute) (bkbit.models.genome_annotation.Procedure attribute) (bkbit.models.genome_annotation.QuantityValue attribute) (bkbit.models.genome_annotation.RelativeFrequencyAnalysisResult attribute) (bkbit.models.genome_annotation.StudyResult attribute) (bkbit.models.genome_annotation.SubjectOfInvestigation attribute) (bkbit.models.genome_annotation.TaxonomicRank attribute) (bkbit.models.genome_annotation.ThingWithTaxon attribute) (bkbit.models.genome_annotation.VersionedNamedThing attribute) (bkbit.models.library_generation.Activity attribute) (bkbit.models.library_generation.ActivityAndBehavior attribute) (bkbit.models.library_generation.AmplifiedCdna attribute) (bkbit.models.library_generation.Annotation attribute) (bkbit.models.library_generation.Attribute attribute) (bkbit.models.library_generation.BarcodedCellSample attribute) (bkbit.models.library_generation.BiologicalEntity attribute) (bkbit.models.library_generation.BrainSlab attribute) (bkbit.models.library_generation.CdnaAmplification attribute) (bkbit.models.library_generation.CellBarcoding attribute) (bkbit.models.library_generation.CellDissociation attribute) (bkbit.models.library_generation.CellEnrichment attribute) (bkbit.models.library_generation.Checksum attribute) (bkbit.models.library_generation.ChemicalEntityOrGeneOrGeneProduct attribute) (bkbit.models.library_generation.Dataset attribute) (bkbit.models.library_generation.DigitalAsset attribute) (bkbit.models.library_generation.DissectionRoiDelineation attribute) (bkbit.models.library_generation.DissectionRoiPolygon attribute) (bkbit.models.library_generation.DissociatedCellSample attribute) (bkbit.models.library_generation.Donor attribute) (bkbit.models.library_generation.EnrichedCellSample attribute) (bkbit.models.library_generation.EnrichedCellSampleSplitting attribute) (bkbit.models.library_generation.Entity attribute) (bkbit.models.library_generation.Gene attribute) (bkbit.models.library_generation.GeneOrGeneProduct attribute) (bkbit.models.library_generation.Genome attribute) (bkbit.models.library_generation.GenomicEntity attribute) (bkbit.models.library_generation.InformationContentEntity attribute) (bkbit.models.library_generation.Library attribute) (bkbit.models.library_generation.LibraryAliquot attribute) (bkbit.models.library_generation.LibraryConstruction attribute) (bkbit.models.library_generation.LibraryPool attribute) (bkbit.models.library_generation.LibraryPooling attribute) (bkbit.models.library_generation.MacromolecularMachineMixin attribute) (bkbit.models.library_generation.MaterialSample attribute) (bkbit.models.library_generation.NamedThing attribute) (bkbit.models.library_generation.Occurrent attribute) (bkbit.models.library_generation.OntologyClass attribute) (bkbit.models.library_generation.OrganismTaxon attribute) (bkbit.models.library_generation.PhysicalEntity attribute) (bkbit.models.library_generation.PhysicalEssence attribute) (bkbit.models.library_generation.PhysicalEssenceOrOccurrent attribute) (bkbit.models.library_generation.Procedure attribute) (bkbit.models.library_generation.ProvActivity attribute) (bkbit.models.library_generation.ProvEntity attribute) (bkbit.models.library_generation.QuantityValue attribute) (bkbit.models.library_generation.RelativeFrequencyAnalysisResult attribute) (bkbit.models.library_generation.StudyResult attribute) (bkbit.models.library_generation.SubjectOfInvestigation attribute) (bkbit.models.library_generation.TaxonomicRank attribute) (bkbit.models.library_generation.ThingWithTaxon attribute) (bkbit.models.library_generation.TissueDissection attribute) (bkbit.models.library_generation.TissueSample attribute) (bkbit.models.library_generation.VersionedNamedThing attribute)

LinkMLMeta (class in bkbit.models.anatomical_structure) (class in bkbit.models.cell_taxonomy) (class in bkbit.models.donor) (class in bkbit.models.genome_annotation) (class in bkbit.models.library_generation) lit (bkbit.models.donor.Language attribute) literature_name_long (bkbit.models.cell_taxonomy.CellTypeTaxon attribute) literature_name_short (bkbit.models.cell_taxonomy.CellTypeTaxon attribute) literature_support (bkbit.models.cell_taxonomy.CellTypeTaxon attribute) liver (bkbit.models.donor.Tissue attribute) Liver_cancer (bkbit.models.donor.CauseOfDeath attribute) LK (bkbit.models.donor.BirthCountry attribute) load_abbreviations() (in module bkbit.data_translators.ait_taxonomy_translator) load_gene_annotation() (in module bkbit.data_translators.ait_taxonomy_translator) load_id (bkbit.models.cell_taxonomy.Cell attribute) load_json() (in module bkbit.utils.load_json) load_locations() (in module bkbit.data_translators.ait_taxonomy_translator) local_tube_id (bkbit.models.library_generation.LibraryPool attribute) log_level (bkbit.data_translators.genome_annotation_translator.Gff3 attribute) LOG_LEVELS (in module bkbit.utils.setup_logger) log_to_file (bkbit.data_translators.genome_annotation_translator.Gff3 attribute) lol (bkbit.models.donor.Language attribute) long_bone (bkbit.models.donor.Tissue attribute) lookup_common_name() (in module bkbit.utils.ncbi_taxonomy_cache) lookup_scientific_name() (in module bkbit.utils.ncbi_taxonomy_cache) lookup_taxid() (in module bkbit.utils.ncbi_taxonomy_cache) Loperamide (bkbit.models.donor.DrugsFound attribute) Loratadine (bkbit.models.donor.DrugsFound attribute) Lorazepam (bkbit.models.donor.DrugsFound attribute) Low_birth_weight (bkbit.models.donor.CauseOfDeath attribute) Low_QC (bkbit.models.library_generation.AmplifiedCdnaRnaAmplificationPassFail attribute) (bkbit.models.library_generation.LibraryPrepPassFail attribute) Lower_respiratory_infections (bkbit.models.donor.CauseOfDeath attribute) Loxapine (bkbit.models.donor.DrugsFound attribute) loz (bkbit.models.donor.Language attribute) LR (bkbit.models.donor.BirthCountry attribute) LS (bkbit.models.donor.BirthCountry attribute) LSD (bkbit.models.donor.DrugsFound attribute) LT (bkbit.models.donor.BirthCountry attribute) ltz (bkbit.models.donor.Language attribute) LU (bkbit.models.donor.BirthCountry attribute) lua (bkbit.models.donor.Language attribute) lub (bkbit.models.donor.Language attribute) lug (bkbit.models.donor.Language attribute) lui (bkbit.models.donor.Language attribute) lumbar_spinal_cord (bkbit.models.donor.Tissue attribute) lun (bkbit.models.donor.Language attribute) lung (bkbit.models.donor.Tissue attribute) luo (bkbit.models.donor.Language attribute) lus (bkbit.models.donor.Language attribute) LV (bkbit.models.donor.BirthCountry attribute) LY (bkbit.models.donor.BirthCountry attribute) lymph_node (bkbit.models.donor.Tissue attribute) Lymphatic_filariasis (bkbit.models.donor.CauseOfDeath attribute) Lymphomas_multiple_myeloma (bkbit.models.donor.CauseOfDeath attribute)

M

MA (bkbit.models.donor.BirthCountry attribute) mac_LEFT_PARENTHESISBRIGHT_PARENTHESIS (bkbit.models.donor.Language attribute) MacromolecularMachineMixin (class in bkbit.models.anatomical_structure) (class in bkbit.models.cell_taxonomy) (class in bkbit.models.donor) (class in bkbit.models.genome_annotation) (class in bkbit.models.library_generation) mad (bkbit.models.donor.Language attribute) mag (bkbit.models.donor.Language attribute) mah (bkbit.models.donor.Language attribute) mai (bkbit.models.donor.Language attribute) mak (bkbit.models.donor.Language attribute) mal (bkbit.models.donor.Language attribute) Malaria (bkbit.models.donor.CauseOfDeath attribute) male (bkbit.models.donor.Gender attribute) (bkbit.models.donor.Sex attribute) Malignant_neoplasms (bkbit.models.donor.CauseOfDeath attribute) man (bkbit.models.donor.Language attribute) manner_of_death_undetermined (bkbit.models.donor.MannerOfDeath attribute) MannerOfDeath (class in bkbit.models.donor) mao_LEFT_PARENTHESISBRIGHT_PARENTHESIS (bkbit.models.donor.Language attribute) map (bkbit.models.donor.Language attribute) mapping_relation (bkbit.models.cell_taxonomy.Abbreviation attribute) (bkbit.models.cell_taxonomy.CellTypeTaxon attribute) (bkbit.models.cell_taxonomy.OntologyMappable attribute) mar (bkbit.models.donor.Language attribute) marital_status (bkbit.models.donor.Donor attribute) MaritalStatus (class in bkbit.models.donor) married (bkbit.models.donor.MaritalStatus attribute) Maryland (bkbit.models.donor.Repository attribute) Maryland_Psychiatric (bkbit.models.donor.Repository attribute) mas (bkbit.models.donor.Language attribute) MaterialSample (class in bkbit.models.anatomical_structure) (class in bkbit.models.cell_taxonomy) (class in bkbit.models.donor) (class in bkbit.models.genome_annotation) (class in bkbit.models.library_generation) maternal_aunt (bkbit.models.donor.RelativeType attribute) Maternal_conditions (bkbit.models.donor.CauseOfDeath attribute) maternal_cousin (bkbit.models.donor.RelativeType attribute) maternal_grandfather (bkbit.models.donor.RelativeType attribute) maternal_grandmother (bkbit.models.donor.RelativeType attribute) Maternal_haemorrhage (bkbit.models.donor.CauseOfDeath attribute) maternal_nieceSOLIDUSnephew (bkbit.models.donor.RelativeType attribute) Maternal_sepsis (bkbit.models.donor.CauseOfDeath attribute) maternal_uncle (bkbit.models.donor.RelativeType attribute) matrix_type (bkbit.models.cell_taxonomy.ExpressionMatrix attribute) may_LEFT_PARENTHESISBRIGHT_PARENTHESIS (bkbit.models.donor.Language attribute) MC (bkbit.models.donor.BirthCountry attribute) mCPP (bkbit.models.donor.DrugsFound attribute) MD (bkbit.models.donor.BirthCountry attribute) MD5 (bkbit.models.anatomical_structure.DigestType attribute) (bkbit.models.cell_taxonomy.DigestType attribute) (bkbit.models.genome_annotation.DigestType attribute) (bkbit.models.library_generation.DigestType attribute) MDA (bkbit.models.donor.DrugsFound attribute) MDEA (bkbit.models.donor.DrugsFound attribute) mdf (bkbit.models.donor.Language attribute) MDMA (bkbit.models.donor.DrugsFound attribute) mdr (bkbit.models.donor.Language attribute) ME (bkbit.models.donor.BirthCountry attribute) meaning (bkbit.models.cell_taxonomy.Abbreviation attribute) Measles (bkbit.models.donor.CauseOfDeath attribute) measures (bkbit.models.anatomical_structure.AnatomicalSpace attribute) (bkbit.models.cell_taxonomy.AnatomicalSpace attribute) Meclizine (bkbit.models.donor.DrugsFound attribute) Melanoma_and_other_skin_cancers (bkbit.models.donor.CauseOfDeath attribute) Memantine (bkbit.models.donor.DrugsFound attribute) memory_loss (bkbit.models.donor.ConditionType attribute) men (bkbit.models.donor.Language attribute) Meningitis (bkbit.models.donor.CauseOfDeath attribute) Mental_Retardation (bkbit.models.donor.CauseOfDeath attribute) Meperidine (bkbit.models.donor.DrugsFound attribute) Mepivacaine (bkbit.models.donor.DrugsFound attribute) Meprobamate (bkbit.models.donor.DrugsFound attribute) MERFISH (bkbit.models.library_generation.LibraryTechnique attribute) Mescaline (bkbit.models.donor.DrugsFound attribute) Mesoridazine (bkbit.models.donor.DrugsFound attribute) Mesothelioma (bkbit.models.donor.CauseOfDeath attribute) metastasis (bkbit.models.donor.NeoplasticType attribute) Metaxalone (bkbit.models.donor.DrugsFound attribute) meter (bkbit.models.anatomical_structure.DISTANCEUNIT attribute) (bkbit.models.cell_taxonomy.DISTANCEUNIT attribute) Methadone (bkbit.models.donor.DrugsFound attribute) Methamphetamine (bkbit.models.donor.DrugsFound attribute) Methanol (bkbit.models.donor.DrugsFound attribute) Methaqualone (bkbit.models.donor.DrugsFound attribute) Methocarbamol (bkbit.models.donor.DrugsFound attribute) Methoxetamine (bkbit.models.donor.DrugsFound attribute) MethylC_Seq (bkbit.models.library_generation.LibraryTechnique attribute) Methylphenidate (bkbit.models.donor.DrugsFound attribute) Metoprolol (bkbit.models.donor.DrugsFound attribute) Metronidazole (bkbit.models.donor.DrugsFound attribute) MF (bkbit.models.donor.BirthCountry attribute) MG (bkbit.models.donor.BirthCountry attribute) mga (bkbit.models.donor.Language attribute) MH (bkbit.models.donor.BirthCountry attribute) Miami (bkbit.models.donor.Repository attribute) mic (bkbit.models.donor.Language attribute) micrometer (bkbit.models.anatomical_structure.DISTANCEUNIT attribute) (bkbit.models.cell_taxonomy.DISTANCEUNIT attribute) microscopicCOLON_autolysis (bkbit.models.donor.ArtifactType attribute) Midazolam (bkbit.models.donor.DrugsFound attribute) middle_ear_bone (bkbit.models.donor.Tissue attribute) Migraine (bkbit.models.donor.CauseOfDeath attribute) migraines (bkbit.models.donor.ConditionType attribute) millimeter (bkbit.models.anatomical_structure.DISTANCEUNIT attribute) (bkbit.models.cell_taxonomy.DISTANCEUNIT attribute) Milnacipran (bkbit.models.donor.DrugsFound attribute) min (bkbit.models.donor.Language attribute) Mirtazapine (bkbit.models.donor.DrugsFound attribute) mis (bkbit.models.donor.Language attribute) Mitragynine (bkbit.models.donor.DrugsFound attribute) MK (bkbit.models.donor.BirthCountry attribute) mkd_LEFT_PARENTHESISTRIGHT_PARENTHESIS (bkbit.models.donor.Language attribute) mkh (bkbit.models.donor.Language attribute) ML (bkbit.models.donor.BirthCountry attribute) mlg (bkbit.models.donor.Language attribute) mlt (bkbit.models.donor.Language attribute) MM (bkbit.models.donor.BirthCountry attribute) MN (bkbit.models.donor.BirthCountry attribute) mnc (bkbit.models.donor.Language attribute) mni (bkbit.models.donor.Language attribute) mno (bkbit.models.donor.Language attribute) MO (bkbit.models.donor.BirthCountry attribute) mode (bkbit.models.cell_taxonomy.CellTypeTaxonomy attribute) model_config (bkbit.models.anatomical_structure.Activity attribute) (bkbit.models.anatomical_structure.ActivityAndBehavior attribute) (bkbit.models.anatomical_structure.AnatomicalAnnotationSet attribute) (bkbit.models.anatomical_structure.AnatomicalSpace attribute) (bkbit.models.anatomical_structure.Annotation attribute) (bkbit.models.anatomical_structure.Attribute attribute) (bkbit.models.anatomical_structure.BiologicalEntity attribute) (bkbit.models.anatomical_structure.Checksum attribute) (bkbit.models.anatomical_structure.ChemicalEntityOrGeneOrGeneProduct attribute) (bkbit.models.anatomical_structure.ConfiguredBaseModel attribute) (bkbit.models.anatomical_structure.Dataset attribute) (bkbit.models.anatomical_structure.Entity attribute) (bkbit.models.anatomical_structure.Gene attribute) (bkbit.models.anatomical_structure.GeneOrGeneProduct attribute) (bkbit.models.anatomical_structure.Genome attribute) (bkbit.models.anatomical_structure.GenomicEntity attribute) (bkbit.models.anatomical_structure.ImageDataset attribute) (bkbit.models.anatomical_structure.InformationContentEntity attribute) (bkbit.models.anatomical_structure.LinkMLMeta attribute) (bkbit.models.anatomical_structure.MacromolecularMachineMixin attribute) (bkbit.models.anatomical_structure.MaterialSample attribute) (bkbit.models.anatomical_structure.NamedThing attribute) (bkbit.models.anatomical_structure.Occurrent attribute) (bkbit.models.anatomical_structure.OntologyClass attribute) (bkbit.models.anatomical_structure.OrganismTaxon attribute) (bkbit.models.anatomical_structure.ParcellationAnnotation attribute) (bkbit.models.anatomical_structure.ParcellationAnnotationTermMap attribute) (bkbit.models.anatomical_structure.ParcellationAtlas attribute) (bkbit.models.anatomical_structure.ParcellationColorAssignment attribute) (bkbit.models.anatomical_structure.ParcellationColorScheme attribute) (bkbit.models.anatomical_structure.ParcellationTerm attribute) (bkbit.models.anatomical_structure.ParcellationTerminology attribute) (bkbit.models.anatomical_structure.ParcellationTermSet attribute) (bkbit.models.anatomical_structure.PhysicalEntity attribute) (bkbit.models.anatomical_structure.PhysicalEssence attribute) (bkbit.models.anatomical_structure.PhysicalEssenceOrOccurrent attribute) (bkbit.models.anatomical_structure.Procedure attribute) (bkbit.models.anatomical_structure.QuantityValue attribute) (bkbit.models.anatomical_structure.SubjectOfInvestigation attribute) (bkbit.models.anatomical_structure.TaxonomicRank attribute) (bkbit.models.anatomical_structure.ThingWithTaxon attribute) (bkbit.models.anatomical_structure.VersionedNamedThing attribute) (bkbit.models.cell_taxonomy.Abbreviation attribute) (bkbit.models.cell_taxonomy.Activity attribute) (bkbit.models.cell_taxonomy.ActivityAndBehavior attribute) (bkbit.models.cell_taxonomy.AnatomicalAnnotationSet attribute) (bkbit.models.cell_taxonomy.AnatomicalSpace attribute) (bkbit.models.cell_taxonomy.Annotation attribute) (bkbit.models.cell_taxonomy.AnnotationCollection attribute) (bkbit.models.cell_taxonomy.Attribute attribute) (bkbit.models.cell_taxonomy.BiologicalEntity attribute) (bkbit.models.cell_taxonomy.Cell attribute) (bkbit.models.cell_taxonomy.CellTypeSet attribute) (bkbit.models.cell_taxonomy.CellTypeTaxon attribute) (bkbit.models.cell_taxonomy.CellTypeTaxonomy attribute) (bkbit.models.cell_taxonomy.Checksum attribute) (bkbit.models.cell_taxonomy.ChemicalEntityOrGeneOrGeneProduct attribute) (bkbit.models.cell_taxonomy.Cluster attribute) (bkbit.models.cell_taxonomy.ClusterSet attribute) (bkbit.models.cell_taxonomy.ColorPalette attribute) (bkbit.models.cell_taxonomy.ConfiguredBaseModel attribute) (bkbit.models.cell_taxonomy.Dataset attribute) (bkbit.models.cell_taxonomy.DisplayColor attribute) (bkbit.models.cell_taxonomy.Embedding attribute) (bkbit.models.cell_taxonomy.Entity attribute) (bkbit.models.cell_taxonomy.ExpressionMatrix attribute) (bkbit.models.cell_taxonomy.Gene attribute) (bkbit.models.cell_taxonomy.GeneAnnotation attribute) (bkbit.models.cell_taxonomy.GeneOrGeneProduct attribute) (bkbit.models.cell_taxonomy.Genome attribute) (bkbit.models.cell_taxonomy.GenomeAnnotation attribute) (bkbit.models.cell_taxonomy.GenomeAssembly attribute) (bkbit.models.cell_taxonomy.GenomicEntity attribute) (bkbit.models.cell_taxonomy.ImageDataset attribute) (bkbit.models.cell_taxonomy.InformationContentEntity attribute) (bkbit.models.cell_taxonomy.LinkMLMeta attribute) (bkbit.models.cell_taxonomy.MacromolecularMachineMixin attribute) (bkbit.models.cell_taxonomy.MaterialSample attribute) (bkbit.models.cell_taxonomy.NamedThing attribute) (bkbit.models.cell_taxonomy.Occurrent attribute) (bkbit.models.cell_taxonomy.OntologyClass attribute) (bkbit.models.cell_taxonomy.OntologyMappable attribute) (bkbit.models.cell_taxonomy.OrganismTaxon attribute) (bkbit.models.cell_taxonomy.ParcellationAnnotation attribute) (bkbit.models.cell_taxonomy.ParcellationAnnotationTermMap attribute) (bkbit.models.cell_taxonomy.ParcellationAtlas attribute) (bkbit.models.cell_taxonomy.ParcellationColorAssignment attribute) (bkbit.models.cell_taxonomy.ParcellationColorScheme attribute) (bkbit.models.cell_taxonomy.ParcellationTerm attribute) (bkbit.models.cell_taxonomy.ParcellationTerminology attribute) (bkbit.models.cell_taxonomy.ParcellationTermSet attribute) (bkbit.models.cell_taxonomy.PhysicalEntity attribute) (bkbit.models.cell_taxonomy.PhysicalEssence attribute) (bkbit.models.cell_taxonomy.PhysicalEssenceOrOccurrent attribute) (bkbit.models.cell_taxonomy.Procedure attribute) (bkbit.models.cell_taxonomy.ProvActivity attribute) (bkbit.models.cell_taxonomy.ProvEntity attribute) (bkbit.models.cell_taxonomy.QuantityValue attribute) (bkbit.models.cell_taxonomy.RelativeFrequencyAnalysisResult attribute) (bkbit.models.cell_taxonomy.StudyResult attribute) (bkbit.models.cell_taxonomy.SubjectOfInvestigation attribute) (bkbit.models.cell_taxonomy.TaxonomicRank attribute) (bkbit.models.cell_taxonomy.ThingWithTaxon attribute) (bkbit.models.cell_taxonomy.VersionedNamedThing attribute) (bkbit.models.donor.Activity attribute) (bkbit.models.donor.ActivityAndBehavior attribute) (bkbit.models.donor.Annotation attribute) (bkbit.models.donor.Attribute attribute) (bkbit.models.donor.BiologicalEntity attribute) (bkbit.models.donor.ChemicalEntityOrGeneOrGeneProduct attribute) (bkbit.models.donor.ConfiguredBaseModel attribute) (bkbit.models.donor.Dataset attribute) (bkbit.models.donor.Donor attribute) (bkbit.models.donor.Entity attribute) (bkbit.models.donor.Gene attribute) (bkbit.models.donor.GeneOrGeneProduct attribute) (bkbit.models.donor.Genome attribute) (bkbit.models.donor.GenomicEntity attribute) (bkbit.models.donor.InformationContentEntity attribute) (bkbit.models.donor.LinkMLMeta attribute) (bkbit.models.donor.MacromolecularMachineMixin attribute) (bkbit.models.donor.MaterialSample attribute) (bkbit.models.donor.NamedThing attribute) (bkbit.models.donor.Occurrent attribute) (bkbit.models.donor.OntologyClass attribute) (bkbit.models.donor.OrganismTaxon attribute) (bkbit.models.donor.PhysicalEntity attribute) (bkbit.models.donor.PhysicalEssence attribute) (bkbit.models.donor.PhysicalEssenceOrOccurrent attribute) (bkbit.models.donor.Procedure attribute) (bkbit.models.donor.ProvActivity attribute) (bkbit.models.donor.ProvEntity attribute) (bkbit.models.donor.QuantityValue attribute) (bkbit.models.donor.RelativeFrequencyAnalysisResult attribute) (bkbit.models.donor.StudyResult attribute) (bkbit.models.donor.SubjectOfInvestigation attribute) (bkbit.models.donor.TaxonomicRank attribute) (bkbit.models.donor.ThingWithTaxon attribute) (bkbit.models.genome_annotation.Activity attribute) (bkbit.models.genome_annotation.ActivityAndBehavior attribute) (bkbit.models.genome_annotation.Annotation attribute) (bkbit.models.genome_annotation.AnnotationCollection attribute) (bkbit.models.genome_annotation.Attribute attribute) (bkbit.models.genome_annotation.BiologicalEntity attribute) (bkbit.models.genome_annotation.Checksum attribute) (bkbit.models.genome_annotation.ChemicalEntityOrGeneOrGeneProduct attribute) (bkbit.models.genome_annotation.ConfiguredBaseModel attribute) (bkbit.models.genome_annotation.Dataset attribute) (bkbit.models.genome_annotation.Entity attribute) (bkbit.models.genome_annotation.Gene attribute) (bkbit.models.genome_annotation.GeneAnnotation attribute) (bkbit.models.genome_annotation.GeneOrGeneProduct attribute) (bkbit.models.genome_annotation.Genome attribute) (bkbit.models.genome_annotation.GenomeAnnotation attribute) (bkbit.models.genome_annotation.GenomeAssembly attribute) (bkbit.models.genome_annotation.GenomicEntity attribute) (bkbit.models.genome_annotation.InformationContentEntity attribute) (bkbit.models.genome_annotation.LinkMLMeta attribute) (bkbit.models.genome_annotation.MacromolecularMachineMixin attribute) (bkbit.models.genome_annotation.MaterialSample attribute) (bkbit.models.genome_annotation.NamedThing attribute) (bkbit.models.genome_annotation.Occurrent attribute) (bkbit.models.genome_annotation.OntologyClass attribute) (bkbit.models.genome_annotation.OrganismTaxon attribute) (bkbit.models.genome_annotation.PhysicalEntity attribute) (bkbit.models.genome_annotation.PhysicalEssence attribute) (bkbit.models.genome_annotation.PhysicalEssenceOrOccurrent attribute) (bkbit.models.genome_annotation.Procedure attribute) (bkbit.models.genome_annotation.QuantityValue attribute) (bkbit.models.genome_annotation.RelativeFrequencyAnalysisResult attribute) (bkbit.models.genome_annotation.StudyResult attribute) (bkbit.models.genome_annotation.SubjectOfInvestigation attribute) (bkbit.models.genome_annotation.TaxonomicRank attribute) (bkbit.models.genome_annotation.ThingWithTaxon attribute) (bkbit.models.genome_annotation.VersionedNamedThing attribute) (bkbit.models.library_generation.Activity attribute) (bkbit.models.library_generation.ActivityAndBehavior attribute) (bkbit.models.library_generation.AmplifiedCdna attribute) (bkbit.models.library_generation.Annotation attribute) (bkbit.models.library_generation.Attribute attribute) (bkbit.models.library_generation.BarcodedCellSample attribute) (bkbit.models.library_generation.BiologicalEntity attribute) (bkbit.models.library_generation.BrainSlab attribute) (bkbit.models.library_generation.CdnaAmplification attribute) (bkbit.models.library_generation.CellBarcoding attribute) (bkbit.models.library_generation.CellDissociation attribute) (bkbit.models.library_generation.CellEnrichment attribute) (bkbit.models.library_generation.Checksum attribute) (bkbit.models.library_generation.ChemicalEntityOrGeneOrGeneProduct attribute) (bkbit.models.library_generation.ConfiguredBaseModel attribute) (bkbit.models.library_generation.Dataset attribute) (bkbit.models.library_generation.DigitalAsset attribute) (bkbit.models.library_generation.DissectionRoiDelineation attribute) (bkbit.models.library_generation.DissectionRoiPolygon attribute) (bkbit.models.library_generation.DissociatedCellSample attribute) (bkbit.models.library_generation.Donor attribute) (bkbit.models.library_generation.EnrichedCellSample attribute) (bkbit.models.library_generation.EnrichedCellSampleSplitting attribute) (bkbit.models.library_generation.Entity attribute) (bkbit.models.library_generation.Gene attribute) (bkbit.models.library_generation.GeneOrGeneProduct attribute) (bkbit.models.library_generation.Genome attribute) (bkbit.models.library_generation.GenomicEntity attribute) (bkbit.models.library_generation.InformationContentEntity attribute) (bkbit.models.library_generation.Library attribute) (bkbit.models.library_generation.LibraryAliquot attribute) (bkbit.models.library_generation.LibraryConstruction attribute) (bkbit.models.library_generation.LibraryPool attribute) (bkbit.models.library_generation.LibraryPooling attribute) (bkbit.models.library_generation.LinkMLMeta attribute) (bkbit.models.library_generation.MacromolecularMachineMixin attribute) (bkbit.models.library_generation.MaterialSample attribute) (bkbit.models.library_generation.NamedThing attribute) (bkbit.models.library_generation.Occurrent attribute) (bkbit.models.library_generation.OntologyClass attribute) (bkbit.models.library_generation.OrganismTaxon attribute) (bkbit.models.library_generation.PhysicalEntity attribute) (bkbit.models.library_generation.PhysicalEssence attribute) (bkbit.models.library_generation.PhysicalEssenceOrOccurrent attribute) (bkbit.models.library_generation.Procedure attribute) (bkbit.models.library_generation.ProvActivity attribute) (bkbit.models.library_generation.ProvEntity attribute) (bkbit.models.library_generation.QuantityValue attribute) (bkbit.models.library_generation.RelativeFrequencyAnalysisResult attribute) (bkbit.models.library_generation.StudyResult attribute) (bkbit.models.library_generation.SubjectOfInvestigation attribute) (bkbit.models.library_generation.TaxonomicRank attribute) (bkbit.models.library_generation.ThingWithTaxon attribute) (bkbit.models.library_generation.TissueDissection attribute) (bkbit.models.library_generation.TissueSample attribute) (bkbit.models.library_generation.VersionedNamedThing attribute)

module bkbit bkbit.data_translators bkbit.data_translators.ait_taxonomy_translator bkbit.data_translators.anatomical_structure_translator bkbit.data_translators.file_manifest_translator bkbit.data_translators.genome_annotation_translator bkbit.data_translators.library_generation_translator bkbit.data_translators.specimen_metadata_translator bkbit.model_converters bkbit.model_converters.sheets_converter bkbit.model_converters.yaml2sheet_converter bkbit.model_editors bkbit.model_editors.add_dunderMethods_genomeAnnotation bkbit.model_editors.linkml_trimmer bkbit.models bkbit.models.anatomical_structure bkbit.models.cell_taxonomy bkbit.models.donor bkbit.models.genome_annotation bkbit.models.library_generation bkbit.utils bkbit.utils.generate_bkbit_id bkbit.utils.get_ncbi_taxonomy bkbit.utils.load_json bkbit.utils.ncbi_taxonomy_cache bkbit.utils.ncbi_taxonomy_data bkbit.utils.ncbi_taxonomy_data.build_subset bkbit.utils.nimp_api_endpoints bkbit.utils.serialize_to_ttl bkbit.utils.setup_logger moh (bkbit.models.donor.Language attribute) molecular_type (bkbit.models.cell_taxonomy.GeneAnnotation attribute) (bkbit.models.genome_annotation.GeneAnnotation attribute) mon (bkbit.models.donor.Language attribute) Monoethylglycinexylidide_LEFT_PARENTHESISMEGXRIGHT_PARENTHESIS (bkbit.models.donor.DrugsFound attribute) month (bkbit.models.library_generation.AgeAtDeathUnit attribute) More_than_one_race (bkbit.models.donor.Race attribute) Morphine (bkbit.models.donor.DrugsFound attribute) mos (bkbit.models.donor.Language attribute) Mouth_and_oropharynx_cancers (bkbit.models.donor.CauseOfDeath attribute) MP (bkbit.models.donor.BirthCountry attribute) MQ (bkbit.models.donor.BirthCountry attribute) MR (bkbit.models.donor.BirthCountry attribute) mri_LEFT_PARENTHESISTRIGHT_PARENTHESIS (bkbit.models.donor.Language attribute) MS (bkbit.models.donor.BirthCountry attribute) msa_LEFT_PARENTHESISTRIGHT_PARENTHESIS (bkbit.models.donor.Language attribute) MT (bkbit.models.donor.BirthCountry attribute) MtFULL_STOP_Sinai (bkbit.models.donor.Repository attribute) MU (bkbit.models.donor.BirthCountry attribute) mul (bkbit.models.donor.Language attribute) Multiome (bkbit.models.library_generation.BarcodedCellSampleTechnique attribute) Multiple_sclerosis (bkbit.models.donor.CauseOfDeath attribute) multiple_sclerosis (bkbit.models.donor.ConditionType attribute) Multiplex_Droplet_Paired_TagSEMICOLON_DNA (bkbit.models.library_generation.LibraryTechnique attribute) Multiplex_Droplet_Paired_TagSEMICOLON_RNA (bkbit.models.library_generation.LibraryTechnique attribute) multivalued_map() (in module bkbit.data_translators.ait_taxonomy_translator) mun (bkbit.models.donor.Language attribute) mus (bkbit.models.donor.Language attribute) muscle_disease (bkbit.models.donor.ConditionType attribute) Musculoskeletal_diseases (bkbit.models.donor.CauseOfDeath attribute) MV (bkbit.models.donor.BirthCountry attribute) MW (bkbit.models.donor.BirthCountry attribute) mwl (bkbit.models.donor.Language attribute) mwr (bkbit.models.donor.Language attribute) MX (bkbit.models.donor.BirthCountry attribute) MY (bkbit.models.donor.BirthCountry attribute) mya_LEFT_PARENTHESISTRIGHT_PARENTHESIS (bkbit.models.donor.Language attribute) myn (bkbit.models.donor.Language attribute) myv (bkbit.models.donor.Language attribute) MZ (bkbit.models.donor.BirthCountry attribute)

N

N_Acetylprocainamide (bkbit.models.donor.DrugsFound attribute) N_ethyl_Pentylone (bkbit.models.donor.DrugsFound attribute) na (bkbit.models.cell_taxonomy.SuspensionType attribute) nah (bkbit.models.donor.Language attribute) nai (bkbit.models.donor.Language attribute) nail (bkbit.models.donor.Tissue attribute) Nalbuphine (bkbit.models.donor.DrugsFound attribute) Naloxone (bkbit.models.donor.DrugsFound attribute) Naltrexone (bkbit.models.donor.DrugsFound attribute) Naltrexone___Free (bkbit.models.donor.DrugsFound attribute) name (bkbit.models.anatomical_structure.Activity attribute) (bkbit.models.anatomical_structure.AnatomicalAnnotationSet attribute) (bkbit.models.anatomical_structure.AnatomicalSpace attribute) (bkbit.models.anatomical_structure.Attribute attribute) (bkbit.models.anatomical_structure.BiologicalEntity attribute) (bkbit.models.anatomical_structure.Checksum attribute) (bkbit.models.anatomical_structure.Dataset attribute) (bkbit.models.anatomical_structure.Entity attribute) (bkbit.models.anatomical_structure.Gene attribute) (bkbit.models.anatomical_structure.GeneOrGeneProduct attribute) (bkbit.models.anatomical_structure.Genome attribute) (bkbit.models.anatomical_structure.ImageDataset attribute) (bkbit.models.anatomical_structure.InformationContentEntity attribute) (bkbit.models.anatomical_structure.MacromolecularMachineMixin attribute) (bkbit.models.anatomical_structure.MaterialSample attribute) (bkbit.models.anatomical_structure.NamedThing attribute) (bkbit.models.anatomical_structure.OrganismTaxon attribute) (bkbit.models.anatomical_structure.ParcellationAtlas attribute) (bkbit.models.anatomical_structure.ParcellationColorScheme attribute) (bkbit.models.anatomical_structure.ParcellationTerm attribute) (bkbit.models.anatomical_structure.ParcellationTerminology attribute) (bkbit.models.anatomical_structure.ParcellationTermSet attribute) (bkbit.models.anatomical_structure.PhysicalEntity attribute) (bkbit.models.anatomical_structure.Procedure attribute) (bkbit.models.anatomical_structure.VersionedNamedThing attribute) (bkbit.models.cell_taxonomy.Abbreviation attribute) (bkbit.models.cell_taxonomy.Activity attribute) (bkbit.models.cell_taxonomy.AnatomicalAnnotationSet attribute) (bkbit.models.cell_taxonomy.AnatomicalSpace attribute) (bkbit.models.cell_taxonomy.Attribute attribute) (bkbit.models.cell_taxonomy.BiologicalEntity attribute) (bkbit.models.cell_taxonomy.Cell attribute) (bkbit.models.cell_taxonomy.CellTypeSet attribute) (bkbit.models.cell_taxonomy.CellTypeTaxon attribute) (bkbit.models.cell_taxonomy.CellTypeTaxonomy attribute) (bkbit.models.cell_taxonomy.Checksum attribute) (bkbit.models.cell_taxonomy.Cluster attribute) (bkbit.models.cell_taxonomy.ClusterSet attribute) (bkbit.models.cell_taxonomy.ColorPalette attribute) (bkbit.models.cell_taxonomy.Dataset attribute) (bkbit.models.cell_taxonomy.DisplayColor attribute) (bkbit.models.cell_taxonomy.Embedding attribute) (bkbit.models.cell_taxonomy.Entity attribute) (bkbit.models.cell_taxonomy.ExpressionMatrix attribute) (bkbit.models.cell_taxonomy.Gene attribute) (bkbit.models.cell_taxonomy.GeneAnnotation attribute) (bkbit.models.cell_taxonomy.GeneOrGeneProduct attribute) (bkbit.models.cell_taxonomy.Genome attribute) (bkbit.models.cell_taxonomy.GenomeAnnotation attribute) (bkbit.models.cell_taxonomy.GenomeAssembly attribute) (bkbit.models.cell_taxonomy.ImageDataset attribute) (bkbit.models.cell_taxonomy.InformationContentEntity attribute) (bkbit.models.cell_taxonomy.MacromolecularMachineMixin attribute) (bkbit.models.cell_taxonomy.MaterialSample attribute) (bkbit.models.cell_taxonomy.NamedThing attribute) (bkbit.models.cell_taxonomy.OrganismTaxon attribute) (bkbit.models.cell_taxonomy.ParcellationAtlas attribute) (bkbit.models.cell_taxonomy.ParcellationColorScheme attribute) (bkbit.models.cell_taxonomy.ParcellationTerm attribute) (bkbit.models.cell_taxonomy.ParcellationTerminology attribute) (bkbit.models.cell_taxonomy.ParcellationTermSet attribute) (bkbit.models.cell_taxonomy.PhysicalEntity attribute) (bkbit.models.cell_taxonomy.Procedure attribute) (bkbit.models.cell_taxonomy.RelativeFrequencyAnalysisResult attribute) (bkbit.models.cell_taxonomy.StudyResult attribute) (bkbit.models.cell_taxonomy.VersionedNamedThing attribute) (bkbit.models.donor.Activity attribute) (bkbit.models.donor.Attribute attribute) (bkbit.models.donor.BiologicalEntity attribute) (bkbit.models.donor.Dataset attribute) (bkbit.models.donor.Donor attribute) (bkbit.models.donor.Entity attribute) (bkbit.models.donor.Gene attribute) (bkbit.models.donor.GeneOrGeneProduct attribute) (bkbit.models.donor.Genome attribute) (bkbit.models.donor.InformationContentEntity attribute) (bkbit.models.donor.MacromolecularMachineMixin attribute) (bkbit.models.donor.MaterialSample attribute) (bkbit.models.donor.NamedThing attribute) (bkbit.models.donor.OrganismTaxon attribute) (bkbit.models.donor.PhysicalEntity attribute) (bkbit.models.donor.Procedure attribute) (bkbit.models.donor.RelativeFrequencyAnalysisResult attribute) (bkbit.models.donor.StudyResult attribute) (bkbit.models.genome_annotation.Activity attribute) (bkbit.models.genome_annotation.Attribute attribute) (bkbit.models.genome_annotation.BiologicalEntity attribute) (bkbit.models.genome_annotation.Checksum attribute) (bkbit.models.genome_annotation.Dataset attribute) (bkbit.models.genome_annotation.Entity attribute) (bkbit.models.genome_annotation.Gene attribute) (bkbit.models.genome_annotation.GeneAnnotation attribute) (bkbit.models.genome_annotation.GeneOrGeneProduct attribute) (bkbit.models.genome_annotation.Genome attribute) (bkbit.models.genome_annotation.GenomeAnnotation attribute) (bkbit.models.genome_annotation.GenomeAssembly attribute) (bkbit.models.genome_annotation.InformationContentEntity attribute) (bkbit.models.genome_annotation.MacromolecularMachineMixin attribute) (bkbit.models.genome_annotation.MaterialSample attribute) (bkbit.models.genome_annotation.NamedThing attribute) (bkbit.models.genome_annotation.OrganismTaxon attribute) (bkbit.models.genome_annotation.PhysicalEntity attribute) (bkbit.models.genome_annotation.Procedure attribute) (bkbit.models.genome_annotation.RelativeFrequencyAnalysisResult attribute) (bkbit.models.genome_annotation.StudyResult attribute) (bkbit.models.genome_annotation.VersionedNamedThing attribute) (bkbit.models.library_generation.Activity attribute) (bkbit.models.library_generation.AmplifiedCdna attribute) (bkbit.models.library_generation.Attribute attribute) (bkbit.models.library_generation.BarcodedCellSample attribute) (bkbit.models.library_generation.BiologicalEntity attribute) (bkbit.models.library_generation.BrainSlab attribute) (bkbit.models.library_generation.CdnaAmplification attribute) (bkbit.models.library_generation.CellBarcoding attribute) (bkbit.models.library_generation.CellDissociation attribute) (bkbit.models.library_generation.CellEnrichment attribute) (bkbit.models.library_generation.Checksum attribute) (bkbit.models.library_generation.Dataset attribute) (bkbit.models.library_generation.DigitalAsset attribute) (bkbit.models.library_generation.DissectionRoiDelineation attribute) (bkbit.models.library_generation.DissectionRoiPolygon attribute) (bkbit.models.library_generation.DissociatedCellSample attribute) (bkbit.models.library_generation.Donor attribute) (bkbit.models.library_generation.EnrichedCellSample attribute) (bkbit.models.library_generation.EnrichedCellSampleSplitting attribute) (bkbit.models.library_generation.Entity attribute) (bkbit.models.library_generation.Gene attribute) (bkbit.models.library_generation.GeneOrGeneProduct attribute) (bkbit.models.library_generation.Genome attribute) (bkbit.models.library_generation.InformationContentEntity attribute) (bkbit.models.library_generation.Library attribute) (bkbit.models.library_generation.LibraryAliquot attribute) (bkbit.models.library_generation.LibraryConstruction attribute) (bkbit.models.library_generation.LibraryPool attribute) (bkbit.models.library_generation.LibraryPooling attribute) (bkbit.models.library_generation.MacromolecularMachineMixin attribute) (bkbit.models.library_generation.MaterialSample attribute) (bkbit.models.library_generation.NamedThing attribute) (bkbit.models.library_generation.OrganismTaxon attribute) (bkbit.models.library_generation.PhysicalEntity attribute) (bkbit.models.library_generation.Procedure attribute) (bkbit.models.library_generation.RelativeFrequencyAnalysisResult attribute) (bkbit.models.library_generation.StudyResult attribute) (bkbit.models.library_generation.TissueDissection attribute) (bkbit.models.library_generation.TissueSample attribute) (bkbit.models.library_generation.VersionedNamedThing attribute) NamedThing (class in bkbit.models.anatomical_structure) (class in bkbit.models.cell_taxonomy) (class in bkbit.models.donor) (class in bkbit.models.genome_annotation) (class in bkbit.models.library_generation) nap (bkbit.models.donor.Language attribute) Naproxen (bkbit.models.donor.DrugsFound attribute) Naproxen_Breakdown_Product (bkbit.models.donor.DrugsFound attribute) narrow_match (bkbit.models.cell_taxonomy.Abbreviation attribute) (bkbit.models.cell_taxonomy.CellTypeTaxon attribute) (bkbit.models.cell_taxonomy.OntologyMappable attribute)

nasal_swab (bkbit.models.donor.TissueSource attribute) Native_Hawaiian_or_Other_Pacific_Islander (bkbit.models.donor.Race attribute) natural (bkbit.models.donor.MannerOfDeath attribute) Natural_disasters (bkbit.models.donor.CauseOfDeath attribute) nau (bkbit.models.donor.Language attribute) nav (bkbit.models.donor.Language attribute) nbl (bkbit.models.donor.Language attribute) NC (bkbit.models.donor.BirthCountry attribute) NCBI (bkbit.models.cell_taxonomy.AuthorityType attribute) (bkbit.models.genome_annotation.AuthorityType attribute) ncbi_taxon_number() (in module bkbit.data_translators.ait_taxonomy_translator) NCBITaxonCOLON10090 (bkbit.models.library_generation.Species attribute) NCBITaxonCOLON10116 (bkbit.models.library_generation.Species attribute) NCBITaxonCOLON10181 (bkbit.models.library_generation.Species attribute) NCBITaxonCOLON13616 (bkbit.models.library_generation.Species attribute) NCBITaxonCOLON27679 (bkbit.models.library_generation.Species attribute) NCBITaxonCOLON30608 (bkbit.models.library_generation.Species attribute) NCBITaxonCOLON37293 (bkbit.models.library_generation.Species attribute) NCBITaxonCOLON37347 (bkbit.models.library_generation.Species attribute) NCBITaxonCOLON60711 (bkbit.models.library_generation.Species attribute) NCBITaxonCOLON9361 (bkbit.models.library_generation.Species attribute) NCBITaxonCOLON9483 (bkbit.models.library_generation.Species attribute) NCBITaxonCOLON9521 (bkbit.models.library_generation.Species attribute) NCBITaxonCOLON9534 (bkbit.models.library_generation.Species attribute) NCBITaxonCOLON9541 (bkbit.models.library_generation.Species attribute) NCBITaxonCOLON9544 (bkbit.models.library_generation.Species attribute) NCBITaxonCOLON9545 (bkbit.models.library_generation.Species attribute) NCBITaxonCOLON9555 (bkbit.models.library_generation.Species attribute) NCBITaxonCOLON9593 (bkbit.models.library_generation.Species attribute) NCBITaxonCOLON9598 (bkbit.models.library_generation.Species attribute) NCBITaxonCOLON9606 (bkbit.models.library_generation.Species attribute) NCBITaxonCOLON9614 (bkbit.models.library_generation.Species attribute) NCBITaxonCOLON9669 (bkbit.models.library_generation.Species attribute) NCBITaxonCOLON9685 (bkbit.models.library_generation.Species attribute) NCBITaxonCOLON9742 (bkbit.models.library_generation.Species attribute) NCBITaxonCOLON9823 (bkbit.models.library_generation.Species attribute) NCBITaxonCOLON9986 (bkbit.models.library_generation.Species attribute) NCBITaxonCOLON9999 (bkbit.models.library_generation.Species attribute) nde (bkbit.models.donor.Language attribute) ndo (bkbit.models.donor.Language attribute) nds (bkbit.models.donor.Language attribute) NE (bkbit.models.donor.BirthCountry attribute) neighborhood (bkbit.models.cell_taxonomy.CellTypeSetType attribute) neoplastic_type (bkbit.models.donor.Donor attribute) NeoplasticType (class in bkbit.models.donor) nep (bkbit.models.donor.Language attribute) Nephritis_and_nephrosis (bkbit.models.donor.CauseOfDeath attribute) neurodegenerative_type (bkbit.models.donor.Donor attribute) NeurodegenerativeType (class in bkbit.models.donor) neurologic_events_data_available (bkbit.models.donor.Donor attribute) neuropathology_diagnosis_code (bkbit.models.donor.Donor attribute) Neuropsychiatric_conditions (bkbit.models.donor.CauseOfDeath attribute) never_married (bkbit.models.donor.MaritalStatus attribute) new (bkbit.models.donor.Language attribute) NF (bkbit.models.donor.BirthCountry attribute) NG (bkbit.models.donor.BirthCountry attribute) NI (bkbit.models.donor.BirthCountry attribute) nia (bkbit.models.donor.Language attribute) nic (bkbit.models.donor.Language attribute) Nicotine (bkbit.models.donor.DrugsFound attribute) niu (bkbit.models.donor.Language attribute) NL (bkbit.models.donor.BirthCountry attribute) nld_LEFT_PARENTHESISTRIGHT_PARENTHESIS (bkbit.models.donor.Language attribute) nn_diagnoses_data_available (bkbit.models.donor.Donor attribute) nno (bkbit.models.donor.Language attribute) NO (bkbit.models.donor.BirthCountry attribute) nob (bkbit.models.donor.Language attribute) nog (bkbit.models.donor.Language attribute) non (bkbit.models.donor.Language attribute) non_binary (bkbit.models.donor.Gender attribute) non_brain_diagnosis_code (bkbit.models.donor.Donor attribute) non_brain_diagnosis_confidence_level (bkbit.models.donor.Donor attribute) non_brain_specimen_data_available (bkbit.models.donor.Donor attribute) non_brain_tissue_available (bkbit.models.donor.Donor attribute) NON_IDENTIFYING_ATTRIBUTES (in module bkbit.utils.generate_bkbit_id) noncoding (bkbit.models.cell_taxonomy.BioType attribute) (bkbit.models.genome_annotation.BioType attribute) Noncommunicable_diseases (bkbit.models.donor.CauseOfDeath attribute) none (bkbit.models.donor.PerinatalEvent attribute) none_of_these_describe_me (bkbit.models.donor.Sex attribute) nor (bkbit.models.donor.Language attribute) Norbuprenorphine___Free (bkbit.models.donor.DrugsFound attribute) Norclozapine (bkbit.models.donor.DrugsFound attribute) Norcodeine (bkbit.models.donor.DrugsFound attribute) Norcyclobenzaprine (bkbit.models.donor.DrugsFound attribute) Nordiazepam (bkbit.models.donor.DrugsFound attribute) Norfentanyl (bkbit.models.donor.DrugsFound attribute) Norflunitrazepam (bkbit.models.donor.DrugsFound attribute) Norfluoxetine (bkbit.models.donor.DrugsFound attribute) Norhydroxyzine (bkbit.models.donor.DrugsFound attribute) Norketamine (bkbit.models.donor.DrugsFound attribute) normalized (bkbit.models.cell_taxonomy.ExpressionMatrixType attribute) Normeperidine (bkbit.models.donor.DrugsFound attribute) Norpropoxyphene (bkbit.models.donor.DrugsFound attribute) Norpseudoephedrine (bkbit.models.donor.DrugsFound attribute) Norpseudoephedrine_SOLIDUS_Phenylpropanolamine (bkbit.models.donor.DrugsFound attribute) Nortriptyline (bkbit.models.donor.DrugsFound attribute) not_deceased (bkbit.models.donor.MannerOfDeath attribute) Not_evaluated (bkbit.models.library_generation.AmplifiedCdnaRnaAmplificationPassFail attribute) (bkbit.models.library_generation.LibraryPrepPassFail attribute) Not_Hispanic_or_Latino (bkbit.models.donor.Ethnicity attribute) Not_reported (bkbit.models.donor.Ethnicity attribute) not_reported (bkbit.models.donor.Gender attribute) (bkbit.models.donor.SexualOrientation attribute) NP (bkbit.models.donor.BirthCountry attribute) nqo (bkbit.models.donor.Language attribute) NR (bkbit.models.donor.BirthCountry attribute) nso (bkbit.models.donor.Language attribute) NU (bkbit.models.donor.BirthCountry attribute) nub (bkbit.models.donor.Language attribute) Nuclei (bkbit.models.library_generation.DissociatedCellSampleCellPrepType attribute) nucleus (bkbit.models.cell_taxonomy.SuspensionType attribute) number_1 (bkbit.models.library_generation.FastqFileAlignmentStatus attribute) (bkbit.models.library_generation.Sex attribute) number_10_Hydroxycarbazepine (bkbit.models.donor.DrugsFound attribute) number_10x5Pv3 (bkbit.models.library_generation.LibraryTechnique attribute) number_10x_5P_v5FULL_STOP2 (bkbit.models.library_generation.LibraryTechnique attribute) number_10xATAC_V2FULL_STOP0 (bkbit.models.library_generation.LibraryTechnique attribute) number_10XMultiome_Cell_HashingSEMICOLONBarcode (bkbit.models.library_generation.LibraryTechnique attribute) number_10XMultiome_CellHashingSEMICOLONATAC (bkbit.models.library_generation.LibraryTechnique attribute) number_10XMultiome_CellHashingSEMICOLONGEX (bkbit.models.library_generation.LibraryTechnique attribute) number_10xMultiomeSEMICOLONATAC (bkbit.models.library_generation.LibraryTechnique attribute) number_10xMultiomeSEMICOLONGEX (bkbit.models.library_generation.LibraryTechnique attribute) number_10xV3FULL_STOP1 (bkbit.models.library_generation.LibraryTechnique attribute) number_10xV3FULL_STOP1_CellPlexSEMICOLONBarcode (bkbit.models.library_generation.LibraryTechnique attribute) number_10xV3FULL_STOP1_CellPlexSEMICOLONGEX (bkbit.models.library_generation.LibraryTechnique attribute) number_10xV3FULL_STOP1_HT (bkbit.models.library_generation.LibraryTechnique attribute) number_10xV3FULL_STOP1_HT_CellPlexSEMICOLONBarcode (bkbit.models.library_generation.LibraryTechnique attribute) number_10xV3FULL_STOP1_HT_CellPlexSEMICOLONGEX (bkbit.models.library_generation.LibraryTechnique attribute) number_10xV4 (bkbit.models.library_generation.LibraryTechnique attribute) number_10xV4_OCM (bkbit.models.library_generation.LibraryTechnique attribute) number_2 (bkbit.models.library_generation.FastqFileAlignmentStatus attribute) (bkbit.models.library_generation.Sex attribute) number_2_Furanylfentanyl (bkbit.models.donor.DrugsFound attribute) number_2nt_001 (bkbit.models.library_generation.CellLabelBarcode attribute) number_2nt_002 (bkbit.models.library_generation.CellLabelBarcode attribute) number_2nt_003 (bkbit.models.library_generation.CellLabelBarcode attribute) number_2nt_004 (bkbit.models.library_generation.CellLabelBarcode attribute) number_3 (bkbit.models.library_generation.FastqFileAlignmentStatus attribute) number_3nt_001 (bkbit.models.library_generation.CellLabelBarcode attribute) number_3nt_002 (bkbit.models.library_generation.CellLabelBarcode attribute) number_3nt_003 (bkbit.models.library_generation.CellLabelBarcode attribute) number_3nt_004 (bkbit.models.library_generation.CellLabelBarcode attribute) number_3nt_005 (bkbit.models.library_generation.CellLabelBarcode attribute) number_3nt_006 (bkbit.models.library_generation.CellLabelBarcode attribute) number_4_ANPP (bkbit.models.donor.DrugsFound attribute) number_4PERCENT_SIGN_paraformaldehyde_fixed (bkbit.models.donor.Preparation attribute) number_6_Beta_Naltrexol___Free (bkbit.models.donor.DrugsFound attribute) number_6_Monoacetylmorphine (bkbit.models.donor.DrugsFound attribute) number_7 (bkbit.models.library_generation.Sex attribute) number_7_Amino_Clonazepam (bkbit.models.donor.DrugsFound attribute) number_7_Amino_Flunitrazepam (bkbit.models.donor.DrugsFound attribute) number_8 (bkbit.models.library_generation.Sex attribute) number_9 (bkbit.models.library_generation.Sex attribute) number_9_Hydroxyrisperidone (bkbit.models.donor.DrugsFound attribute) number_of_cells (bkbit.models.cell_taxonomy.CellTypeTaxon attribute) number_of_expected_cells (bkbit.models.library_generation.BarcodedCellSample attribute) number_of_observations (bkbit.models.cell_taxonomy.Cluster attribute) Nutritional_deficiencies (bkbit.models.donor.CauseOfDeath attribute) nwc (bkbit.models.donor.Language attribute) nya (bkbit.models.donor.Language attribute) nym (bkbit.models.donor.Language attribute) nyn (bkbit.models.donor.Language attribute) nyo (bkbit.models.donor.Language attribute) NZ (bkbit.models.donor.BirthCountry attribute) nzi (bkbit.models.donor.Language attribute)

O

O_Desmethyltramadol (bkbit.models.donor.DrugsFound attribute) O_Desmethylvenlafaxine (bkbit.models.donor.DrugsFound attribute) obs_counts() (in module bkbit.data_translators.ait_taxonomy_translator) Obsessive_compulsive_disorder (bkbit.models.donor.CauseOfDeath attribute) Obstructed_labour (bkbit.models.donor.CauseOfDeath attribute) Occurrent (class in bkbit.models.anatomical_structure) (class in bkbit.models.cell_taxonomy) (class in bkbit.models.donor) (class in bkbit.models.genome_annotation) (class in bkbit.models.library_generation) oci (bkbit.models.donor.Language attribute) Oesophageal_atresia (bkbit.models.donor.CauseOfDeath attribute) Oesophagus_cancer (bkbit.models.donor.CauseOfDeath attribute) oid() (in module bkbit.data_translators.ait_taxonomy_translator) oji (bkbit.models.donor.Language attribute) ok() (bkbit.data_translators.ait_taxonomy_translator.Report method) Olanzapine (bkbit.models.donor.DrugsFound attribute) OM (bkbit.models.donor.BirthCountry attribute) Onchocerciasis (bkbit.models.donor.CauseOfDeath attribute) Ondansetron (bkbit.models.donor.DrugsFound attribute) ONTOLOGY_PREDICATE (in module bkbit.data_translators.ait_taxonomy_translator) ONTOLOGY_PREFIXES (in module bkbit.data_translators.ait_taxonomy_translator) OntologyClass (class in bkbit.models.anatomical_structure) (class in bkbit.models.cell_taxonomy) (class in bkbit.models.donor) (class in bkbit.models.genome_annotation) (class in bkbit.models.library_generation) OntologyMappable (class in bkbit.models.cell_taxonomy) open_h5() (in module bkbit.data_translators.ait_taxonomy_translator) Opiates (bkbit.models.donor.DrugsFound attribute) Oral_conditions (bkbit.models.donor.CauseOfDeath attribute) order (bkbit.models.cell_taxonomy.CellTypeSet attribute) (bkbit.models.cell_taxonomy.CellTypeTaxon attribute) ordinal (bkbit.models.anatomical_structure.ParcellationTerm attribute) (bkbit.models.anatomical_structure.ParcellationTermSet attribute) (bkbit.models.cell_taxonomy.ParcellationTerm attribute) (bkbit.models.cell_taxonomy.ParcellationTermSet attribute) OrganismTaxon (class in bkbit.models.anatomical_structure) (class in bkbit.models.cell_taxonomy) (class in bkbit.models.donor) (class in bkbit.models.genome_annotation) (class in bkbit.models.library_generation) ori (bkbit.models.donor.Language attribute) orm (bkbit.models.donor.Language attribute) osa (bkbit.models.donor.Language attribute) oss (bkbit.models.donor.Language attribute) Osteoarthritis (bkbit.models.donor.CauseOfDeath attribute)

ota (bkbit.models.donor.Language attribute) Other (bkbit.models.donor.DonorSource attribute) other (bkbit.models.donor.Preparation attribute) (bkbit.models.donor.SexualOrientation attribute) (bkbit.models.donor.TissueSource attribute) Other_circulatory_diseases (bkbit.models.donor.CauseOfDeath attribute) Other_Congenital_anomalies (bkbit.models.donor.CauseOfDeath attribute) Other_digestive_diseases (bkbit.models.donor.CauseOfDeath attribute) Other_Findings (bkbit.models.donor.DrugsFound attribute) Other_findings_specify (bkbit.models.donor.DrugsFound attribute) Other_genitourinary_system_diseases (bkbit.models.donor.CauseOfDeath attribute) Other_infectious_diseases (bkbit.models.donor.CauseOfDeath attribute) Other_intentional_injuries (bkbit.models.donor.CauseOfDeath attribute) Other_intestinal_infections (bkbit.models.donor.CauseOfDeath attribute) Other_LEFT_PARENTHESISspecifyRIGHT_PARENTHESIS (bkbit.models.donor.AgingType attribute) (bkbit.models.donor.ArtifactType attribute) other_LEFT_PARENTHESISspecifyRIGHT_PARENTHESIS (bkbit.models.donor.ConditionType attribute) (bkbit.models.donor.InformantRelationship attribute) (bkbit.models.donor.NeoplasticType attribute) Other_LEFT_PARENTHESISspecifyRIGHT_PARENTHESIS (bkbit.models.donor.NeurodegenerativeType attribute) other_LEFT_PARENTHESISspecifyRIGHT_PARENTHESIS (bkbit.models.donor.PerinatalEvent attribute) (bkbit.models.donor.RelativeType attribute) Other_LEFT_PARENTHESISspecifyRIGHT_PARENTHESIS (bkbit.models.donor.TestName attribute) other_LEFT_PARENTHESISspecifyRIGHT_PARENTHESIS (bkbit.models.donor.TraumaticType attribute) (bkbit.models.donor.VascularType attribute) Other_malignant_neoplasms (bkbit.models.donor.CauseOfDeath attribute) Other_maternal_conditions (bkbit.models.donor.CauseOfDeath attribute) Other_musculoskeletal_disorders (bkbit.models.donor.CauseOfDeath attribute) Other_neoplasms (bkbit.models.donor.CauseOfDeath attribute) Other_neuropsychiatric_disorders (bkbit.models.donor.CauseOfDeath attribute) Other_nutritional_disorders (bkbit.models.donor.CauseOfDeath attribute) Other_oral_diseases (bkbit.models.donor.CauseOfDeath attribute) Other_perinatal_conditions (bkbit.models.donor.CauseOfDeath attribute) Other_Race (bkbit.models.donor.Race attribute) other_relative_LEFT_PARENTHESISspecifyRIGHT_PARENTHESIS (bkbit.models.donor.InformantRelationship attribute) Other_respiratory_diseases (bkbit.models.donor.CauseOfDeath attribute) Other_sense_organ_disorders (bkbit.models.donor.CauseOfDeath attribute) other_specify (bkbit.models.donor.Gender attribute) Other_STDs (bkbit.models.donor.CauseOfDeath attribute) Other_unintentional_injuries (bkbit.models.donor.CauseOfDeath attribute) Otitis_media (bkbit.models.donor.CauseOfDeath attribute) oto (bkbit.models.donor.Language attribute) ovary (bkbit.models.donor.Tissue attribute) Ovary_cancer (bkbit.models.donor.CauseOfDeath attribute) Oxazepam (bkbit.models.donor.DrugsFound attribute) Oxycodone (bkbit.models.donor.DrugsFound attribute) Oxycodone_SOLIDUS_Oxymorphone (bkbit.models.donor.DrugsFound attribute) Oxymorphone (bkbit.models.donor.DrugsFound attribute)

P

PA (bkbit.models.donor.BirthCountry attribute) paa (bkbit.models.donor.Language attribute) pag (bkbit.models.donor.Language attribute) pal (bkbit.models.donor.Language attribute) pam (bkbit.models.donor.Language attribute) pan (bkbit.models.donor.Language attribute) pancreas (bkbit.models.donor.Tissue attribute) Pancreas_cancer (bkbit.models.donor.CauseOfDeath attribute) Pancreatitis (bkbit.models.donor.CauseOfDeath attribute) Panic_disorder (bkbit.models.donor.CauseOfDeath attribute) pap (bkbit.models.donor.Language attribute) Papaverine (bkbit.models.donor.DrugsFound attribute) para_Fluoroisobutyrylfentanyl (bkbit.models.donor.DrugsFound attribute) Paralytic_ileus_and_intestinal_obstruction (bkbit.models.donor.CauseOfDeath attribute) parameterizes (bkbit.models.anatomical_structure.AnatomicalAnnotationSet attribute) (bkbit.models.cell_taxonomy.AnatomicalAnnotationSet attribute) ParcellationAnnotation (class in bkbit.models.anatomical_structure) (class in bkbit.models.cell_taxonomy) ParcellationAnnotationTermMap (class in bkbit.models.anatomical_structure) (class in bkbit.models.cell_taxonomy) ParcellationAtlas (class in bkbit.models.anatomical_structure) (class in bkbit.models.cell_taxonomy) ParcellationColorAssignment (class in bkbit.models.anatomical_structure) (class in bkbit.models.cell_taxonomy) ParcellationColorScheme (class in bkbit.models.anatomical_structure) (class in bkbit.models.cell_taxonomy) ParcellationTerm (class in bkbit.models.anatomical_structure) (class in bkbit.models.cell_taxonomy) ParcellationTerminology (class in bkbit.models.anatomical_structure) (class in bkbit.models.cell_taxonomy) ParcellationTermSet (class in bkbit.models.anatomical_structure) (class in bkbit.models.cell_taxonomy) parent (bkbit.models.donor.InformantRelationship attribute) Parkinson_disease (bkbit.models.donor.CauseOfDeath attribute) ParkinsonAPOSTROPHEs_disease (bkbit.models.donor.ConditionType attribute) Paroxetine (bkbit.models.donor.DrugsFound attribute) parse() (bkbit.data_translators.genome_annotation_translator.Gff3 method), [1] parse_dmp_content() (in module bkbit.utils.get_ncbi_taxonomy) (in module bkbit.utils.ncbi_taxonomy_cache) parse_gff3_file() (bkbit.data_translators.genome_annotation_translator.Gff3 method) parse_loc() (in module bkbit.data_translators.ait_taxonomy_translator) parse_multiple_nashids() (bkbit.data_translators.library_generation_translator.SpecimenPortal method) (in module bkbit.data_translators.library_generation_translator) parse_nhash_id_bottom_up() (bkbit.data_translators.library_generation_translator.SpecimenPortal method), [1] parse_nhash_id_top_down() (bkbit.data_translators.library_generation_translator.SpecimenPortal method), [1] parse_single_nashid() (bkbit.data_translators.library_generation_translator.SpecimenPortal method) (in module bkbit.data_translators.library_generation_translator) parse_url() (bkbit.data_translators.genome_annotation_translator.Gff3 method), [1] part_of_anatomical_annotation_set (bkbit.models.anatomical_structure.ParcellationAnnotation attribute) (bkbit.models.cell_taxonomy.ParcellationAnnotation attribute) part_of_cluster (bkbit.models.cell_taxonomy.Cell attribute) part_of_palette (bkbit.models.cell_taxonomy.DisplayColor attribute) part_of_parcellation_color_scheme (bkbit.models.anatomical_structure.ParcellationColorAssignment attribute) (bkbit.models.cell_taxonomy.ParcellationColorAssignment attribute) part_of_parcellation_term_set (bkbit.models.anatomical_structure.ParcellationTerm attribute) (bkbit.models.cell_taxonomy.ParcellationTerm attribute) part_of_parcellation_terminology (bkbit.models.anatomical_structure.ParcellationTermSet attribute) (bkbit.models.cell_taxonomy.ParcellationTermSet attribute) part_of_set (bkbit.models.cell_taxonomy.CellTypeTaxon attribute) (bkbit.models.cell_taxonomy.Cluster attribute) part_of_taxonomy (bkbit.models.cell_taxonomy.CellTypeSet attribute) Pass (bkbit.models.library_generation.AmplifiedCdnaRnaAmplificationPassFail attribute) (bkbit.models.library_generation.LibraryPrepPassFail attribute) patched_cell_structure (bkbit.models.library_generation.DissociatedCellSample attribute) PatchSeq_SmartSeq (bkbit.models.library_generation.BarcodedCellSampleTechnique attribute) paternal_aunt (bkbit.models.donor.RelativeType attribute) paternal_cousin (bkbit.models.donor.RelativeType attribute) paternal_grandfather (bkbit.models.donor.RelativeType attribute) paternal_grandmother (bkbit.models.donor.RelativeType attribute) paternal_nieceSOLIDUSnephew (bkbit.models.donor.RelativeType attribute) paternal_uncle (bkbit.models.donor.RelativeType attribute) pattern_cell_type_ontology_term() (bkbit.models.cell_taxonomy.CellTypeTaxon class method) pattern_color() (bkbit.models.cell_taxonomy.ParcellationColorAssignment class method) pattern_x_resolution() (bkbit.models.cell_taxonomy.ImageDataset class method) pattern_y_resolution() (bkbit.models.cell_taxonomy.ImageDataset class method) pattern_z_resolution() (bkbit.models.cell_taxonomy.ImageDataset class method) pau (bkbit.models.donor.Language attribute) pcr_cycles (bkbit.models.library_generation.AmplifiedCdna attribute) PE (bkbit.models.donor.BirthCountry attribute) Pentazocine (bkbit.models.donor.DrugsFound attribute) Pentobarbital (bkbit.models.donor.DrugsFound attribute) peo (bkbit.models.donor.Language attribute) Peptic_ulcer_disease (bkbit.models.donor.CauseOfDeath attribute) per_LEFT_PARENTHESISBRIGHT_PARENTHESIS (bkbit.models.donor.Language attribute) percent_cdna_longer_than_400bp (bkbit.models.library_generation.AmplifiedCdna attribute) Perinatal_conditions (bkbit.models.donor.CauseOfDeath attribute) PerinatalEvent (class in bkbit.models.donor) Periodontal_disease (bkbit.models.donor.CauseOfDeath attribute) peripheral_nerve (bkbit.models.donor.Tissue attribute) Perphenazine (bkbit.models.donor.DrugsFound attribute) Pertussis (bkbit.models.donor.CauseOfDeath attribute) PF (bkbit.models.donor.BirthCountry attribute) PG (bkbit.models.donor.BirthCountry attribute) PH (bkbit.models.donor.BirthCountry attribute) ph (bkbit.models.donor.Donor attribute) Phenazepam (bkbit.models.donor.DrugsFound attribute) Phencyclidine (bkbit.models.donor.DrugsFound attribute) Pheniramine (bkbit.models.donor.DrugsFound attribute) Phenobarbital (bkbit.models.donor.DrugsFound attribute) Phensuximide (bkbit.models.donor.DrugsFound attribute) Phentermine (bkbit.models.donor.DrugsFound attribute) Phenylethylmalonamide_LEFT_PARENTHESISPEMARIGHT_PARENTHESIS (bkbit.models.donor.DrugsFound attribute) Phenylpropanolamine (bkbit.models.donor.DrugsFound attribute) Phenyltoloxamine (bkbit.models.donor.DrugsFound attribute) Phenytoin (bkbit.models.donor.DrugsFound attribute) phi (bkbit.models.donor.Language attribute) phn (bkbit.models.donor.Language attribute) photo_2d_available (bkbit.models.donor.Donor attribute) PhysicalEntity (class in bkbit.models.anatomical_structure) (class in bkbit.models.cell_taxonomy) (class in bkbit.models.donor) (class in bkbit.models.genome_annotation) (class in bkbit.models.library_generation) PhysicalEssence (class in bkbit.models.anatomical_structure) (class in bkbit.models.cell_taxonomy) (class in bkbit.models.donor) (class in bkbit.models.genome_annotation) (class in bkbit.models.library_generation) PhysicalEssenceOrOccurrent (class in bkbit.models.anatomical_structure) (class in bkbit.models.cell_taxonomy) (class in bkbit.models.donor) (class in bkbit.models.genome_annotation) (class in bkbit.models.library_generation) pineal (bkbit.models.donor.Tissue attribute) PIPSeq_T20_3P_v4PLUS_SIGN (bkbit.models.library_generation.LibraryTechnique attribute) PIPSeq_T2_3P_v4PLUS_SIGN (bkbit.models.library_generation.LibraryTechnique attribute) Pittsburgh (bkbit.models.donor.Repository attribute) pituitary (bkbit.models.donor.Tissue attribute) PK (bkbit.models.donor.BirthCountry attribute) PL (bkbit.models.donor.BirthCountry attribute) placenta (bkbit.models.donor.Tissue attribute) plasma (bkbit.models.donor.Tissue attribute) (bkbit.models.donor.TissueSource attribute) pli (bkbit.models.donor.Language attribute) PM (bkbit.models.donor.BirthCountry attribute) PN (bkbit.models.donor.BirthCountry attribute) Poisonings (bkbit.models.donor.CauseOfDeath attribute) pol (bkbit.models.donor.Language attribute) Poliomyelitis (bkbit.models.donor.CauseOfDeath attribute) pon (bkbit.models.donor.Language attribute) por (bkbit.models.donor.Language attribute) port_well (bkbit.models.library_generation.BarcodedCellSample attribute) positive_test_result (bkbit.models.donor.Donor attribute) post_mortem_interval (bkbit.models.donor.Donor attribute) Post_traumatic_stress_disorder (bkbit.models.donor.CauseOfDeath attribute) posterior_to_anterior (bkbit.models.anatomical_structure.ANATOMICALDIRECTION attribute) (bkbit.models.cell_taxonomy.ANATOMICALDIRECTION attribute) postmortem_mri_available (bkbit.models.donor.Donor attribute) postmortem_mri_type (bkbit.models.donor.Donor attribute) PostmortemMRI (class in bkbit.models.donor) PR (bkbit.models.donor.BirthCountry attribute) pra (bkbit.models.donor.Language attribute) Prefer_not_to_answer (bkbit.models.donor.Ethnicity attribute) Prefer_not_to_Answer (bkbit.models.donor.Race attribute) prefer_not_to_answer (bkbit.models.donor.Sex attribute) prefer_not_to_say (bkbit.models.donor.SexualOrientation attribute) prep_set (bkbit.models.library_generation.Library attribute) Preparation (class in bkbit.models.donor) preparation_date (bkbit.models.library_generation.AmplifiedCdna attribute) (bkbit.models.library_generation.BarcodedCellSample attribute) (bkbit.models.library_generation.DissociatedCellSample attribute) (bkbit.models.library_generation.EnrichedCellSample attribute) (bkbit.models.library_generation.Library attribute) (bkbit.models.library_generation.LibraryPool attribute) primary_language (bkbit.models.donor.Donor attribute) Primidone (bkbit.models.donor.DrugsFound attribute) pro (bkbit.models.donor.Language attribute)

Procainamide (bkbit.models.donor.DrugsFound attribute) Procedure (class in bkbit.models.anatomical_structure) (class in bkbit.models.cell_taxonomy) (class in bkbit.models.donor) (class in bkbit.models.genome_annotation) (class in bkbit.models.library_generation) process_and_save_taxdmp_in_memory() (in module bkbit.utils.get_ncbi_taxonomy) process_csv() (in module bkbit.data_translators.file_manifest_translator) process_row() (in module bkbit.data_translators.file_manifest_translator) Prochlorperazine (bkbit.models.donor.DrugsFound attribute) professional_caregiver (bkbit.models.donor.InformantRelationship attribute) Promazine (bkbit.models.donor.DrugsFound attribute) Promethazine (bkbit.models.donor.DrugsFound attribute) Propofol (bkbit.models.donor.DrugsFound attribute) Propoxyphene (bkbit.models.donor.DrugsFound attribute) prostate (bkbit.models.donor.Tissue attribute) Prostate_cancer (bkbit.models.donor.CauseOfDeath attribute) protein_coding (bkbit.models.cell_taxonomy.BioType attribute) (bkbit.models.genome_annotation.BioType attribute) Protein_energy_malnutrition (bkbit.models.donor.CauseOfDeath attribute) Protriptyline (bkbit.models.donor.DrugsFound attribute) ProvActivity (class in bkbit.models.cell_taxonomy) (class in bkbit.models.donor) (class in bkbit.models.library_generation) ProvEntity (class in bkbit.models.cell_taxonomy) (class in bkbit.models.donor) (class in bkbit.models.library_generation) provide_data() (bkbit.data_translators.anatomical_structure_translator.AnS method) provided_by (bkbit.models.anatomical_structure.Activity attribute) (bkbit.models.anatomical_structure.AnatomicalAnnotationSet attribute) (bkbit.models.anatomical_structure.AnatomicalSpace attribute) (bkbit.models.anatomical_structure.Attribute attribute) (bkbit.models.anatomical_structure.BiologicalEntity attribute) (bkbit.models.anatomical_structure.Dataset attribute) (bkbit.models.anatomical_structure.Gene attribute) (bkbit.models.anatomical_structure.Genome attribute) (bkbit.models.anatomical_structure.ImageDataset attribute) (bkbit.models.anatomical_structure.InformationContentEntity attribute) (bkbit.models.anatomical_structure.MaterialSample attribute) (bkbit.models.anatomical_structure.NamedThing attribute) (bkbit.models.anatomical_structure.OrganismTaxon attribute) (bkbit.models.anatomical_structure.ParcellationAtlas attribute) (bkbit.models.anatomical_structure.ParcellationColorScheme attribute) (bkbit.models.anatomical_structure.ParcellationTerm attribute) (bkbit.models.anatomical_structure.ParcellationTerminology attribute) (bkbit.models.anatomical_structure.ParcellationTermSet attribute) (bkbit.models.anatomical_structure.PhysicalEntity attribute) (bkbit.models.anatomical_structure.Procedure attribute) (bkbit.models.anatomical_structure.VersionedNamedThing attribute) (bkbit.models.cell_taxonomy.Abbreviation attribute) (bkbit.models.cell_taxonomy.Activity attribute) (bkbit.models.cell_taxonomy.AnatomicalAnnotationSet attribute) (bkbit.models.cell_taxonomy.AnatomicalSpace attribute) (bkbit.models.cell_taxonomy.Attribute attribute) (bkbit.models.cell_taxonomy.BiologicalEntity attribute) (bkbit.models.cell_taxonomy.Cell attribute) (bkbit.models.cell_taxonomy.CellTypeSet attribute) (bkbit.models.cell_taxonomy.CellTypeTaxon attribute) (bkbit.models.cell_taxonomy.CellTypeTaxonomy attribute) (bkbit.models.cell_taxonomy.Cluster attribute) (bkbit.models.cell_taxonomy.ClusterSet attribute) (bkbit.models.cell_taxonomy.ColorPalette attribute) (bkbit.models.cell_taxonomy.Dataset attribute) (bkbit.models.cell_taxonomy.DisplayColor attribute) (bkbit.models.cell_taxonomy.Embedding attribute) (bkbit.models.cell_taxonomy.ExpressionMatrix attribute) (bkbit.models.cell_taxonomy.Gene attribute) (bkbit.models.cell_taxonomy.GeneAnnotation attribute) (bkbit.models.cell_taxonomy.Genome attribute) (bkbit.models.cell_taxonomy.GenomeAnnotation attribute) (bkbit.models.cell_taxonomy.GenomeAssembly attribute) (bkbit.models.cell_taxonomy.ImageDataset attribute) (bkbit.models.cell_taxonomy.InformationContentEntity attribute) (bkbit.models.cell_taxonomy.MaterialSample attribute) (bkbit.models.cell_taxonomy.NamedThing attribute) (bkbit.models.cell_taxonomy.OrganismTaxon attribute) (bkbit.models.cell_taxonomy.ParcellationAtlas attribute) (bkbit.models.cell_taxonomy.ParcellationColorScheme attribute) (bkbit.models.cell_taxonomy.ParcellationTerm attribute) (bkbit.models.cell_taxonomy.ParcellationTerminology attribute) (bkbit.models.cell_taxonomy.ParcellationTermSet attribute) (bkbit.models.cell_taxonomy.PhysicalEntity attribute) (bkbit.models.cell_taxonomy.Procedure attribute) (bkbit.models.cell_taxonomy.RelativeFrequencyAnalysisResult attribute) (bkbit.models.cell_taxonomy.StudyResult attribute) (bkbit.models.cell_taxonomy.VersionedNamedThing attribute) (bkbit.models.donor.Activity attribute) (bkbit.models.donor.Attribute attribute) (bkbit.models.donor.BiologicalEntity attribute) (bkbit.models.donor.Dataset attribute) (bkbit.models.donor.Donor attribute) (bkbit.models.donor.Gene attribute) (bkbit.models.donor.Genome attribute) (bkbit.models.donor.InformationContentEntity attribute) (bkbit.models.donor.MaterialSample attribute) (bkbit.models.donor.NamedThing attribute) (bkbit.models.donor.OrganismTaxon attribute) (bkbit.models.donor.PhysicalEntity attribute) (bkbit.models.donor.Procedure attribute) (bkbit.models.donor.RelativeFrequencyAnalysisResult attribute) (bkbit.models.donor.StudyResult attribute) (bkbit.models.genome_annotation.Activity attribute) (bkbit.models.genome_annotation.Attribute attribute) (bkbit.models.genome_annotation.BiologicalEntity attribute) (bkbit.models.genome_annotation.Dataset attribute) (bkbit.models.genome_annotation.Gene attribute) (bkbit.models.genome_annotation.GeneAnnotation attribute) (bkbit.models.genome_annotation.Genome attribute) (bkbit.models.genome_annotation.GenomeAnnotation attribute) (bkbit.models.genome_annotation.GenomeAssembly attribute) (bkbit.models.genome_annotation.InformationContentEntity attribute) (bkbit.models.genome_annotation.MaterialSample attribute) (bkbit.models.genome_annotation.NamedThing attribute) (bkbit.models.genome_annotation.OrganismTaxon attribute) (bkbit.models.genome_annotation.PhysicalEntity attribute) (bkbit.models.genome_annotation.Procedure attribute) (bkbit.models.genome_annotation.RelativeFrequencyAnalysisResult attribute) (bkbit.models.genome_annotation.StudyResult attribute) (bkbit.models.genome_annotation.VersionedNamedThing attribute) (bkbit.models.library_generation.Activity attribute) (bkbit.models.library_generation.AmplifiedCdna attribute) (bkbit.models.library_generation.Attribute attribute) (bkbit.models.library_generation.BarcodedCellSample attribute) (bkbit.models.library_generation.BiologicalEntity attribute) (bkbit.models.library_generation.BrainSlab attribute) (bkbit.models.library_generation.CdnaAmplification attribute) (bkbit.models.library_generation.CellBarcoding attribute) (bkbit.models.library_generation.CellDissociation attribute) (bkbit.models.library_generation.CellEnrichment attribute) (bkbit.models.library_generation.Dataset attribute) (bkbit.models.library_generation.DigitalAsset attribute) (bkbit.models.library_generation.DissectionRoiDelineation attribute) (bkbit.models.library_generation.DissociatedCellSample attribute) (bkbit.models.library_generation.Donor attribute) (bkbit.models.library_generation.EnrichedCellSample attribute) (bkbit.models.library_generation.EnrichedCellSampleSplitting attribute) (bkbit.models.library_generation.Gene attribute) (bkbit.models.library_generation.Genome attribute) (bkbit.models.library_generation.InformationContentEntity attribute) (bkbit.models.library_generation.Library attribute) (bkbit.models.library_generation.LibraryAliquot attribute) (bkbit.models.library_generation.LibraryConstruction attribute) (bkbit.models.library_generation.LibraryPool attribute) (bkbit.models.library_generation.LibraryPooling attribute) (bkbit.models.library_generation.MaterialSample attribute) (bkbit.models.library_generation.NamedThing attribute) (bkbit.models.library_generation.OrganismTaxon attribute) (bkbit.models.library_generation.PhysicalEntity attribute) (bkbit.models.library_generation.Procedure attribute) (bkbit.models.library_generation.RelativeFrequencyAnalysisResult attribute) (bkbit.models.library_generation.StudyResult attribute) (bkbit.models.library_generation.TissueDissection attribute) (bkbit.models.library_generation.TissueSample attribute) (bkbit.models.library_generation.VersionedNamedThing attribute) PS (bkbit.models.donor.BirthCountry attribute) Pseudoephedrine (bkbit.models.donor.DrugsFound attribute) Psilocin (bkbit.models.donor.DrugsFound attribute) psoas_muscle (bkbit.models.donor.Tissue attribute) PT (bkbit.models.donor.BirthCountry attribute) pTau (bkbit.models.donor.AgingType attribute) (bkbit.models.donor.NeurodegenerativeType attribute) pTDP_43 (bkbit.models.donor.AgingType attribute) (bkbit.models.donor.NeurodegenerativeType attribute) pus (bkbit.models.donor.Language attribute) PW (bkbit.models.donor.BirthCountry attribute) PY (bkbit.models.donor.BirthCountry attribute) Pyrilamine (bkbit.models.donor.DrugsFound attribute)

Q

QA (bkbit.models.donor.BirthCountry attribute) qaa_qtz (bkbit.models.donor.Language attribute) quality_control_markers (bkbit.models.cell_taxonomy.CellTypeTaxonomy attribute) quantity_fmol (bkbit.models.library_generation.Library attribute) QuantityValue (class in bkbit.models.anatomical_structure) (class in bkbit.models.cell_taxonomy) (class in bkbit.models.donor) (class in bkbit.models.genome_annotation) (class in bkbit.models.library_generation)

que (bkbit.models.donor.Language attribute) Quetiapine (bkbit.models.donor.DrugsFound attribute) Quinidine (bkbit.models.donor.DrugsFound attribute) Quinine (bkbit.models.donor.DrugsFound attribute)

R

r1_r2_index (bkbit.models.library_generation.Library attribute) race (bkbit.models.donor.Donor attribute) Race (class in bkbit.models.donor) raj (bkbit.models.donor.Language attribute) rap (bkbit.models.donor.Language attribute) rar (bkbit.models.donor.Language attribute) raw_count (bkbit.models.cell_taxonomy.ExpressionMatrixType attribute) RBC (bkbit.models.donor.Tissue attribute) RE (bkbit.models.donor.BirthCountry attribute) read_and_parse_gsheet_yaml() (in module bkbit.model_converters.sheets_converter) read_col() (in module bkbit.data_translators.ait_taxonomy_translator) read_data() (bkbit.data_translators.anatomical_structure_translator.AnS method) read_uns_scalar() (in module bkbit.data_translators.ait_taxonomy_translator) reference_assembly (bkbit.models.cell_taxonomy.GenomeAnnotation attribute) (bkbit.models.genome_annotation.GenomeAnnotation attribute) reference_genome (bkbit.models.cell_taxonomy.CellTypeTaxonomy attribute) referenced_in (bkbit.models.cell_taxonomy.GeneAnnotation attribute) (bkbit.models.genome_annotation.GeneAnnotation attribute) Refused (bkbit.models.donor.IncomeRange attribute) related_match (bkbit.models.cell_taxonomy.Abbreviation attribute) (bkbit.models.cell_taxonomy.CellTypeTaxon attribute) (bkbit.models.cell_taxonomy.OntologyMappable attribute) RelativeFrequencyAnalysisResult (class in bkbit.models.cell_taxonomy) (class in bkbit.models.donor) (class in bkbit.models.genome_annotation) (class in bkbit.models.library_generation) RelativeType (class in bkbit.models.donor) Renal_agenesis (bkbit.models.donor.CauseOfDeath attribute) Report (class in bkbit.data_translators.ait_taxonomy_translator) repository (bkbit.models.donor.Donor attribute) Repository (class in bkbit.models.donor) resolve() (bkbit.data_translators.ait_taxonomy_translator.GeneIndex method) resolve_markers() (in module bkbit.data_translators.ait_taxonomy_translator) resolved (bkbit.data_translators.ait_taxonomy_translator.Report attribute) Respiratory_diseases (bkbit.models.donor.CauseOfDeath attribute) Respiratory_infections (bkbit.models.donor.CauseOfDeath attribute) revision_of (bkbit.models.anatomical_structure.AnatomicalAnnotationSet attribute) (bkbit.models.anatomical_structure.AnatomicalSpace attribute) (bkbit.models.anatomical_structure.ImageDataset attribute) (bkbit.models.anatomical_structure.ParcellationAtlas attribute) (bkbit.models.anatomical_structure.ParcellationColorScheme attribute) (bkbit.models.anatomical_structure.ParcellationTerm attribute) (bkbit.models.anatomical_structure.ParcellationTerminology attribute) (bkbit.models.anatomical_structure.ParcellationTermSet attribute) (bkbit.models.anatomical_structure.VersionedNamedThing attribute) (bkbit.models.cell_taxonomy.AnatomicalAnnotationSet attribute) (bkbit.models.cell_taxonomy.AnatomicalSpace attribute) (bkbit.models.cell_taxonomy.ImageDataset attribute) (bkbit.models.cell_taxonomy.ParcellationAtlas attribute) (bkbit.models.cell_taxonomy.ParcellationColorScheme attribute) (bkbit.models.cell_taxonomy.ParcellationTerm attribute) (bkbit.models.cell_taxonomy.ParcellationTerminology attribute) (bkbit.models.cell_taxonomy.ParcellationTermSet attribute) (bkbit.models.cell_taxonomy.VersionedNamedThing attribute) (bkbit.models.genome_annotation.VersionedNamedThing attribute) (bkbit.models.library_generation.VersionedNamedThing attribute)

Rheumatic_heart_disease (bkbit.models.donor.CauseOfDeath attribute) Rheumatoid_arthritis (bkbit.models.donor.CauseOfDeath attribute) right (bkbit.models.donor.Handedness attribute) (bkbit.models.donor.Hemisphere attribute) right_hemisphere_prep_2 (bkbit.models.donor.Donor attribute) right_hemisphere_preparation (bkbit.models.donor.Donor attribute) rights (bkbit.models.anatomical_structure.Dataset attribute) (bkbit.models.anatomical_structure.InformationContentEntity attribute) (bkbit.models.cell_taxonomy.Dataset attribute) (bkbit.models.cell_taxonomy.InformationContentEntity attribute) (bkbit.models.cell_taxonomy.RelativeFrequencyAnalysisResult attribute) (bkbit.models.cell_taxonomy.StudyResult attribute) (bkbit.models.donor.Dataset attribute) (bkbit.models.donor.InformationContentEntity attribute) (bkbit.models.donor.RelativeFrequencyAnalysisResult attribute) (bkbit.models.donor.StudyResult attribute) (bkbit.models.genome_annotation.Dataset attribute) (bkbit.models.genome_annotation.InformationContentEntity attribute) (bkbit.models.genome_annotation.RelativeFrequencyAnalysisResult attribute) (bkbit.models.genome_annotation.StudyResult attribute) (bkbit.models.library_generation.Dataset attribute) (bkbit.models.library_generation.DigitalAsset attribute) (bkbit.models.library_generation.InformationContentEntity attribute) (bkbit.models.library_generation.RelativeFrequencyAnalysisResult attribute) (bkbit.models.library_generation.StudyResult attribute) rin (bkbit.models.donor.Donor attribute) rine (bkbit.models.donor.Donor attribute) rines_data_available (bkbit.models.donor.Donor attribute) rins_data_available (bkbit.models.donor.Donor attribute) Risperidone (bkbit.models.donor.DrugsFound attribute) RNA (bkbit.models.donor.Tissue attribute) RO (bkbit.models.donor.BirthCountry attribute) roa (bkbit.models.donor.Language attribute) Road_traffic_accidents (bkbit.models.donor.CauseOfDeath attribute) roh (bkbit.models.donor.Language attribute) rom (bkbit.models.donor.Language attribute) ron_LEFT_PARENTHESISTRIGHT_PARENTHESIS (bkbit.models.donor.Language attribute) root (bkbit.models.anatomical_structure.LinkMLMeta attribute) (bkbit.models.cell_taxonomy.LinkMLMeta attribute) (bkbit.models.donor.LinkMLMeta attribute) (bkbit.models.genome_annotation.LinkMLMeta attribute) (bkbit.models.library_generation.LinkMLMeta attribute) RS (bkbit.models.donor.BirthCountry attribute) RU (bkbit.models.donor.BirthCountry attribute) Rufinamide (bkbit.models.donor.DrugsFound attribute) rum_LEFT_PARENTHESISBRIGHT_PARENTHESIS (bkbit.models.donor.Language attribute) run (bkbit.models.donor.Language attribute) rup (bkbit.models.donor.Language attribute) rus (bkbit.models.donor.Language attribute) RW (bkbit.models.donor.BirthCountry attribute)

S

SA (bkbit.models.donor.BirthCountry attribute) sacral_spinal_cord (bkbit.models.donor.Tissue attribute) sad (bkbit.models.donor.Language attribute) sag (bkbit.models.donor.Language attribute) sah (bkbit.models.donor.Language attribute) sai (bkbit.models.donor.Language attribute) sal (bkbit.models.donor.Language attribute) Salicylates (bkbit.models.donor.DrugsFound attribute) sam (bkbit.models.donor.Language attribute) san (bkbit.models.donor.Language attribute) sas (bkbit.models.donor.Language attribute) sat (bkbit.models.donor.Language attribute) SB (bkbit.models.donor.BirthCountry attribute) SC (bkbit.models.donor.BirthCountry attribute) scan_3d_available (bkbit.models.donor.Donor attribute) scATAC_seq (bkbit.models.library_generation.LibraryTechnique attribute) schema_version (bkbit.models.cell_taxonomy.CellTypeTaxonomy attribute) schemaview (bkbit.model_editors.linkml_trimmer.YamlTrimmer attribute) Schistosomiasis (bkbit.models.donor.CauseOfDeath attribute) Schizophrenia (bkbit.models.donor.CauseOfDeath attribute) schizophrenia (bkbit.models.donor.ConditionType attribute) scn (bkbit.models.donor.Language attribute) sco (bkbit.models.donor.Language attribute) Scope_Statement (bkbit.models.donor.DrugsFound attribute) SD (bkbit.models.donor.BirthCountry attribute) SE (bkbit.models.donor.BirthCountry attribute) Secobarbital (bkbit.models.donor.DrugsFound attribute) secondary_language (bkbit.models.donor.Donor attribute) secondary_race (bkbit.models.donor.Donor attribute) sel (bkbit.models.donor.Language attribute) Self_inflicted_injuries (bkbit.models.donor.CauseOfDeath attribute) sem (bkbit.models.donor.Language attribute) Sense_organ_diseases (bkbit.models.donor.CauseOfDeath attribute) separated (bkbit.models.donor.MaritalStatus attribute) Sepulveda (bkbit.models.donor.Repository attribute) serialize() (bkbit.model_editors.linkml_trimmer.YamlTrimmer method), [1] serialize_to_jsonld() (bkbit.data_translators.anatomical_structure_translator.AnS method) (bkbit.data_translators.genome_annotation_translator.Gff3 method), [1] (bkbit.data_translators.library_generation_translator.SpecimenPortal method), [1] (in module bkbit.data_translators.file_manifest_translator) Sertraline (bkbit.models.donor.DrugsFound attribute) serum (bkbit.models.donor.Tissue attribute) (bkbit.models.donor.TissueSource attribute) SetB_A1 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_A10 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_A11 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_A12 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_A13 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_A14 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_A15 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_A16 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_A17 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_A18 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_A19 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_A2 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_A20 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_A21 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_A22 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_A23 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_A24 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_A3 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_A4 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_A5 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_A6 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_A7 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_A8 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_A9 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_B1 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_B10 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_B11 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_B12 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_B13 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_B14 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_B15 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_B16 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_B17 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_B18 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_B19 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_B2 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_B20 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_B21 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_B22 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_B23 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_B24 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_B3 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_B4 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_B5 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_B6 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_B7 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_B8 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_B9 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_C1 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_C10 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_C11 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_C12 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_C13 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_C14 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_C15 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_C16 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_C17 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_C18 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_C19 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_C2 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_C20 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_C21 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_C22 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_C23 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_C24 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_C3 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_C4 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_C5 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_C6 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_C7 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_C8 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_C9 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_D1 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_D10 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_D11 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_D12 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_D13 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_D14 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_D15 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_D16 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_D17 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_D18 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_D19 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_D2 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_D20 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_D21 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_D22 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_D23 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_D24 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_D3 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_D4 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_D5 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_D6 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_D7 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_D8 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_D9 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_E1 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_E10 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_E11 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_E12 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_E13 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_E14 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_E15 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_E16 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_E17 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_E18 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_E19 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_E2 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_E20 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_E21 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_E22 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_E23 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_E24 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_E3 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_E4 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_E5 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_E6 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_E7 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_E8 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_E9 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_F1 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_F10 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_F11 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_F12 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_F13 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_F14 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_F15 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_F16 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_F17 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_F18 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_F19 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_F2 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_F20 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_F21 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_F22 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_F23 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_F24 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_F3 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_F4 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_F5 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_F6 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_F7 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_F8 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_F9 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_G1 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_G10 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_G11 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_G12 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_G13 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_G14 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_G15 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_G16 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_G17 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_G18 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_G19 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_G2 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_G20 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_G21 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_G22 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_G23 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_G24 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_G3 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_G4 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_G5 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_G6 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_G7 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_G8 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_G9 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_H1 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_H10 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_H11 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_H12 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_H13 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_H14 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_H15 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_H16 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_H17 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_H18 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_H19 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_H2 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_H20 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_H21 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_H22 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_H23 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_H24 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_H3 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_H4 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_H5 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_H6 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_H7 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_H8 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_H9 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_I1 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_I10 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_I11 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_I12 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_I13 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_I14 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_I15 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_I16 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_I17 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_I18 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_I19 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_I2 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_I20 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_I21 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_I22 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_I23 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_I24 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_I3 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_I4 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_I5 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_I6 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_I7 (bkbit.models.library_generation.LibraryR1R2Index attribute) SetB_I8 (bkbit.models.library_generation.LibraryR1R2Index attribute) setup() (bkbit.data_translators.genome_annotation_translator.Gff3 method) setup_logger() (in module bkbit.utils.setup_logger) sex (bkbit.models.donor.Donor attribute) Sex (class in bkbit.models.donor) (class in bkbit.models.library_generation) sex_orientation (bkbit.models.donor.Donor attribute) SexualOrientation (class in bkbit.models.donor) SG (bkbit.models.donor.BirthCountry attribute) sga (bkbit.models.donor.Language attribute) sgn (bkbit.models.donor.Language attribute) SH (bkbit.models.donor.BirthCountry attribute) SHA1 (bkbit.models.anatomical_structure.DigestType attribute) (bkbit.models.cell_taxonomy.DigestType attribute) (bkbit.models.genome_annotation.DigestType attribute) (bkbit.models.library_generation.DigestType attribute) SHA256 (bkbit.models.anatomical_structure.DigestType attribute) (bkbit.models.cell_taxonomy.DigestType attribute) (bkbit.models.genome_annotation.DigestType attribute) (bkbit.models.library_generation.DigestType attribute) shn (bkbit.models.donor.Language attribute) SI (bkbit.models.donor.BirthCountry attribute) SI_NA_A1 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_A10 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_A11 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_A12 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_A2 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_A3 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_A4 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_A5 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_A6 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_A7 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_A8 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_A9 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_B1 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_B10 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_B11 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_B12 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_B2 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_B3 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_B4 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_B5 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_B6 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_B7 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_B8 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_B9 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_C1 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_C10 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_C11 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_C12 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_C2 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_C3 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_C4 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_C5 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_C6 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_C7 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_C8 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_C9 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_D1 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_D10 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_D11 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_D12 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_D2 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_D3 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_D4 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_D5 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_D6 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_D7 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_D8 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_D9 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_E1 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_E10 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_E11 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_E12 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_E2 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_E3 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_E4 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_E5 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_E6 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_E7 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_E8 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_E9 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_F1 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_F10 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_F11 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_F12 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_F2 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_F3 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_F4 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_F5 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_F6 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_F7 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_F8 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_F9 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_G1 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_G10 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_G11 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_G12 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_G2 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_G3 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_G4 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_G5 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_G6 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_G7 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_G8 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_G9 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_H1 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_H10 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_H11 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_H12 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_H2 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_H3 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_H4 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_H5 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_H6 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_H7 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_H8 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NA_H9 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_A1 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_A10 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_A11 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_A12 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_A2 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_A3 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_A4 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_A5 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_A6 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_A7 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_A8 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_A9 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_B1 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_B10 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_B11 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_B12 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_B2 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_B3 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_B4 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_B5 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_B6 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_B7 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_B8 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_B9 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_C1 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_C10 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_C11 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_C12 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_C2 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_C3 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_C4 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_C5 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_C6 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_C7 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_C8 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_C9 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_D1 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_D10 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_D11 (bkbit.models.library_generation.LibraryR1R2Index attribute)

SI_NN_D12 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_D2 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_D3 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_D4 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_D5 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_D6 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_D7 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_D8 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_D9 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_E1 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_E10 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_E11 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_E12 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_E2 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_E3 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_E4 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_E5 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_E6 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_E7 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_E8 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_E9 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_F1 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_F10 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_F11 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_F12 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_F2 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_F3 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_F4 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_F5 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_F6 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_F7 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_F8 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_F9 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_G1 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_G10 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_G11 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_G12 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_G2 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_G3 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_G4 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_G5 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_G6 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_G7 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_G8 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_G9 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_H1 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_H10 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_H11 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_H12 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_H2 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_H3 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_H4 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_H5 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_H6 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_H7 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_H8 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_NN_H9 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_A1 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_A10 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_A11 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_A12 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_A2 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_A3 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_A4 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_A5 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_A6 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_A7 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_A8 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_A9 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_B1 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_B10 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_B11 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_B12 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_B2 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_B3 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_B4 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_B5 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_B6 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_B7 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_B8 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_B9 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_C1 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_C10 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_C11 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_C12 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_C2 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_C3 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_C4 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_C5 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_C6 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_C7 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_C8 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_C9 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_D1 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_D10 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_D11 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_D12 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_D2 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_D3 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_D4 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_D5 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_D6 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_D7 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_D8 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_D9 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_E1 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_E10 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_E11 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_E12 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_E2 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_E3 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_E4 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_E5 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_E6 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_E7 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_E8 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_E9 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_F1 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_F10 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_F11 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_F12 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_F2 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_F3 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_F4 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_F5 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_F6 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_F7 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_F8 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_F9 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_G1 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_G10 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_G11 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_G12 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_G2 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_G3 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_G4 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_G5 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_G6 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_G7 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_G8 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_G9 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_H1 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_H10 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_H11 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_H12 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_H2 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_H3 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_H4 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_H5 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_H6 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_H7 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_H8 (bkbit.models.library_generation.LibraryR1R2Index attribute) SI_TT_H9 (bkbit.models.library_generation.LibraryR1R2Index attribute) sibling (bkbit.models.donor.InformantRelationship attribute) sid (bkbit.models.donor.Language attribute) Sildenafil (bkbit.models.donor.DrugsFound attribute) sin (bkbit.models.donor.Language attribute) sio (bkbit.models.donor.Language attribute) sit (bkbit.models.donor.Language attribute) SJ (bkbit.models.donor.BirthCountry attribute) SK (bkbit.models.donor.BirthCountry attribute) skin (bkbit.models.donor.Tissue attribute) Skin_diseases (bkbit.models.donor.CauseOfDeath attribute) SL (bkbit.models.donor.BirthCountry attribute) sla (bkbit.models.donor.Language attribute) Slide_seq_MERFISH (bkbit.models.library_generation.LibraryTechnique attribute) Slide_tag_10x5Pv2SEMICOLONGEX (bkbit.models.library_generation.LibraryTechnique attribute) Slide_tag_10x5Pv2SEMICOLONSpatial (bkbit.models.library_generation.LibraryTechnique attribute) Slide_tag_10xV4SEMICOLONGEX (bkbit.models.library_generation.LibraryTechnique attribute) Slide_tag_10xV4SEMICOLONSpatial (bkbit.models.library_generation.LibraryTechnique attribute) Slide_tag_PIPSeq_T100_3P_v4PLUS_SIGNSEMICOLONGEX (bkbit.models.library_generation.LibraryTechnique attribute) Slide_tag_PIPSeq_T100_3P_v4PLUS_SIGNSEMICOLONSpatial (bkbit.models.library_generation.LibraryTechnique attribute) Slide_tag_PIPSeq_T20_3P_v4PLUS_SIGNSEMICOLONGEX (bkbit.models.library_generation.LibraryTechnique attribute) Slide_tag_PIPSeq_T20_3P_v4PLUS_SIGNSEMICOLONSpatial (bkbit.models.library_generation.LibraryTechnique attribute) Slide_tag_recon (bkbit.models.library_generation.BarcodedCellSampleTechnique attribute) Slide_tag_std (bkbit.models.library_generation.BarcodedCellSampleTechnique attribute) Slide_tag_TruSeqSEMICOLONRecon (bkbit.models.library_generation.LibraryTechnique attribute) slk_LEFT_PARENTHESISTRIGHT_PARENTHESIS (bkbit.models.donor.Language attribute) slo_LEFT_PARENTHESISBRIGHT_PARENTHESIS (bkbit.models.donor.Language attribute) slv (bkbit.models.donor.Language attribute) SM (bkbit.models.donor.BirthCountry attribute) sma (bkbit.models.donor.Language attribute) SmartSeq (bkbit.models.library_generation.BarcodedCellSampleTechnique attribute) SmartSeq3 (bkbit.models.library_generation.LibraryTechnique attribute) SMARTSeqSC (bkbit.models.library_generation.LibraryTechnique attribute) SMARTSeqV4 (bkbit.models.library_generation.LibraryTechnique attribute) sme (bkbit.models.donor.Language attribute) smi (bkbit.models.donor.Language attribute) smj (bkbit.models.donor.Language attribute) smn (bkbit.models.donor.Language attribute) smo (bkbit.models.donor.Language attribute) sms (bkbit.models.donor.Language attribute) SN (bkbit.models.donor.BirthCountry attribute) sna (bkbit.models.donor.Language attribute) snd (bkbit.models.donor.Language attribute) snk (bkbit.models.donor.Language attribute) snm3C_seq (bkbit.models.library_generation.BarcodedCellSampleTechnique attribute) (bkbit.models.library_generation.LibraryTechnique attribute) snmCT_seq (bkbit.models.library_generation.BarcodedCellSampleTechnique attribute) (bkbit.models.library_generation.LibraryTechnique attribute) SO (bkbit.models.donor.BirthCountry attribute) sog (bkbit.models.donor.Language attribute) som (bkbit.models.donor.Language attribute) son (bkbit.models.donor.Language attribute) sot (bkbit.models.donor.Language attribute) source (bkbit.data_translators.ait_taxonomy_translator.GeneIndex attribute) source_as_uri() (in module bkbit.data_translators.ait_taxonomy_translator) source_file (bkbit.data_translators.ait_taxonomy_translator.Report attribute) source_id (bkbit.models.cell_taxonomy.GeneAnnotation attribute) (bkbit.models.genome_annotation.GeneAnnotation attribute) spa (bkbit.models.donor.Language attribute) specialization_of (bkbit.models.anatomical_structure.ParcellationAtlas attribute) (bkbit.models.cell_taxonomy.ParcellationAtlas attribute) species (bkbit.data_translators.ait_taxonomy_translator.Report attribute) Species (class in bkbit.models.library_generation) SpecimenPortal (class in bkbit.data_translators.library_generation_translator) Spina_bifida (bkbit.models.donor.CauseOfDeath attribute) spleen (bkbit.models.donor.Tissue attribute) split_values() (in module bkbit.data_translators.ait_taxonomy_translator) spouseSOLIDUSpartner (bkbit.models.donor.InformantRelationship attribute) sqi_LEFT_PARENTHESISTRIGHT_PARENTHESIS (bkbit.models.donor.Language attribute) SR (bkbit.models.donor.BirthCountry attribute) srd (bkbit.models.donor.Language attribute) srn (bkbit.models.donor.Language attribute) srp (bkbit.models.donor.Language attribute) srr (bkbit.models.donor.Language attribute) SS (bkbit.models.donor.BirthCountry attribute) ssa (bkbit.models.donor.Language attribute) ssw (bkbit.models.donor.Language attribute) ST (bkbit.models.donor.BirthCountry attribute) STDs_excluding_HIV (bkbit.models.donor.CauseOfDeath attribute) stomach (bkbit.models.donor.Tissue attribute) Stomach_cancer (bkbit.models.donor.CauseOfDeath attribute) strain (bkbit.models.cell_taxonomy.GenomeAssembly attribute) (bkbit.models.genome_annotation.GenomeAssembly attribute) stroke (bkbit.models.donor.ConditionType attribute) structure (bkbit.models.library_generation.TissueSample attribute) Strychnine (bkbit.models.donor.DrugsFound attribute) StudyResult (class in bkbit.models.cell_taxonomy) (class in bkbit.models.donor) (class in bkbit.models.genome_annotation) (class in bkbit.models.library_generation) subarachnoid_hemorrhage (bkbit.models.donor.PerinatalEvent attribute) subdural_hemorrhage (bkbit.models.donor.PerinatalEvent attribute) subject_parcellation_annotation (bkbit.models.anatomical_structure.ParcellationAnnotationTermMap attribute) (bkbit.models.cell_taxonomy.ParcellationAnnotationTermMap attribute) subject_parcellation_term (bkbit.models.anatomical_structure.ParcellationAnnotationTermMap attribute) (bkbit.models.anatomical_structure.ParcellationColorAssignment attribute) (bkbit.models.cell_taxonomy.ParcellationAnnotationTermMap attribute) (bkbit.models.cell_taxonomy.ParcellationColorAssignment attribute) subject_parcellation_terminology (bkbit.models.anatomical_structure.ParcellationColorScheme attribute) (bkbit.models.cell_taxonomy.ParcellationColorScheme attribute) SubjectOfInvestigation (class in bkbit.models.anatomical_structure) (class in bkbit.models.cell_taxonomy) (class in bkbit.models.donor) (class in bkbit.models.genome_annotation) (class in bkbit.models.library_generation) Sudden_infant_death_syndrome (bkbit.models.donor.CauseOfDeath attribute) Sufentanil (bkbit.models.donor.DrugsFound attribute) suicide (bkbit.models.donor.MannerOfDeath attribute) suicide_or_suicide_attempt (bkbit.models.donor.ConditionType attribute) suk (bkbit.models.donor.Language attribute) sun (bkbit.models.donor.Language attribute) superior_to_inferior (bkbit.models.anatomical_structure.ANATOMICALDIRECTION attribute) (bkbit.models.cell_taxonomy.ANATOMICALDIRECTION attribute) surgery (bkbit.models.donor.TissueCollectionState attribute) sus (bkbit.models.donor.Language attribute) suspension_type (bkbit.models.cell_taxonomy.Cell attribute) SuspensionType (class in bkbit.models.cell_taxonomy) sux (bkbit.models.donor.Language attribute) SV (bkbit.models.donor.BirthCountry attribute) swa (bkbit.models.donor.Language attribute) swe (bkbit.models.donor.Language attribute) SX (bkbit.models.donor.BirthCountry attribute) SY (bkbit.models.donor.BirthCountry attribute) syc (bkbit.models.donor.Language attribute) symbol (bkbit.models.anatomical_structure.Gene attribute) (bkbit.models.anatomical_structure.ParcellationTerm attribute) (bkbit.models.cell_taxonomy.Gene attribute) (bkbit.models.cell_taxonomy.GeneAnnotation attribute) (bkbit.models.cell_taxonomy.ParcellationTerm attribute) (bkbit.models.donor.Gene attribute) (bkbit.models.genome_annotation.Gene attribute) (bkbit.models.genome_annotation.GeneAnnotation attribute) (bkbit.models.library_generation.Gene attribute) synonym (bkbit.models.anatomical_structure.Activity attribute) (bkbit.models.anatomical_structure.AnatomicalAnnotationSet attribute) (bkbit.models.anatomical_structure.AnatomicalSpace attribute) (bkbit.models.anatomical_structure.Attribute attribute) (bkbit.models.anatomical_structure.BiologicalEntity attribute) (bkbit.models.anatomical_structure.Dataset attribute) (bkbit.models.anatomical_structure.Gene attribute) (bkbit.models.anatomical_structure.Genome attribute) (bkbit.models.anatomical_structure.ImageDataset attribute) (bkbit.models.anatomical_structure.InformationContentEntity attribute) (bkbit.models.anatomical_structure.MaterialSample attribute) (bkbit.models.anatomical_structure.NamedThing attribute) (bkbit.models.anatomical_structure.OrganismTaxon attribute) (bkbit.models.anatomical_structure.ParcellationAtlas attribute) (bkbit.models.anatomical_structure.ParcellationColorScheme attribute) (bkbit.models.anatomical_structure.ParcellationTerm attribute) (bkbit.models.anatomical_structure.ParcellationTerminology attribute) (bkbit.models.anatomical_structure.ParcellationTermSet attribute) (bkbit.models.anatomical_structure.PhysicalEntity attribute) (bkbit.models.anatomical_structure.Procedure attribute) (bkbit.models.anatomical_structure.VersionedNamedThing attribute) (bkbit.models.cell_taxonomy.Abbreviation attribute) (bkbit.models.cell_taxonomy.Activity attribute) (bkbit.models.cell_taxonomy.AnatomicalAnnotationSet attribute) (bkbit.models.cell_taxonomy.AnatomicalSpace attribute) (bkbit.models.cell_taxonomy.Attribute attribute) (bkbit.models.cell_taxonomy.BiologicalEntity attribute) (bkbit.models.cell_taxonomy.Cell attribute) (bkbit.models.cell_taxonomy.CellTypeSet attribute) (bkbit.models.cell_taxonomy.CellTypeTaxon attribute) (bkbit.models.cell_taxonomy.CellTypeTaxonomy attribute) (bkbit.models.cell_taxonomy.Cluster attribute) (bkbit.models.cell_taxonomy.ClusterSet attribute) (bkbit.models.cell_taxonomy.ColorPalette attribute) (bkbit.models.cell_taxonomy.Dataset attribute) (bkbit.models.cell_taxonomy.DisplayColor attribute) (bkbit.models.cell_taxonomy.Embedding attribute) (bkbit.models.cell_taxonomy.ExpressionMatrix attribute) (bkbit.models.cell_taxonomy.Gene attribute) (bkbit.models.cell_taxonomy.GeneAnnotation attribute) (bkbit.models.cell_taxonomy.Genome attribute) (bkbit.models.cell_taxonomy.GenomeAnnotation attribute) (bkbit.models.cell_taxonomy.GenomeAssembly attribute) (bkbit.models.cell_taxonomy.ImageDataset attribute) (bkbit.models.cell_taxonomy.InformationContentEntity attribute) (bkbit.models.cell_taxonomy.MaterialSample attribute) (bkbit.models.cell_taxonomy.NamedThing attribute) (bkbit.models.cell_taxonomy.OrganismTaxon attribute) (bkbit.models.cell_taxonomy.ParcellationAtlas attribute) (bkbit.models.cell_taxonomy.ParcellationColorScheme attribute) (bkbit.models.cell_taxonomy.ParcellationTerm attribute) (bkbit.models.cell_taxonomy.ParcellationTerminology attribute) (bkbit.models.cell_taxonomy.ParcellationTermSet attribute) (bkbit.models.cell_taxonomy.PhysicalEntity attribute) (bkbit.models.cell_taxonomy.Procedure attribute) (bkbit.models.cell_taxonomy.RelativeFrequencyAnalysisResult attribute) (bkbit.models.cell_taxonomy.StudyResult attribute) (bkbit.models.cell_taxonomy.VersionedNamedThing attribute) (bkbit.models.donor.Activity attribute) (bkbit.models.donor.Attribute attribute) (bkbit.models.donor.BiologicalEntity attribute) (bkbit.models.donor.Dataset attribute) (bkbit.models.donor.Donor attribute) (bkbit.models.donor.Gene attribute) (bkbit.models.donor.Genome attribute) (bkbit.models.donor.InformationContentEntity attribute) (bkbit.models.donor.MaterialSample attribute) (bkbit.models.donor.NamedThing attribute) (bkbit.models.donor.OrganismTaxon attribute) (bkbit.models.donor.PhysicalEntity attribute) (bkbit.models.donor.Procedure attribute) (bkbit.models.donor.RelativeFrequencyAnalysisResult attribute) (bkbit.models.donor.StudyResult attribute) (bkbit.models.genome_annotation.Activity attribute) (bkbit.models.genome_annotation.Attribute attribute) (bkbit.models.genome_annotation.BiologicalEntity attribute) (bkbit.models.genome_annotation.Dataset attribute) (bkbit.models.genome_annotation.Gene attribute) (bkbit.models.genome_annotation.GeneAnnotation attribute) (bkbit.models.genome_annotation.Genome attribute) (bkbit.models.genome_annotation.GenomeAnnotation attribute) (bkbit.models.genome_annotation.GenomeAssembly attribute) (bkbit.models.genome_annotation.InformationContentEntity attribute) (bkbit.models.genome_annotation.MaterialSample attribute) (bkbit.models.genome_annotation.NamedThing attribute) (bkbit.models.genome_annotation.OrganismTaxon attribute) (bkbit.models.genome_annotation.PhysicalEntity attribute) (bkbit.models.genome_annotation.Procedure attribute) (bkbit.models.genome_annotation.RelativeFrequencyAnalysisResult attribute) (bkbit.models.genome_annotation.StudyResult attribute) (bkbit.models.genome_annotation.VersionedNamedThing attribute) (bkbit.models.library_generation.Activity attribute) (bkbit.models.library_generation.AmplifiedCdna attribute) (bkbit.models.library_generation.Attribute attribute) (bkbit.models.library_generation.BarcodedCellSample attribute) (bkbit.models.library_generation.BiologicalEntity attribute) (bkbit.models.library_generation.BrainSlab attribute) (bkbit.models.library_generation.CdnaAmplification attribute) (bkbit.models.library_generation.CellBarcoding attribute) (bkbit.models.library_generation.CellDissociation attribute) (bkbit.models.library_generation.CellEnrichment attribute) (bkbit.models.library_generation.Dataset attribute) (bkbit.models.library_generation.DigitalAsset attribute) (bkbit.models.library_generation.DissectionRoiDelineation attribute) (bkbit.models.library_generation.DissociatedCellSample attribute) (bkbit.models.library_generation.Donor attribute) (bkbit.models.library_generation.EnrichedCellSample attribute) (bkbit.models.library_generation.EnrichedCellSampleSplitting attribute) (bkbit.models.library_generation.Gene attribute) (bkbit.models.library_generation.Genome attribute) (bkbit.models.library_generation.InformationContentEntity attribute) (bkbit.models.library_generation.Library attribute) (bkbit.models.library_generation.LibraryAliquot attribute) (bkbit.models.library_generation.LibraryConstruction attribute) (bkbit.models.library_generation.LibraryPool attribute) (bkbit.models.library_generation.LibraryPooling attribute) (bkbit.models.library_generation.MaterialSample attribute) (bkbit.models.library_generation.NamedThing attribute) (bkbit.models.library_generation.OrganismTaxon attribute) (bkbit.models.library_generation.PhysicalEntity attribute) (bkbit.models.library_generation.Procedure attribute) (bkbit.models.library_generation.RelativeFrequencyAnalysisResult attribute) (bkbit.models.library_generation.StudyResult attribute) (bkbit.models.library_generation.TissueDissection attribute) (bkbit.models.library_generation.TissueSample attribute) (bkbit.models.library_generation.VersionedNamedThing attribute) Syphilis (bkbit.models.donor.CauseOfDeath attribute) syr (bkbit.models.donor.Language attribute) systemic_tissue (bkbit.models.donor.Tissue attribute) SZ (bkbit.models.donor.BirthCountry attribute)

T

Tadalafil (bkbit.models.donor.DrugsFound attribute) tag_local_name (bkbit.models.library_generation.BarcodedCellSample attribute) tah (bkbit.models.donor.Language attribute) tai (bkbit.models.donor.Language attribute) tam (bkbit.models.donor.Language attribute) Tapentadol (bkbit.models.donor.DrugsFound attribute) tat (bkbit.models.donor.Language attribute) taxon (bkbit.data_translators.ait_taxonomy_translator.GeneIndex attribute) taxonomic_level (bkbit.models.cell_taxonomy.CellTypeSetType attribute) TaxonomicRank (class in bkbit.models.anatomical_structure) (class in bkbit.models.cell_taxonomy) (class in bkbit.models.donor) (class in bkbit.models.genome_annotation) (class in bkbit.models.library_generation) TBD (bkbit.models.donor.Repository attribute) TC (bkbit.models.donor.BirthCountry attribute) TD (bkbit.models.donor.BirthCountry attribute) teammate (bkbit.models.donor.InformantRelationship attribute) technique (bkbit.models.library_generation.BarcodedCellSample attribute) (bkbit.models.library_generation.Library attribute) tel (bkbit.models.donor.Language attribute) tem (bkbit.models.donor.Language attribute) Temazepam (bkbit.models.donor.DrugsFound attribute) temporalis_muscle (bkbit.models.donor.Tissue attribute) ter (bkbit.models.donor.Language attribute) term (bkbit.models.cell_taxonomy.Abbreviation attribute) testicle (bkbit.models.donor.Tissue attribute) Testicular_cancer (bkbit.models.donor.CauseOfDeath attribute) TestName (class in bkbit.models.donor) tet (bkbit.models.donor.Language attribute) Tetanus (bkbit.models.donor.CauseOfDeath attribute) Tetrahydrozoline (bkbit.models.donor.DrugsFound attribute) TF (bkbit.models.donor.BirthCountry attribute) TG (bkbit.models.donor.BirthCountry attribute) tgk (bkbit.models.donor.Language attribute) tgl (bkbit.models.donor.Language attribute) TH (bkbit.models.donor.BirthCountry attribute) tha (bkbit.models.donor.Language attribute) themself (bkbit.models.donor.InformantRelationship attribute) Theobromine (bkbit.models.donor.DrugsFound attribute) Theophylline (bkbit.models.donor.DrugsFound attribute) ThingWithTaxon (class in bkbit.models.anatomical_structure) (class in bkbit.models.cell_taxonomy) (class in bkbit.models.donor) (class in bkbit.models.genome_annotation) (class in bkbit.models.library_generation) Thioridazine (bkbit.models.donor.DrugsFound attribute) Thiothixene (bkbit.models.donor.DrugsFound attribute) thoracic_spinal_cord (bkbit.models.donor.Tissue attribute) thymus (bkbit.models.donor.Tissue attribute) thyroid (bkbit.models.donor.Tissue attribute) Thyroid_cancer (bkbit.models.donor.CauseOfDeath attribute) tib_LEFT_PARENTHESISBRIGHT_PARENTHESIS (bkbit.models.donor.Language attribute) Ticlopidine (bkbit.models.donor.DrugsFound attribute) tig (bkbit.models.donor.Language attribute) tir (bkbit.models.donor.Language attribute) tissue (bkbit.models.donor.Tissue attribute) Tissue (class in bkbit.models.donor) tissue_other (bkbit.models.donor.Tissue attribute) tissue_type (bkbit.models.donor.Donor attribute) TissueCollectionState (class in bkbit.models.donor) TissueDissection (class in bkbit.models.library_generation) TissueSample (class in bkbit.models.library_generation) TissueSource (class in bkbit.models.donor) title (bkbit.models.cell_taxonomy.CellTypeTaxonomy attribute) tiv (bkbit.models.donor.Language attribute) TJ (bkbit.models.donor.BirthCountry attribute) TK (bkbit.models.donor.BirthCountry attribute) tkl (bkbit.models.donor.Language attribute) TL (bkbit.models.donor.BirthCountry attribute) tlh (bkbit.models.donor.Language attribute) tli (bkbit.models.donor.Language attribute) TM (bkbit.models.donor.BirthCountry attribute) tmh (bkbit.models.donor.Language attribute) TN (bkbit.models.donor.BirthCountry attribute) TO (bkbit.models.donor.BirthCountry attribute) to_dict() (bkbit.data_translators.ait_taxonomy_translator.Report method) to_jsonld() (in module bkbit.data_translators.ait_taxonomy_translator) tog (bkbit.models.donor.Language attribute) ton (bkbit.models.donor.Language attribute) tongue (bkbit.models.donor.Tissue attribute) tonsil (bkbit.models.donor.Tissue attribute) Topiramate (bkbit.models.donor.DrugsFound attribute) Topiramate_Breakdown_Product (bkbit.models.donor.DrugsFound attribute) tourette_syndrome (bkbit.models.donor.ConditionType attribute) tox_screening_data_available (bkbit.models.donor.Donor attribute) tpi (bkbit.models.donor.Language attribute) TR (bkbit.models.donor.BirthCountry attribute) trachea (bkbit.models.donor.Tissue attribute) Trachea_bronchus_lung_cancers (bkbit.models.donor.CauseOfDeath attribute) Trachoma (bkbit.models.donor.CauseOfDeath attribute) Tramadol (bkbit.models.donor.DrugsFound attribute) Tramadol_Metabolite (bkbit.models.donor.DrugsFound attribute) trans_3_Methylfentanyl (bkbit.models.donor.DrugsFound attribute) transgender_female (bkbit.models.donor.Gender attribute) transgender_male (bkbit.models.donor.Gender attribute) traumatic_type (bkbit.models.donor.Donor attribute) TraumaticType (class in bkbit.models.donor) Trazodone (bkbit.models.donor.DrugsFound attribute) Triazolam (bkbit.models.donor.DrugsFound attribute) Trichuriasis (bkbit.models.donor.CauseOfDeath attribute) Trifluoperazine (bkbit.models.donor.DrugsFound attribute) trim_model() (bkbit.model_editors.linkml_trimmer.YamlTrimmer method) Trimethoprim (bkbit.models.donor.DrugsFound attribute) Trimipramine (bkbit.models.donor.DrugsFound attribute) Triprolidine (bkbit.models.donor.DrugsFound attribute) Tropical_cluster_diseases (bkbit.models.donor.CauseOfDeath attribute) Trypanosomiasis (bkbit.models.donor.CauseOfDeath attribute) tsi (bkbit.models.donor.Language attribute) tsn (bkbit.models.donor.Language attribute) tso (bkbit.models.donor.Language attribute) TT (bkbit.models.donor.BirthCountry attribute) tube_barcode (bkbit.models.library_generation.LibraryPool attribute) Tuberculosis (bkbit.models.donor.CauseOfDeath attribute) tuk (bkbit.models.donor.Language attribute) tum (bkbit.models.donor.Language attribute) tup (bkbit.models.donor.Language attribute) tur (bkbit.models.donor.Language attribute) tut (bkbit.models.donor.Language attribute) TV (bkbit.models.donor.BirthCountry attribute) tvl (bkbit.models.donor.Language attribute) TW (bkbit.models.donor.BirthCountry attribute) twi (bkbit.models.donor.Language attribute) type (bkbit.models.anatomical_structure.Activity attribute) (bkbit.models.anatomical_structure.AnatomicalAnnotationSet attribute) (bkbit.models.anatomical_structure.AnatomicalSpace attribute) (bkbit.models.anatomical_structure.Attribute attribute) (bkbit.models.anatomical_structure.BiologicalEntity attribute) (bkbit.models.anatomical_structure.Checksum attribute) (bkbit.models.anatomical_structure.Dataset attribute) (bkbit.models.anatomical_structure.Entity attribute) (bkbit.models.anatomical_structure.Gene attribute) (bkbit.models.anatomical_structure.Genome attribute) (bkbit.models.anatomical_structure.ImageDataset attribute) (bkbit.models.anatomical_structure.InformationContentEntity attribute) (bkbit.models.anatomical_structure.MaterialSample attribute) (bkbit.models.anatomical_structure.NamedThing attribute) (bkbit.models.anatomical_structure.OrganismTaxon attribute) (bkbit.models.anatomical_structure.ParcellationAtlas attribute) (bkbit.models.anatomical_structure.ParcellationColorScheme attribute) (bkbit.models.anatomical_structure.ParcellationTerm attribute) (bkbit.models.anatomical_structure.ParcellationTerminology attribute) (bkbit.models.anatomical_structure.ParcellationTermSet attribute) (bkbit.models.anatomical_structure.PhysicalEntity attribute) (bkbit.models.anatomical_structure.Procedure attribute) (bkbit.models.anatomical_structure.VersionedNamedThing attribute) (bkbit.models.cell_taxonomy.Abbreviation attribute) (bkbit.models.cell_taxonomy.Activity attribute) (bkbit.models.cell_taxonomy.AnatomicalAnnotationSet attribute) (bkbit.models.cell_taxonomy.AnatomicalSpace attribute) (bkbit.models.cell_taxonomy.Attribute attribute) (bkbit.models.cell_taxonomy.BiologicalEntity attribute) (bkbit.models.cell_taxonomy.Cell attribute) (bkbit.models.cell_taxonomy.CellTypeSet attribute) (bkbit.models.cell_taxonomy.CellTypeTaxon attribute) (bkbit.models.cell_taxonomy.CellTypeTaxonomy attribute) (bkbit.models.cell_taxonomy.Checksum attribute) (bkbit.models.cell_taxonomy.Cluster attribute) (bkbit.models.cell_taxonomy.ClusterSet attribute) (bkbit.models.cell_taxonomy.ColorPalette attribute) (bkbit.models.cell_taxonomy.Dataset attribute) (bkbit.models.cell_taxonomy.DisplayColor attribute) (bkbit.models.cell_taxonomy.Embedding attribute) (bkbit.models.cell_taxonomy.Entity attribute) (bkbit.models.cell_taxonomy.ExpressionMatrix attribute) (bkbit.models.cell_taxonomy.Gene attribute) (bkbit.models.cell_taxonomy.GeneAnnotation attribute) (bkbit.models.cell_taxonomy.Genome attribute) (bkbit.models.cell_taxonomy.GenomeAnnotation attribute) (bkbit.models.cell_taxonomy.GenomeAssembly attribute) (bkbit.models.cell_taxonomy.ImageDataset attribute) (bkbit.models.cell_taxonomy.InformationContentEntity attribute) (bkbit.models.cell_taxonomy.MaterialSample attribute) (bkbit.models.cell_taxonomy.NamedThing attribute) (bkbit.models.cell_taxonomy.OrganismTaxon attribute) (bkbit.models.cell_taxonomy.ParcellationAtlas attribute) (bkbit.models.cell_taxonomy.ParcellationColorScheme attribute) (bkbit.models.cell_taxonomy.ParcellationTerm attribute) (bkbit.models.cell_taxonomy.ParcellationTerminology attribute) (bkbit.models.cell_taxonomy.ParcellationTermSet attribute) (bkbit.models.cell_taxonomy.PhysicalEntity attribute) (bkbit.models.cell_taxonomy.Procedure attribute) (bkbit.models.cell_taxonomy.RelativeFrequencyAnalysisResult attribute) (bkbit.models.cell_taxonomy.StudyResult attribute) (bkbit.models.cell_taxonomy.VersionedNamedThing attribute) (bkbit.models.donor.Activity attribute) (bkbit.models.donor.Attribute attribute) (bkbit.models.donor.BiologicalEntity attribute) (bkbit.models.donor.Dataset attribute) (bkbit.models.donor.Donor attribute) (bkbit.models.donor.Entity attribute) (bkbit.models.donor.Gene attribute) (bkbit.models.donor.Genome attribute) (bkbit.models.donor.InformationContentEntity attribute) (bkbit.models.donor.MaterialSample attribute) (bkbit.models.donor.NamedThing attribute) (bkbit.models.donor.OrganismTaxon attribute) (bkbit.models.donor.PhysicalEntity attribute) (bkbit.models.donor.Procedure attribute) (bkbit.models.donor.RelativeFrequencyAnalysisResult attribute) (bkbit.models.donor.StudyResult attribute) (bkbit.models.genome_annotation.Activity attribute) (bkbit.models.genome_annotation.Attribute attribute) (bkbit.models.genome_annotation.BiologicalEntity attribute) (bkbit.models.genome_annotation.Checksum attribute) (bkbit.models.genome_annotation.Dataset attribute) (bkbit.models.genome_annotation.Entity attribute) (bkbit.models.genome_annotation.Gene attribute) (bkbit.models.genome_annotation.GeneAnnotation attribute) (bkbit.models.genome_annotation.Genome attribute) (bkbit.models.genome_annotation.GenomeAnnotation attribute) (bkbit.models.genome_annotation.GenomeAssembly attribute) (bkbit.models.genome_annotation.InformationContentEntity attribute) (bkbit.models.genome_annotation.MaterialSample attribute) (bkbit.models.genome_annotation.NamedThing attribute) (bkbit.models.genome_annotation.OrganismTaxon attribute) (bkbit.models.genome_annotation.PhysicalEntity attribute) (bkbit.models.genome_annotation.Procedure attribute) (bkbit.models.genome_annotation.RelativeFrequencyAnalysisResult attribute) (bkbit.models.genome_annotation.StudyResult attribute) (bkbit.models.genome_annotation.VersionedNamedThing attribute) (bkbit.models.library_generation.Activity attribute) (bkbit.models.library_generation.AmplifiedCdna attribute) (bkbit.models.library_generation.Attribute attribute) (bkbit.models.library_generation.BarcodedCellSample attribute) (bkbit.models.library_generation.BiologicalEntity attribute) (bkbit.models.library_generation.BrainSlab attribute) (bkbit.models.library_generation.CdnaAmplification attribute) (bkbit.models.library_generation.CellBarcoding attribute) (bkbit.models.library_generation.CellDissociation attribute) (bkbit.models.library_generation.CellEnrichment attribute) (bkbit.models.library_generation.Checksum attribute) (bkbit.models.library_generation.Dataset attribute) (bkbit.models.library_generation.DigitalAsset attribute) (bkbit.models.library_generation.DissectionRoiDelineation attribute) (bkbit.models.library_generation.DissectionRoiPolygon attribute) (bkbit.models.library_generation.DissociatedCellSample attribute) (bkbit.models.library_generation.Donor attribute) (bkbit.models.library_generation.EnrichedCellSample attribute) (bkbit.models.library_generation.EnrichedCellSampleSplitting attribute) (bkbit.models.library_generation.Entity attribute) (bkbit.models.library_generation.Gene attribute) (bkbit.models.library_generation.Genome attribute) (bkbit.models.library_generation.InformationContentEntity attribute) (bkbit.models.library_generation.Library attribute) (bkbit.models.library_generation.LibraryAliquot attribute) (bkbit.models.library_generation.LibraryConstruction attribute) (bkbit.models.library_generation.LibraryPool attribute) (bkbit.models.library_generation.LibraryPooling attribute) (bkbit.models.library_generation.MaterialSample attribute) (bkbit.models.library_generation.NamedThing attribute) (bkbit.models.library_generation.OrganismTaxon attribute) (bkbit.models.library_generation.PhysicalEntity attribute) (bkbit.models.library_generation.Procedure attribute) (bkbit.models.library_generation.RelativeFrequencyAnalysisResult attribute) (bkbit.models.library_generation.StudyResult attribute) (bkbit.models.library_generation.TissueDissection attribute) (bkbit.models.library_generation.TissueSample attribute) (bkbit.models.library_generation.VersionedNamedThing attribute)

tyv (bkbit.models.donor.Language attribute) TZ (bkbit.models.donor.BirthCountry attribute)

U

U_47700 (bkbit.models.donor.DrugsFound attribute) UA (bkbit.models.donor.BirthCountry attribute) UCLA (bkbit.models.donor.Repository attribute) udm (bkbit.models.donor.Language attribute) UG (bkbit.models.donor.BirthCountry attribute) uga (bkbit.models.donor.Language attribute) uig (bkbit.models.donor.Language attribute) ukr (bkbit.models.donor.Language attribute) UM (bkbit.models.donor.BirthCountry attribute) umb (bkbit.models.donor.Language attribute) umbilical_cord (bkbit.models.donor.Tissue attribute) und (bkbit.models.donor.Language attribute) Under_DOLLAR_SIGN15000 (bkbit.models.donor.IncomeRange attribute) Unintentional_injuries (bkbit.models.donor.CauseOfDeath attribute) Unipolar_depressive_disorders (bkbit.models.donor.CauseOfDeath attribute) unit (bkbit.models.anatomical_structure.ImageDataset attribute) (bkbit.models.cell_taxonomy.ImageDataset attribute) Unknown (bkbit.models.donor.BrainTissueWeightType attribute) (bkbit.models.donor.Ethnicity attribute) unknown (bkbit.models.donor.Gender attribute) (bkbit.models.donor.Hemisphere attribute) Unknown (bkbit.models.donor.IncomeRange attribute) (bkbit.models.donor.Race attribute) unknown (bkbit.models.donor.Sex attribute) (bkbit.models.donor.SexualOrientation attribute) (bkbit.models.donor.TissueSource attribute)

unknown_if_subject_is_deceased_or_not (bkbit.models.donor.MannerOfDeath attribute) unpopulated (bkbit.data_translators.ait_taxonomy_translator.Report attribute) Upper_respiratory_infections (bkbit.models.donor.CauseOfDeath attribute) urd (bkbit.models.donor.Language attribute) ureter (bkbit.models.donor.Tissue attribute) urinary_bladder (bkbit.models.donor.Tissue attribute) urine (bkbit.models.donor.Tissue attribute) US (bkbit.models.donor.BirthCountry attribute) used (bkbit.models.cell_taxonomy.ProvActivity attribute) (bkbit.models.donor.ProvActivity attribute) (bkbit.models.library_generation.CdnaAmplification attribute) (bkbit.models.library_generation.CellBarcoding attribute) (bkbit.models.library_generation.CellDissociation attribute) (bkbit.models.library_generation.CellEnrichment attribute) (bkbit.models.library_generation.DissectionRoiDelineation attribute) (bkbit.models.library_generation.EnrichedCellSampleSplitting attribute) (bkbit.models.library_generation.LibraryConstruction attribute) (bkbit.models.library_generation.LibraryPooling attribute) (bkbit.models.library_generation.ProvActivity attribute) (bkbit.models.library_generation.TissueDissection attribute) uterus (bkbit.models.donor.Tissue attribute) UY (bkbit.models.donor.BirthCountry attribute) UZ (bkbit.models.donor.BirthCountry attribute) uzb (bkbit.models.donor.Language attribute)

V

VA (bkbit.models.donor.BirthCountry attribute) vai (bkbit.models.donor.Language attribute) Valerylfentanyl (bkbit.models.donor.DrugsFound attribute) value (bkbit.models.anatomical_structure.Checksum attribute) (bkbit.models.cell_taxonomy.Checksum attribute) (bkbit.models.genome_annotation.Checksum attribute) (bkbit.models.library_generation.Checksum attribute) value_validators() (in module bkbit.data_translators.ait_taxonomy_translator) Vardenafil (bkbit.models.donor.DrugsFound attribute) vascular_type (bkbit.models.donor.Donor attribute) VascularType (class in bkbit.models.donor) VC (bkbit.models.donor.BirthCountry attribute) VE (bkbit.models.donor.BirthCountry attribute) vein (bkbit.models.donor.Tissue attribute) ven (bkbit.models.donor.Language attribute) Venlafaxine (bkbit.models.donor.DrugsFound attribute) Venlafaxine_Metabolite (bkbit.models.donor.DrugsFound attribute) Verapamil (bkbit.models.donor.DrugsFound attribute) version (bkbit.models.anatomical_structure.AnatomicalAnnotationSet attribute) (bkbit.models.anatomical_structure.AnatomicalSpace attribute) (bkbit.models.anatomical_structure.ImageDataset attribute) (bkbit.models.anatomical_structure.ParcellationAtlas attribute) (bkbit.models.anatomical_structure.ParcellationColorScheme attribute) (bkbit.models.anatomical_structure.ParcellationTerm attribute) (bkbit.models.anatomical_structure.ParcellationTerminology attribute) (bkbit.models.anatomical_structure.ParcellationTermSet attribute) (bkbit.models.anatomical_structure.VersionedNamedThing attribute) (bkbit.models.cell_taxonomy.AnatomicalAnnotationSet attribute) (bkbit.models.cell_taxonomy.AnatomicalSpace attribute) (bkbit.models.cell_taxonomy.GenomeAnnotation attribute) (bkbit.models.cell_taxonomy.GenomeAssembly attribute) (bkbit.models.cell_taxonomy.ImageDataset attribute) (bkbit.models.cell_taxonomy.ParcellationAtlas attribute) (bkbit.models.cell_taxonomy.ParcellationColorScheme attribute) (bkbit.models.cell_taxonomy.ParcellationTerm attribute) (bkbit.models.cell_taxonomy.ParcellationTerminology attribute) (bkbit.models.cell_taxonomy.ParcellationTermSet attribute) (bkbit.models.cell_taxonomy.VersionedNamedThing attribute) (bkbit.models.genome_annotation.GenomeAnnotation attribute) (bkbit.models.genome_annotation.GenomeAssembly attribute) (bkbit.models.genome_annotation.VersionedNamedThing attribute) (bkbit.models.library_generation.VersionedNamedThing attribute)

VersionedNamedThing (class in bkbit.models.anatomical_structure) (class in bkbit.models.cell_taxonomy) (class in bkbit.models.genome_annotation) (class in bkbit.models.library_generation) VG (bkbit.models.donor.BirthCountry attribute) VI (bkbit.models.donor.BirthCountry attribute) vie (bkbit.models.donor.Language attribute) Violence (bkbit.models.donor.CauseOfDeath attribute) Vision_disorders_age_related (bkbit.models.donor.CauseOfDeath attribute) Vitamin_A_deficiency (bkbit.models.donor.CauseOfDeath attribute) vitreous (bkbit.models.donor.Tissue attribute) vitreous_humor (bkbit.models.donor.Tissue attribute) VN (bkbit.models.donor.BirthCountry attribute) vol (bkbit.models.donor.Language attribute) vot (bkbit.models.donor.Language attribute) voxel_count (bkbit.models.anatomical_structure.ParcellationAnnotation attribute) (bkbit.models.cell_taxonomy.ParcellationAnnotation attribute) VU (bkbit.models.donor.BirthCountry attribute)

W

wak (bkbit.models.donor.Language attribute) wal (bkbit.models.donor.Language attribute) War (bkbit.models.donor.CauseOfDeath attribute) war (bkbit.models.donor.Language attribute) Warfarin (bkbit.models.donor.DrugsFound attribute) was (bkbit.models.donor.Language attribute) was_derived_from (bkbit.models.cell_taxonomy.Abbreviation attribute) (bkbit.models.cell_taxonomy.Cell attribute) (bkbit.models.cell_taxonomy.CellTypeSet attribute) (bkbit.models.cell_taxonomy.CellTypeTaxon attribute) (bkbit.models.cell_taxonomy.CellTypeTaxonomy attribute) (bkbit.models.cell_taxonomy.Cluster attribute) (bkbit.models.cell_taxonomy.ClusterSet attribute) (bkbit.models.cell_taxonomy.ColorPalette attribute) (bkbit.models.cell_taxonomy.DisplayColor attribute) (bkbit.models.cell_taxonomy.Embedding attribute) (bkbit.models.cell_taxonomy.ExpressionMatrix attribute) (bkbit.models.cell_taxonomy.ProvEntity attribute) (bkbit.models.donor.Donor attribute) (bkbit.models.donor.ProvEntity attribute) (bkbit.models.library_generation.AmplifiedCdna attribute) (bkbit.models.library_generation.BarcodedCellSample attribute) (bkbit.models.library_generation.BrainSlab attribute) (bkbit.models.library_generation.DigitalAsset attribute) (bkbit.models.library_generation.DissectionRoiPolygon attribute) (bkbit.models.library_generation.DissociatedCellSample attribute) (bkbit.models.library_generation.Donor attribute) (bkbit.models.library_generation.EnrichedCellSample attribute) (bkbit.models.library_generation.Library attribute) (bkbit.models.library_generation.LibraryAliquot attribute) (bkbit.models.library_generation.LibraryPool attribute) (bkbit.models.library_generation.ProvEntity attribute) (bkbit.models.library_generation.TissueSample attribute) was_generated_by (bkbit.models.cell_taxonomy.Abbreviation attribute) (bkbit.models.cell_taxonomy.Cell attribute) (bkbit.models.cell_taxonomy.CellTypeSet attribute) (bkbit.models.cell_taxonomy.CellTypeTaxon attribute) (bkbit.models.cell_taxonomy.CellTypeTaxonomy attribute) (bkbit.models.cell_taxonomy.Cluster attribute) (bkbit.models.cell_taxonomy.ClusterSet attribute) (bkbit.models.cell_taxonomy.ColorPalette attribute) (bkbit.models.cell_taxonomy.DisplayColor attribute) (bkbit.models.cell_taxonomy.Embedding attribute) (bkbit.models.cell_taxonomy.ExpressionMatrix attribute) (bkbit.models.cell_taxonomy.ProvEntity attribute) (bkbit.models.donor.Donor attribute) (bkbit.models.donor.ProvEntity attribute) (bkbit.models.library_generation.AmplifiedCdna attribute) (bkbit.models.library_generation.BarcodedCellSample attribute) (bkbit.models.library_generation.BrainSlab attribute) (bkbit.models.library_generation.DigitalAsset attribute) (bkbit.models.library_generation.DissectionRoiPolygon attribute) (bkbit.models.library_generation.DissociatedCellSample attribute) (bkbit.models.library_generation.Donor attribute) (bkbit.models.library_generation.EnrichedCellSample attribute) (bkbit.models.library_generation.Library attribute) (bkbit.models.library_generation.LibraryAliquot attribute) (bkbit.models.library_generation.LibraryPool attribute) (bkbit.models.library_generation.ProvEntity attribute) (bkbit.models.library_generation.TissueSample attribute)

was_guided_by (bkbit.models.library_generation.TissueDissection attribute) weighed_type (bkbit.models.donor.Donor attribute) wel_LEFT_PARENTHESISBRIGHT_PARENTHESIS (bkbit.models.donor.Language attribute) wen (bkbit.models.donor.Language attribute) WF (bkbit.models.donor.BirthCountry attribute) White (bkbit.models.donor.Race attribute) whole_blood (bkbit.models.donor.Tissue attribute) (bkbit.models.donor.TissueSource attribute) whole_brain_MERFISH (bkbit.models.library_generation.LibraryTechnique attribute) widowed (bkbit.models.donor.MaritalStatus attribute) wln (bkbit.models.donor.Language attribute) wol (bkbit.models.donor.Language attribute) WS (bkbit.models.donor.BirthCountry attribute)

X

x_direction (bkbit.models.anatomical_structure.ImageDataset attribute) (bkbit.models.cell_taxonomy.ImageDataset attribute) x_resolution (bkbit.models.anatomical_structure.ImageDataset attribute) (bkbit.models.cell_taxonomy.ImageDataset attribute) x_size (bkbit.models.anatomical_structure.ImageDataset attribute) (bkbit.models.cell_taxonomy.ImageDataset attribute) xal (bkbit.models.donor.Language attribute) xho (bkbit.models.donor.Language attribute) xref (bkbit.models.anatomical_structure.Activity attribute) (bkbit.models.anatomical_structure.AnatomicalAnnotationSet attribute) (bkbit.models.anatomical_structure.AnatomicalSpace attribute) (bkbit.models.anatomical_structure.Attribute attribute) (bkbit.models.anatomical_structure.BiologicalEntity attribute) (bkbit.models.anatomical_structure.Dataset attribute) (bkbit.models.anatomical_structure.Gene attribute) (bkbit.models.anatomical_structure.Genome attribute) (bkbit.models.anatomical_structure.ImageDataset attribute) (bkbit.models.anatomical_structure.InformationContentEntity attribute) (bkbit.models.anatomical_structure.MaterialSample attribute) (bkbit.models.anatomical_structure.NamedThing attribute) (bkbit.models.anatomical_structure.OrganismTaxon attribute) (bkbit.models.anatomical_structure.ParcellationAtlas attribute) (bkbit.models.anatomical_structure.ParcellationColorScheme attribute) (bkbit.models.anatomical_structure.ParcellationTerm attribute) (bkbit.models.anatomical_structure.ParcellationTerminology attribute) (bkbit.models.anatomical_structure.ParcellationTermSet attribute) (bkbit.models.anatomical_structure.PhysicalEntity attribute) (bkbit.models.anatomical_structure.Procedure attribute) (bkbit.models.anatomical_structure.VersionedNamedThing attribute) (bkbit.models.cell_taxonomy.Abbreviation attribute) (bkbit.models.cell_taxonomy.Activity attribute) (bkbit.models.cell_taxonomy.AnatomicalAnnotationSet attribute) (bkbit.models.cell_taxonomy.AnatomicalSpace attribute) (bkbit.models.cell_taxonomy.Attribute attribute) (bkbit.models.cell_taxonomy.BiologicalEntity attribute) (bkbit.models.cell_taxonomy.Cell attribute) (bkbit.models.cell_taxonomy.CellTypeSet attribute) (bkbit.models.cell_taxonomy.CellTypeTaxon attribute) (bkbit.models.cell_taxonomy.CellTypeTaxonomy attribute) (bkbit.models.cell_taxonomy.Cluster attribute) (bkbit.models.cell_taxonomy.ClusterSet attribute) (bkbit.models.cell_taxonomy.ColorPalette attribute) (bkbit.models.cell_taxonomy.Dataset attribute) (bkbit.models.cell_taxonomy.DisplayColor attribute) (bkbit.models.cell_taxonomy.Embedding attribute) (bkbit.models.cell_taxonomy.ExpressionMatrix attribute) (bkbit.models.cell_taxonomy.Gene attribute) (bkbit.models.cell_taxonomy.GeneAnnotation attribute) (bkbit.models.cell_taxonomy.Genome attribute) (bkbit.models.cell_taxonomy.GenomeAnnotation attribute) (bkbit.models.cell_taxonomy.GenomeAssembly attribute) (bkbit.models.cell_taxonomy.ImageDataset attribute) (bkbit.models.cell_taxonomy.InformationContentEntity attribute) (bkbit.models.cell_taxonomy.MaterialSample attribute) (bkbit.models.cell_taxonomy.NamedThing attribute) (bkbit.models.cell_taxonomy.OrganismTaxon attribute) (bkbit.models.cell_taxonomy.ParcellationAtlas attribute) (bkbit.models.cell_taxonomy.ParcellationColorScheme attribute) (bkbit.models.cell_taxonomy.ParcellationTerm attribute) (bkbit.models.cell_taxonomy.ParcellationTerminology attribute) (bkbit.models.cell_taxonomy.ParcellationTermSet attribute) (bkbit.models.cell_taxonomy.PhysicalEntity attribute) (bkbit.models.cell_taxonomy.Procedure attribute) (bkbit.models.cell_taxonomy.RelativeFrequencyAnalysisResult attribute) (bkbit.models.cell_taxonomy.StudyResult attribute) (bkbit.models.cell_taxonomy.VersionedNamedThing attribute) (bkbit.models.donor.Activity attribute) (bkbit.models.donor.Attribute attribute) (bkbit.models.donor.BiologicalEntity attribute) (bkbit.models.donor.Dataset attribute) (bkbit.models.donor.Donor attribute) (bkbit.models.donor.Gene attribute) (bkbit.models.donor.Genome attribute) (bkbit.models.donor.InformationContentEntity attribute) (bkbit.models.donor.MaterialSample attribute) (bkbit.models.donor.NamedThing attribute) (bkbit.models.donor.OrganismTaxon attribute) (bkbit.models.donor.PhysicalEntity attribute) (bkbit.models.donor.Procedure attribute) (bkbit.models.donor.RelativeFrequencyAnalysisResult attribute) (bkbit.models.donor.StudyResult attribute) (bkbit.models.genome_annotation.Activity attribute) (bkbit.models.genome_annotation.Attribute attribute) (bkbit.models.genome_annotation.BiologicalEntity attribute) (bkbit.models.genome_annotation.Dataset attribute) (bkbit.models.genome_annotation.Gene attribute) (bkbit.models.genome_annotation.GeneAnnotation attribute) (bkbit.models.genome_annotation.Genome attribute) (bkbit.models.genome_annotation.GenomeAnnotation attribute) (bkbit.models.genome_annotation.GenomeAssembly attribute) (bkbit.models.genome_annotation.InformationContentEntity attribute) (bkbit.models.genome_annotation.MaterialSample attribute) (bkbit.models.genome_annotation.NamedThing attribute) (bkbit.models.genome_annotation.OrganismTaxon attribute) (bkbit.models.genome_annotation.PhysicalEntity attribute) (bkbit.models.genome_annotation.Procedure attribute) (bkbit.models.genome_annotation.RelativeFrequencyAnalysisResult attribute) (bkbit.models.genome_annotation.StudyResult attribute) (bkbit.models.genome_annotation.VersionedNamedThing attribute) (bkbit.models.library_generation.Activity attribute) (bkbit.models.library_generation.AmplifiedCdna attribute) (bkbit.models.library_generation.Attribute attribute) (bkbit.models.library_generation.BarcodedCellSample attribute) (bkbit.models.library_generation.BiologicalEntity attribute) (bkbit.models.library_generation.BrainSlab attribute) (bkbit.models.library_generation.CdnaAmplification attribute) (bkbit.models.library_generation.CellBarcoding attribute) (bkbit.models.library_generation.CellDissociation attribute) (bkbit.models.library_generation.CellEnrichment attribute) (bkbit.models.library_generation.Dataset attribute) (bkbit.models.library_generation.DigitalAsset attribute) (bkbit.models.library_generation.DissectionRoiDelineation attribute) (bkbit.models.library_generation.DissectionRoiPolygon attribute) (bkbit.models.library_generation.DissociatedCellSample attribute) (bkbit.models.library_generation.Donor attribute) (bkbit.models.library_generation.EnrichedCellSample attribute) (bkbit.models.library_generation.EnrichedCellSampleSplitting attribute) (bkbit.models.library_generation.Gene attribute) (bkbit.models.library_generation.Genome attribute) (bkbit.models.library_generation.InformationContentEntity attribute) (bkbit.models.library_generation.Library attribute) (bkbit.models.library_generation.LibraryAliquot attribute) (bkbit.models.library_generation.LibraryConstruction attribute) (bkbit.models.library_generation.LibraryPool attribute) (bkbit.models.library_generation.LibraryPooling attribute) (bkbit.models.library_generation.MaterialSample attribute) (bkbit.models.library_generation.NamedThing attribute) (bkbit.models.library_generation.OrganismTaxon attribute) (bkbit.models.library_generation.PhysicalEntity attribute) (bkbit.models.library_generation.Procedure attribute) (bkbit.models.library_generation.RelativeFrequencyAnalysisResult attribute) (bkbit.models.library_generation.StudyResult attribute) (bkbit.models.library_generation.TissueDissection attribute) (bkbit.models.library_generation.TissueSample attribute) (bkbit.models.library_generation.VersionedNamedThing attribute)

Xylazine (bkbit.models.donor.DrugsFound attribute)

Y

y_direction (bkbit.models.anatomical_structure.ImageDataset attribute) (bkbit.models.cell_taxonomy.ImageDataset attribute) y_resolution (bkbit.models.anatomical_structure.ImageDataset attribute) (bkbit.models.cell_taxonomy.ImageDataset attribute) y_size (bkbit.models.anatomical_structure.ImageDataset attribute) (bkbit.models.cell_taxonomy.ImageDataset attribute) YamlTrimmer (class in bkbit.model_editors.linkml_trimmer) yao (bkbit.models.donor.Language attribute)

yap (bkbit.models.donor.Language attribute) YE (bkbit.models.donor.BirthCountry attribute) year (bkbit.models.library_generation.AgeAtDeathUnit attribute) yid (bkbit.models.donor.Language attribute) Yohimbine (bkbit.models.donor.DrugsFound attribute) yor (bkbit.models.donor.Language attribute) ypk (bkbit.models.donor.Language attribute) YT (bkbit.models.donor.BirthCountry attribute)

Z

z_direction (bkbit.models.anatomical_structure.ImageDataset attribute) (bkbit.models.cell_taxonomy.ImageDataset attribute) z_resolution (bkbit.models.anatomical_structure.ImageDataset attribute) (bkbit.models.cell_taxonomy.ImageDataset attribute) z_size (bkbit.models.anatomical_structure.ImageDataset attribute) (bkbit.models.cell_taxonomy.ImageDataset attribute) ZA (bkbit.models.donor.BirthCountry attribute) Zaleplon (bkbit.models.donor.DrugsFound attribute) zap (bkbit.models.donor.Language attribute) zbl (bkbit.models.donor.Language attribute) zen (bkbit.models.donor.Language attribute) zgh (bkbit.models.donor.Language attribute)

zha (bkbit.models.donor.Language attribute) zho_LEFT_PARENTHESISTRIGHT_PARENTHESIS (bkbit.models.donor.Language attribute) Ziprasidone (bkbit.models.donor.DrugsFound attribute) ZM (bkbit.models.donor.BirthCountry attribute) znd (bkbit.models.donor.Language attribute) Zolpidem (bkbit.models.donor.DrugsFound attribute) Zonisamide (bkbit.models.donor.DrugsFound attribute) zul (bkbit.models.donor.Language attribute) zun (bkbit.models.donor.Language attribute) ZW (bkbit.models.donor.BirthCountry attribute) zxx (bkbit.models.donor.Language attribute) zza (bkbit.models.donor.Language attribute)