bkbit.models package
Submodules
- bkbit.models.anatomical_structure module
ANATOMICALDIRECTIONAnatomicalAnnotationSetAnatomicalAnnotationSet.categoryAnatomicalAnnotationSet.descriptionAnatomicalAnnotationSet.idAnatomicalAnnotationSet.linkml_metaAnatomicalAnnotationSet.model_computed_fieldsAnatomicalAnnotationSet.model_configAnatomicalAnnotationSet.model_fieldsAnatomicalAnnotationSet.nameAnatomicalAnnotationSet.parameterizesAnatomicalAnnotationSet.revision_ofAnatomicalAnnotationSet.version
AnatomicalSpaceConfiguredBaseModelDISTANCEUNITImageDatasetImageDataset.categoryImageDataset.descriptionImageDataset.idImageDataset.linkml_metaImageDataset.model_computed_fieldsImageDataset.model_configImageDataset.model_fieldsImageDataset.nameImageDataset.revision_ofImageDataset.unitImageDataset.versionImageDataset.x_directionImageDataset.x_resolutionImageDataset.x_sizeImageDataset.y_directionImageDataset.y_resolutionImageDataset.y_sizeImageDataset.z_directionImageDataset.z_resolutionImageDataset.z_size
LinkMLMetaNamedThingParcellationAnnotationParcellationAnnotationTermMapParcellationAtlasParcellationAtlas.categoryParcellationAtlas.descriptionParcellationAtlas.has_anatomical_annotation_setParcellationAtlas.has_anatomical_spaceParcellationAtlas.has_parcellation_terminologyParcellationAtlas.idParcellationAtlas.linkml_metaParcellationAtlas.model_computed_fieldsParcellationAtlas.model_configParcellationAtlas.model_fieldsParcellationAtlas.nameParcellationAtlas.revision_ofParcellationAtlas.specialization_ofParcellationAtlas.version
ParcellationColorAssignmentParcellationColorAssignment.colorParcellationColorAssignment.linkml_metaParcellationColorAssignment.model_computed_fieldsParcellationColorAssignment.model_configParcellationColorAssignment.model_fieldsParcellationColorAssignment.part_of_parcellation_color_schemeParcellationColorAssignment.subject_parcellation_term
ParcellationColorSchemeParcellationColorScheme.categoryParcellationColorScheme.descriptionParcellationColorScheme.idParcellationColorScheme.linkml_metaParcellationColorScheme.model_computed_fieldsParcellationColorScheme.model_configParcellationColorScheme.model_fieldsParcellationColorScheme.nameParcellationColorScheme.revision_ofParcellationColorScheme.subject_parcellation_terminologyParcellationColorScheme.version
ParcellationTermParcellationTerm.categoryParcellationTerm.descriptionParcellationTerm.has_parent_parcellation_termParcellationTerm.idParcellationTerm.linkml_metaParcellationTerm.model_computed_fieldsParcellationTerm.model_configParcellationTerm.model_fieldsParcellationTerm.nameParcellationTerm.ordinalParcellationTerm.part_of_parcellation_term_setParcellationTerm.symbol
ParcellationTermSetParcellationTermSet.categoryParcellationTermSet.descriptionParcellationTermSet.has_parent_parcellation_term_setParcellationTermSet.idParcellationTermSet.linkml_metaParcellationTermSet.model_computed_fieldsParcellationTermSet.model_configParcellationTermSet.model_fieldsParcellationTermSet.nameParcellationTermSet.ordinalParcellationTermSet.part_of_parcellation_terminology
ParcellationTerminologyParcellationTerminology.categoryParcellationTerminology.descriptionParcellationTerminology.idParcellationTerminology.linkml_metaParcellationTerminology.model_computed_fieldsParcellationTerminology.model_configParcellationTerminology.model_fieldsParcellationTerminology.nameParcellationTerminology.revision_ofParcellationTerminology.version
VersionedNamedThingVersionedNamedThing.categoryVersionedNamedThing.descriptionVersionedNamedThing.idVersionedNamedThing.linkml_metaVersionedNamedThing.model_computed_fieldsVersionedNamedThing.model_configVersionedNamedThing.model_fieldsVersionedNamedThing.nameVersionedNamedThing.revision_ofVersionedNamedThing.version
- bkbit.models.genome_annotation module
ActivityActivity.categoryActivity.deprecatedActivity.descriptionActivity.full_nameActivity.has_attributeActivity.idActivity.iriActivity.linkml_metaActivity.model_computed_fieldsActivity.model_configActivity.model_fieldsActivity.nameActivity.provided_byActivity.synonymActivity.typeActivity.xref
ActivityAndBehaviorAnnotationAnnotationCollectionAttributeAttribute.categoryAttribute.deprecatedAttribute.descriptionAttribute.full_nameAttribute.has_attributeAttribute.has_attribute_typeAttribute.has_qualitative_valueAttribute.has_quantitative_valueAttribute.idAttribute.iriAttribute.linkml_metaAttribute.model_computed_fieldsAttribute.model_configAttribute.model_fieldsAttribute.nameAttribute.provided_byAttribute.synonymAttribute.typeAttribute.xref
AuthorityTypeBioTypeBiologicalEntityBiologicalEntity.categoryBiologicalEntity.deprecatedBiologicalEntity.descriptionBiologicalEntity.full_nameBiologicalEntity.has_attributeBiologicalEntity.idBiologicalEntity.in_taxonBiologicalEntity.in_taxon_labelBiologicalEntity.iriBiologicalEntity.linkml_metaBiologicalEntity.model_computed_fieldsBiologicalEntity.model_configBiologicalEntity.model_fieldsBiologicalEntity.nameBiologicalEntity.provided_byBiologicalEntity.synonymBiologicalEntity.typeBiologicalEntity.xref
ChecksumChemicalEntityOrGeneOrGeneProductConfiguredBaseModelDatasetDataset.categoryDataset.creation_dateDataset.deprecatedDataset.descriptionDataset.formatDataset.full_nameDataset.has_attributeDataset.idDataset.iriDataset.licenseDataset.linkml_metaDataset.model_computed_fieldsDataset.model_configDataset.model_fieldsDataset.nameDataset.provided_byDataset.rightsDataset.synonymDataset.typeDataset.xref
DigestTypeEntityGeneGene.categoryGene.deprecatedGene.descriptionGene.full_nameGene.has_attributeGene.has_biological_sequenceGene.idGene.in_taxonGene.in_taxon_labelGene.iriGene.linkml_metaGene.model_computed_fieldsGene.model_configGene.model_fieldsGene.nameGene.provided_byGene.symbolGene.synonymGene.typeGene.xref
GeneAnnotationGeneAnnotation.categoryGeneAnnotation.deprecatedGeneAnnotation.descriptionGeneAnnotation.full_nameGeneAnnotation.has_attributeGeneAnnotation.has_biological_sequenceGeneAnnotation.idGeneAnnotation.in_taxonGeneAnnotation.in_taxon_labelGeneAnnotation.iriGeneAnnotation.linkml_metaGeneAnnotation.model_computed_fieldsGeneAnnotation.model_configGeneAnnotation.model_fieldsGeneAnnotation.molecular_typeGeneAnnotation.nameGeneAnnotation.provided_byGeneAnnotation.referenced_inGeneAnnotation.source_idGeneAnnotation.symbolGeneAnnotation.synonymGeneAnnotation.typeGeneAnnotation.xref
GeneOrGeneProductGenomeGenome.categoryGenome.deprecatedGenome.descriptionGenome.full_nameGenome.has_attributeGenome.has_biological_sequenceGenome.idGenome.in_taxonGenome.in_taxon_labelGenome.iriGenome.linkml_metaGenome.model_computed_fieldsGenome.model_configGenome.model_fieldsGenome.nameGenome.provided_byGenome.synonymGenome.typeGenome.xref
GenomeAnnotationGenomeAnnotation.authorityGenomeAnnotation.categoryGenomeAnnotation.content_urlGenomeAnnotation.deprecatedGenomeAnnotation.descriptionGenomeAnnotation.digestGenomeAnnotation.full_nameGenomeAnnotation.has_attributeGenomeAnnotation.has_biological_sequenceGenomeAnnotation.idGenomeAnnotation.in_taxonGenomeAnnotation.in_taxon_labelGenomeAnnotation.iriGenomeAnnotation.linkml_metaGenomeAnnotation.model_computed_fieldsGenomeAnnotation.model_configGenomeAnnotation.model_fieldsGenomeAnnotation.nameGenomeAnnotation.provided_byGenomeAnnotation.reference_assemblyGenomeAnnotation.synonymGenomeAnnotation.typeGenomeAnnotation.versionGenomeAnnotation.xref
GenomeAssemblyGenomeAssembly.categoryGenomeAssembly.deprecatedGenomeAssembly.descriptionGenomeAssembly.full_nameGenomeAssembly.has_attributeGenomeAssembly.idGenomeAssembly.in_taxonGenomeAssembly.in_taxon_labelGenomeAssembly.iriGenomeAssembly.linkml_metaGenomeAssembly.model_computed_fieldsGenomeAssembly.model_configGenomeAssembly.model_fieldsGenomeAssembly.nameGenomeAssembly.provided_byGenomeAssembly.strainGenomeAssembly.synonymGenomeAssembly.typeGenomeAssembly.versionGenomeAssembly.xref
GenomicEntityInformationContentEntityInformationContentEntity.categoryInformationContentEntity.creation_dateInformationContentEntity.deprecatedInformationContentEntity.descriptionInformationContentEntity.formatInformationContentEntity.full_nameInformationContentEntity.has_attributeInformationContentEntity.idInformationContentEntity.iriInformationContentEntity.licenseInformationContentEntity.linkml_metaInformationContentEntity.model_computed_fieldsInformationContentEntity.model_configInformationContentEntity.model_fieldsInformationContentEntity.nameInformationContentEntity.provided_byInformationContentEntity.rightsInformationContentEntity.synonymInformationContentEntity.typeInformationContentEntity.xref
LinkMLMetaMacromolecularMachineMixinMaterialSampleMaterialSample.categoryMaterialSample.deprecatedMaterialSample.descriptionMaterialSample.full_nameMaterialSample.has_attributeMaterialSample.idMaterialSample.iriMaterialSample.linkml_metaMaterialSample.model_computed_fieldsMaterialSample.model_configMaterialSample.model_fieldsMaterialSample.nameMaterialSample.provided_byMaterialSample.synonymMaterialSample.typeMaterialSample.xref
NamedThingNamedThing.categoryNamedThing.deprecatedNamedThing.descriptionNamedThing.full_nameNamedThing.has_attributeNamedThing.idNamedThing.iriNamedThing.linkml_metaNamedThing.model_computed_fieldsNamedThing.model_configNamedThing.model_fieldsNamedThing.nameNamedThing.provided_byNamedThing.synonymNamedThing.typeNamedThing.xref
OccurrentOntologyClassOrganismTaxonOrganismTaxon.categoryOrganismTaxon.deprecatedOrganismTaxon.descriptionOrganismTaxon.full_nameOrganismTaxon.has_attributeOrganismTaxon.has_taxonomic_rankOrganismTaxon.idOrganismTaxon.iriOrganismTaxon.linkml_metaOrganismTaxon.model_computed_fieldsOrganismTaxon.model_configOrganismTaxon.model_fieldsOrganismTaxon.nameOrganismTaxon.provided_byOrganismTaxon.synonymOrganismTaxon.typeOrganismTaxon.xref
PhysicalEntityPhysicalEntity.categoryPhysicalEntity.deprecatedPhysicalEntity.descriptionPhysicalEntity.full_namePhysicalEntity.has_attributePhysicalEntity.idPhysicalEntity.iriPhysicalEntity.linkml_metaPhysicalEntity.model_computed_fieldsPhysicalEntity.model_configPhysicalEntity.model_fieldsPhysicalEntity.namePhysicalEntity.provided_byPhysicalEntity.synonymPhysicalEntity.typePhysicalEntity.xref
PhysicalEssencePhysicalEssenceOrOccurrentProcedureProcedure.categoryProcedure.deprecatedProcedure.descriptionProcedure.full_nameProcedure.has_attributeProcedure.idProcedure.iriProcedure.linkml_metaProcedure.model_computed_fieldsProcedure.model_configProcedure.model_fieldsProcedure.nameProcedure.provided_byProcedure.synonymProcedure.typeProcedure.xref
QuantityValueSubjectOfInvestigationTaxonomicRankThingWithTaxon
- bkbit.models.library_generation module