bkbit

GETTING STARTED

  • Installation

DATA TRANSLATORS

  • Specimen Digital File Manifest
  • Specimen Library Aliquot List
  • Specimen Metadata
  • Annotated Genome Data

MODEL CONVERTERS

  • Spreadsheet to LinkML Schema

MODEL EDITORS

  • LinkML Schema Trimmer

REFERENCE

  • bkbit
    • bkbit package
      • Subpackages
        • bkbit.data_translators package
        • bkbit.model_converters package
        • bkbit.model_editors package
        • bkbit.models package
        • bkbit.utils package
      • Submodules
      • Module contents
bkbit
  • bkbit
  • bkbit package
  • bkbit.utils package
  • Edit on GitHub

bkbit.utils package

Submodules

  • bkbit.utils.get_ncbi_taxonomy module
    • download_and_extract_zip_in_memory()
    • load_json()
    • parse_dmp_content()
    • process_and_save_taxdmp_in_memory()
  • bkbit.utils.load_json module
    • load_json()
  • bkbit.utils.nimp_api_endpoints module
    • get_ancestors()
    • get_data()
    • get_descendants()
    • get_donor()
  • bkbit.utils.setup_logger module
    • LOG_LEVELS
    • setup_logger()

Module contents

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