Library Generation

erDiagram AmplifiedCdna { label_type name float amplified_cDNA_quantity_ng amplified_cdna_rna_amplification_pass_fail amplified_cDNA_result float percent_cdna_longer_than_400bp uriorcurieList xref string id narrative_text description uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type } BarcodedCellSample { label_type name integer number_of_expected_cells uriorcurieList xref string id narrative_text description uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type } BrainSlab { label_type name uriorcurieList xref string id narrative_text description uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type } CdnaAmplification { date cDNA_amplification_process_date string cDNA_amplification_set integer pcr_cycles string id label_type name narrative_text description uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type uriorcurieList xref } CellBarcoding { barcoded_cell_sample_technique cell_barcoding_method string cell_barcoding_process_date integer input_quantity string port_well string id label_type name narrative_text description uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type uriorcurieList xref } CellDissociation { string cell_dissociation_process_date string id label_type name narrative_text description uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type uriorcurieList xref } CellEnrichment { string cell_enrichment_process_date string id label_type name narrative_text description uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type uriorcurieList xref } DigitalAsset { stringList content_url string data_type stringList digest string id label_type name narrative_text description uriorcurieList category date creation_date boolean deprecated uriorcurieList equivalent_identifiers string format label_type full_name float information_content iri_type iri string license uriorcurieList named_thing_category stringList provided_by string rights label_typeList synonym stringList type uriorcurieList xref } DissectionRoiDelineation { string id label_type name narrative_text description uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type uriorcurieList xref } DissectionRoiPolygon { label_type name uriorcurieList xref string id narrative_text description uriorcurieList category boolean deprecated iri_type iri stringList type } DissociatedCellSample { label_type name dissociated_cell_sample_cell_prep_type cell_prep_type dissociated_cell_sample_cell_label_barcode dissociated_cell_oligo_name uriorcurieList xref string id narrative_text description uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type } Donor { label_type name string age_at_death_description age_at_death_reference_point age_at_death_reference_point age_at_death_unit age_at_death_unit float age_at_death_value sex biological_sex string species uriorcurieList xref string id narrative_text description uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name label_type in_taxon_label float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type } EnrichedCellSample { label_type name string enriched_cell_oligo_name string enrichment_population string histone_modification_marker uriorcurieList xref string id narrative_text description uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type } EnrichedCellSampleSplitting { string id label_type name narrative_text description uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type uriorcurieList xref } Library { label_type name integer average_size_bp float concentration_nm float library_quantity_ng library_prep_pass_fail library_result float quantity_fmol library_r1_r2_index r1_r2_index uriorcurieList xref string id narrative_text description uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type } LibraryAliquot { label_type name uriorcurieList xref string id narrative_text description uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type } LibraryConstruction { float input_quantity_ng library_technique library_construction_method date library_construction_process_date string library_construction_set string id label_type name narrative_text description uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type uriorcurieList xref } LibraryPool { label_type name string tube_internal_label uriorcurieList xref string id narrative_text description uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type } LibraryPooling { string process_date string id label_type name narrative_text description uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type uriorcurieList xref } TissueDissection { string id label_type name narrative_text description uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type uriorcurieList xref } TissueSample { label_type name stringList structure uriorcurieList xref string id narrative_text description uriorcurieList category boolean deprecated uriorcurieList equivalent_identifiers label_type full_name float information_content iri_type iri uriorcurieList named_thing_category stringList provided_by label_typeList synonym stringList type } AmplifiedCdna ||--|o BarcodedCellSample : "was_derived_from" AmplifiedCdna ||--|o CdnaAmplification : "was_generated_by" BarcodedCellSample ||--|o CellBarcoding : "was_generated_by" CdnaAmplification ||--|o BarcodedCellSample : "used" CellDissociation ||--}o TissueSample : "used" CellEnrichment ||--}o DissociatedCellSample : "used" DigitalAsset ||--|o LibraryPool : "was_derived_from" DissectionRoiDelineation ||--|o BrainSlab : "used" DissectionRoiPolygon ||--|o BrainSlab : "annotates" DissectionRoiPolygon ||--|o DissectionRoiDelineation : "was_generated_by" DissociatedCellSample ||--|o CellDissociation : "was_generated_by" DissociatedCellSample ||--}o TissueSample : "was_derived_from" Donor ||--}o OrganismTaxon : "in taxon" EnrichedCellSampleSplitting ||--|o EnrichedCellSample : "used" Library ||--|o LibraryConstruction : "was_generated_by" LibraryAliquot ||--|o Library : "was_derived_from" LibraryPool ||--|o LibraryPooling : "was_generated_by" LibraryPool ||--}o LibraryAliquot : "was_derived_from" LibraryPooling ||--}o LibraryAliquot : "used" TissueDissection ||--|o BrainSlab : "used" TissueDissection ||--|o DissectionRoiPolygon : "was_guided_by" TissueSample ||--|o DissectionRoiPolygon : "dissection_was_guided_by" TissueSample ||--|o Donor : "was_derived_from" TissueSample ||--|o TissueDissection : "was_generated_by"