bkbit.data_translators package
Submodules
- bkbit.data_translators.anatomical_structure_translator module
AnS
AnS.assign_func_header()
AnS.generate_anatomical_annotation_set()
AnS.generate_anatomical_space()
AnS.generate_image_dataset()
AnS.generate_parcellation_annotation()
AnS.generate_parcellation_annotation_term_map()
AnS.generate_parcellation_atlas()
AnS.generate_parcellation_color_assignment()
AnS.generate_parcellation_color_scheme()
AnS.generate_parcellation_term()
AnS.generate_parcellation_term_set()
AnS.generate_parcellation_terminology()
AnS.provide_data()
AnS.read_data()
AnS.serialize_to_jsonld()
- bkbit.data_translators.file_manifest_translator module
- bkbit.data_translators.genome_annotation_translator module
Gff3
Gff3.content_url
Gff3.assembly_accession
Gff3.assembly_strain
Gff3.log_level
Gff3.log_to_file
Gff3.__init__()
Gff3.parse_url()
Gff3.__download_gff_file()
Gff3.generate_organism_taxon()
Gff3.assign_authority_type()
Gff3.generate_genome_assembly()
Gff3.generate_genome_annotation()
Gff3.generate_digest()
Gff3.__get_line_count()
Gff3.parse()
Gff3.generate_ensembl_gene_annotation()
Gff3.generate_ncbi_gene_annotation()
Gff3.__get_attribute()
Gff3.__resolve_ncbi_gene_annotation()
Gff3.__merge_values()
Gff3.serialize_to_jsonld()
Gff3.assign_authority_type()
Gff3.generate_digest()
Gff3.generate_ensembl_gene_annotation()
Gff3.generate_genome_annotation()
Gff3.generate_genome_assembly()
Gff3.generate_ncbi_gene_annotation()
Gff3.generate_organism_taxon()
Gff3.parse()
Gff3.parse_url()
Gff3.serialize_to_jsonld()
- bkbit.data_translators.library_generation_translator module