Subset: Uns

Location within anndata object that stores header and everything else.

URI: [Uns](Uns.md) ## Identifier and Mapping Information ### Schema Source * from schema: https://w3id.org/brain-bican/cell-taxonomy ## Slots in subset | Slot | Description | | --- | --- | | [accession_id](accession_id.md) | A provider-assigned accession identifier for a given entity | | [batch_condition](batch_condition.md) | Cell metadata key(s) in obs that define batches for normalization or integrat... | | [cell_type_set_type](cell_type_set_type.md) | A tag denoting whether this grouping represents a taxonomic level or neighbor... | | [cellannotation_schema](cellannotation_schema.md) | CAS annotation schema stored as JSON encoding labelset and annotation metadat... | | [cluster_algorithm](cluster_algorithm.md) | Full description of clustering algorithm and parameters used to produce clust... | | [cluster_info](cluster_info.md) | Summary table of cluster-level metadata including cluster sizes and represent... | | [color_hex_triplet](color_hex_triplet.md) | A hex string representing the display color for an associated entity | | [curated_markers](curated_markers.md) | Marker genes curated as characteristic of this cell type | | [default_embedding](default_embedding.md) | Key in obsm of the embedding to display by default; must match an X_-prefixed... | | [dendrogram](dendrogram.md) | JSON-formatted hierarchical clustering dendrogram encoding the taxonomy hiera... | | [entity_type](entity_type.md) | The entity type which the abbreviation term denotes | | [filter](filter.md) | Per-mode boolean flags indicating cells to exclude (True means exclude) | | [gene_annotation_version](gene_annotation_version.md) | Genome annotation version used during alignment | | [hierarchy](hierarchy.md) | Ordered mapping of annotation level names to integer ranks; lower rank means ... | | [is_color_for_set](is_color_for_set.md) | The associated cell type set for the specified display color | | [is_color_for_taxon](is_color_for_taxon.md) | The associated cell type taxon for the specified display color | | [is_palette_for](is_palette_for.md) | The cell type taxonomy for which the palette provides display color propertie... | | [literature_name_long](literature_name_long.md) | Full name used for this cell type in the supporting literature | | [literature_name_short](literature_name_short.md) | Short name used for this cell type in the supporting literature | | [literature_support](literature_support.md) | Published study in which this cell type was previously described | | [meaning](meaning.md) | The decoded meaning of the abbreviation term | | [mode](mode.md) | Active taxonomy mode controlling which subset of cells and analysis component... | | [number_of_cells](number_of_cells.md) | The aggregated number of cells that defines this cell type taxon | | [number_of_observations](number_of_observations.md) | Number of cells assigned to this cluster | | [order](order.md) | The priority or display order of an entity among all other entities of the sa... | | [part_of_palette](part_of_palette.md) | The color palette for which the display color map is part of | | [part_of_taxonomy](part_of_taxonomy.md) | The taxonomy for which this annotation level is defined | | [quality_control_markers](quality_control_markers.md) | Marker gene expression data for patchseq quality control analysis | | [reference_genome](reference_genome.md) | Reference genome assembly used to align the molecular measurements | | [schema_version](schema_version.md) | Version of the AIT schema used to produce this file (e | | [term](term.md) | An abbreviation term as it appears in a cell type or cell set name | | [title](title.md) | Description differentiating this taxonomy from others in the same collection;... |