Cell Taxonomy

erDiagram Abbreviation { string id AbbreviationEntityType entity_type string meaning string term label_type name narrative_text description uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type uriorcurieList xref } Cell { string id string anatomical_region string anatomical_region_ontology_term_id string assay string assay_ontology_term_id string brain_region_ontology_term_id string cluster_id boolean is_primary_data string load_id SuspensionType suspension_type label_type name narrative_text description uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type uriorcurieList xref } CellTypeSet { string id string name CellTypeSetType cell_type_set_type integer order narrative_text description uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type uriorcurieList xref } CellTypeTaxon { string id string name string accession_id string cell_type_ontology_term stringList literature_name_long stringList literature_name_short stringList literature_support integer number_of_cells integer order narrative_text description uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type uriorcurieList xref } CellTypeTaxonomy { string id string accession_id string batch_condition string cellannotation_schema string cluster_algorithm string cluster_id_mean_expr string cluster_info uriList content_url string default_embedding string dendrogram boolean filter string gene_annotation_version string hierarchy string mode string quality_control_markers string reference_genome string schema_version string title label_type name narrative_text description uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type uriorcurieList xref } Cluster { string id string name integer number_of_observations narrative_text description uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type uriorcurieList xref } ClusterSet { string id string name narrative_text description uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type uriorcurieList xref } ColorPalette { string id string name string description uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type uriorcurieList xref } DisplayColor { string id string color_hex_triplet label_type name narrative_text description uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type uriorcurieList xref } Embedding { string id string embedding_key float embedding_matrix label_type name narrative_text description uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type uriorcurieList xref } ExpressionMatrix { string id uriList content_url ExpressionMatrixType matrix_type label_type name narrative_text description uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type uriorcurieList xref } Abbreviation ||--}o OntologyClass : "broad_match, close_match, exact_match, mapping_relation, narrow_match, related_match" Cell ||--|o Cluster : "part_of_cluster" CellTypeSet ||--|o CellTypeSet : "has_parent" CellTypeSet ||--|o CellTypeTaxonomy : "part_of_taxonomy" CellTypeSet ||--}o Abbreviation : "has_abbreviation" CellTypeTaxon ||--|o CellTypeSet : "part_of_set" CellTypeTaxon ||--|o CellTypeTaxon : "has_parent" CellTypeTaxon ||--}o Abbreviation : "has_abbreviation" CellTypeTaxon ||--}o GeneAnnotation : "curated_markers" CellTypeTaxon ||--}o OntologyClass : "broad_match, close_match, exact_match, mapping_relation, narrow_match, related_match" CellTypeTaxonomy ||--}o ClusterSet : "was_derived_from" CellTypeTaxonomy ||--}o Embedding : "has_embedding" CellTypeTaxonomy ||--}o ExpressionMatrix : "has_expression_matrix" Cluster ||--|o ClusterSet : "part_of_set" Cluster ||--}o CellTypeTaxon : "has_parent" ClusterSet ||--}o ExpressionMatrix : "was_derived_from" ColorPalette ||--|o CellTypeTaxonomy : "is_palette_for" DisplayColor ||--|o CellTypeSet : "is_color_for_set" DisplayColor ||--|o CellTypeTaxon : "is_color_for_taxon" DisplayColor ||--|o ColorPalette : "part_of_palette" ExpressionMatrix ||--}o GeneAnnotation : "has_variable"