Library Generation

erDiagram AmplifiedCdna { label_type name float amplified_cDNA_quantity_ng amplified_cdna_rna_amplification_pass_fail amplified_cDNA_result string cdna_amplification_set integer pcr_cycles float percent_cdna_longer_than_400bp date preparation_date uriorcurieList xref string id narrative_text description uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type } BarcodedCellSample { label_type name integer input_quantity_count integer number_of_expected_cells string port_well date preparation_date string tag_local_name barcoded_cell_sample_technique technique uriorcurieList xref string id narrative_text description uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type } BrainSlab { label_type name uriorcurieList xref string id narrative_text description uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type } CdnaAmplification { string id label_type name narrative_text description uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type uriorcurieList xref } CellBarcoding { string id label_type name narrative_text description uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type uriorcurieList xref } CellDissociation { string id label_type name narrative_text description uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type uriorcurieList xref } CellEnrichment { string id label_type name narrative_text description uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type uriorcurieList xref } DigitalAsset { stringList content_url string data_type stringList digest string id label_type name narrative_text description uriorcurieList category date creation_date boolean deprecated uriorcurieList equivalent_identifiers string format label_type full_name float information_content iri_type iri string license uriorcurieList named_thing_category stringList provided_by string rights label_typeList synonym stringList type uriorcurieList xref } DissectionRoiDelineation { string id label_type name narrative_text description uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type uriorcurieList xref } DissectionRoiPolygon { label_type name uriorcurieList xref string id narrative_text description uriorcurieList category boolean deprecated iri_type iri stringList type } DissociatedCellSample { label_type name cell_label_barcode cell_label_barcode dissociated_cell_sample_cell_prep_type cell_prep_type string patched_cell_structure date preparation_date uriorcurieList xref string id narrative_text description uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type } Donor { string id label_type name narrative_text description uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name label_type in_taxon_label float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type uriorcurieList xref } EnrichedCellSample { label_type name cell_label_barcode cell_label_barcode string enrichment_population string histone_modification_marker date preparation_date uriorcurieList xref string id narrative_text description uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type } EnrichedCellSampleSplitting { string id label_type name narrative_text description uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type uriorcurieList xref } Library { label_type name integer average_size_bp float concentration_nm float input_ng float library_quantity_ng library_prep_pass_fail library_result string prep_set date preparation_date float quantity_fmol library_r1_r2_index r1_r2_index library_technique technique uriorcurieList xref string id narrative_text description uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type } LibraryAliquot { label_type name fastq_file_alignment_status fastq_file_alignment_status uriorcurieList xref string id narrative_text description uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type } LibraryConstruction { string id label_type name narrative_text description uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type uriorcurieList xref } LibraryPool { label_type name string flowcell string local_tube_id date preparation_date string tube_barcode uriorcurieList xref string id narrative_text description uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type } LibraryPooling { string id label_type name narrative_text description uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type uriorcurieList xref } TissueDissection { string id label_type name narrative_text description uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type uriorcurieList xref } TissueSample { label_type name stringList structure uriorcurieList xref string id narrative_text description uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type } AmplifiedCdna ||--|o BarcodedCellSample : "was_derived_from" AmplifiedCdna ||--|o CdnaAmplification : "was_generated_by" BarcodedCellSample ||--|o CellBarcoding : "was_generated_by" CdnaAmplification ||--|o BarcodedCellSample : "used" CellDissociation ||--}o TissueSample : "used" CellEnrichment ||--}o DissociatedCellSample : "used" DigitalAsset ||--|o LibraryPool : "was_derived_from" DissectionRoiDelineation ||--|o BrainSlab : "used" DissectionRoiPolygon ||--|o BrainSlab : "annotates" DissectionRoiPolygon ||--|o DissectionRoiDelineation : "was_generated_by" DissociatedCellSample ||--|o CellDissociation : "was_generated_by" DissociatedCellSample ||--}o TissueSample : "was_derived_from" Donor ||--}o OrganismTaxon : "in taxon" EnrichedCellSampleSplitting ||--|o EnrichedCellSample : "used" Library ||--|o LibraryConstruction : "was_generated_by" LibraryAliquot ||--|o Library : "was_derived_from" LibraryPool ||--|o LibraryPooling : "was_generated_by" LibraryPool ||--}o LibraryAliquot : "was_derived_from" LibraryPooling ||--}o LibraryAliquot : "used" TissueDissection ||--|o BrainSlab : "used" TissueDissection ||--|o DissectionRoiPolygon : "was_guided_by" TissueSample ||--|o DissectionRoiPolygon : "dissection_was_guided_by" TissueSample ||--|o Donor : "was_derived_from" TissueSample ||--|o TissueDissection : "was_generated_by"