Slot: percent_cdna_longer_than_400bp

QC metric to measure mRNA degradation of cDNA. Higher % is higher quality starting material. Over 400bp is used as a universal cutoff for intact (full length) vs degraded cDNA and is a common output from Bioanalyzer and Fragment Analyzer elecropheragrams.

URI: [bican:percent_cdna_longer_than_400bp](https://identifiers.org/brain-bican/vocab/percent_cdna_longer_than_400bp) ## Applicable Classes | Name | Description | Modifies Slot | | --- | --- | --- | | [AmplifiedCdna](AmplifiedCdna.md) | A collection of cDNA molecules derived and amplified from an input barcoded c... | no | ## Properties ### Type and Range | Property | Value | | --- | --- | | Range | [Float](Float.md) | | Domain Of | [AmplifiedCdna](AmplifiedCdna.md) | ### Cardinality and Requirements | Property | Value | | --- | --- | ### Slot Characteristics | Property | Value | | --- | --- | | Owner | [AmplifiedCdna](AmplifiedCdna.md) | ## In Subsets * [Analysis](Analysis.md) ## Identifier and Mapping Information ### Schema Source * from schema: https://identifiers.org/brain-bican/library-generation-schema ## Mappings | Mapping Type | Mapped Value | | --- | --- | | self | bican:percent_cdna_longer_than_400bp | | native | bican:percent_cdna_longer_than_400bp | | exact | NIMP:PD-JJJJWD35 | ## LinkML Source

name: percent_cdna_longer_than_400bp
local_names:
  NIMP:
    local_name_source: NIMP
    local_name_value: amplified_cdna_percent_cdna_longer_than_400bp
description: QC metric to measure mRNA degradation of cDNA.  Higher % is higher quality
  starting material.  Over 400bp is used as a universal cutoff for intact (full length)
  vs degraded cDNA and is a common output from Bioanalyzer and Fragment Analyzer elecropheragrams.
in_subset:
- analysis
from_schema: https://identifiers.org/brain-bican/library-generation-schema
exact_mappings:
- NIMP:PD-JJJJWD35
rank: 1000
owner: AmplifiedCdna
domain_of:
- AmplifiedCdna
range: float