BKE Taxonomy

erDiagram Abbreviation { string id AbbreviationEntityType entity_type string meaning string term uriorcurieList xref label_type name narrative_text description uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type } CellSpecimen { string id label_type name narrative_text description uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type uriorcurieList xref } CellTypeSet { string id string name string description string accession_id CellTypeSetType cell_type_set_type integer order uriorcurieList xref uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type } CellTypeTaxon { string id string name string description string accession_id integer number_of_cells integer order uriorcurieList xref uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type } CellTypeTaxonomy { string id string name string description string accession_id date creation_date uriorcurieList xref uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type } CellTypeTaxonomyCreationProcess { string id label_type name narrative_text description uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type uriorcurieList xref } Cluster { string id string name string accession_id integer number_of_observations uriorcurieList xref narrative_text description uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type } ClusterSet { string id string name string description string accession_id date creation_date uriorcurieList xref uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type } ClusteringProcess { string id label_type name narrative_text description uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type uriorcurieList xref } ColorPalette { string id string name string description uriorcurieList xref uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type } DisplayColor { string id string color_hex_triplet uriorcurieList xref label_type name narrative_text description uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type } MatrixFile { stringList content_url uriorcurieList xref string id label_type name narrative_text description uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type } ObservationMatrix { stringList content_url uriorcurieList xref string id label_type name narrative_text description uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type } ObservationMatrixCreationProcess { string id label_type name narrative_text description uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type uriorcurieList xref } ObservationRow { string label uriorcurieList xref string id label_type name narrative_text description uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type } SpatialProportions { float adj float gpe float gpi float sn float sth float str string id label_type name narrative_text description uriorcurieList category date creation_date boolean deprecated uriorcurieList equivalent_identifiers string format label_type full_name float information_content iri_type iri string license uriorcurieList named_thing_category stringList provided_by string rights label_typeList synonym stringList type uriorcurieList xref } Abbreviation ||--}o CellTypeTaxon : "denotes_cell_type" Abbreviation ||--}o GeneAnnotation : "denotes_gene_annotation" Abbreviation ||--}o ParcellationTerm : "denotes_parcellation_term" CellTypeSet ||--|o CellTypeSet : "has_parent" CellTypeSet ||--|o CellTypeTaxonomy : "part_of_taxonomy" CellTypeSet ||--}o Abbreviation : "has_abbreviation" CellTypeSet ||--}o CellTypeTaxon : "contains_taxon" CellTypeTaxon ||--|o CellTypeTaxon : "has_parent" CellTypeTaxon ||--|o CellTypeTaxonomy : "part_of_taxonomy" CellTypeTaxon ||--|o SpatialProportions : "spatial_proportions_human, spatial_proportions_macaque, spatial_proportions_marmoset, spatial_regional_proportions" CellTypeTaxon ||--}o Abbreviation : "has_abbreviation" CellTypeTaxon ||--}o Cluster : "contains_cluster" CellTypeTaxon ||--}o GeneAnnotation : "curated_markers_to_mouse, curated_markers_to_primates" CellTypeTaxonomy ||--|o CellTypeTaxonomy : "is_revision_of" CellTypeTaxonomy ||--|o CellTypeTaxonomyCreationProcess : "was_generated_by" CellTypeTaxonomy ||--}o ClusterSet : "was_derived_from" CellTypeTaxonomyCreationProcess ||--}o ClusterSet : "used" Cluster ||--|o ClusterSet : "part_of_set" Cluster ||--}o CellSpecimen : "contains_sample" Cluster ||--}o ObservationRow : "contains_observation" ClusterSet ||--|o ClusterSet : "is_revision_of" ClusterSet ||--|o ClusteringProcess : "was_generated_by" ClusterSet ||--}o ObservationMatrix : "was_derived_from" ClusteringProcess ||--}o ObservationMatrix : "used" ColorPalette ||--|o CellTypeTaxonomy : "is_palette_for" DisplayColor ||--|o CellTypeSet : "is_color_for_set" DisplayColor ||--|o CellTypeTaxon : "is_color_for_taxon" DisplayColor ||--|o ColorPalette : "part_of_palette" ObservationMatrix ||--|o ObservationMatrixCreationProcess : "was_generated_by" ObservationMatrix ||--}o CellSpecimen : "was_derived_from" ObservationMatrix ||--}o GeneAnnotation : "has_variable" ObservationMatrix ||--}o MatrixFile : "represented_by" ObservationRow ||--|o CellSpecimen : "was_derived_from" ObservationRow ||--|o MatrixFile : "represented_in" ObservationRow ||--|o ObservationMatrix : "part_of_matrix"