Class: ProvEntity
An entity is a physical, digital, conceptual, or other kind of thing with some fixed aspects; entities may be real or imaginary.
URI: [prov:Entity](http://www.w3.org/ns/prov#Entity)
[ProvEntity](ProvEntity.md) | A derivation is a transformation of an entity into another, an update of an e... | direct | | [was_generated_by](was_generated_by.md) | 0..1
[ProvActivity](ProvActivity.md) | Generation is the completion of production of a new entity by an activity | direct | ## Mixin Usage | mixed into | description | | --- | --- | | [CellTypeTaxonomy](CellTypeTaxonomy.md) | A cell type taxonomy is a systematic classification of cell types and their h... | | [CellTypeSet](CellTypeSet.md) | A grouping of cell type taxons | | [CellTypeTaxon](CellTypeTaxon.md) | A cell type taxon is a node in a taxonomy | | [ClusterSet](ClusterSet.md) | The output of a clustering process where input observations are organized or ... | | [Cluster](Cluster.md) | One specific cluster from the set of clusters determined by a clustering proc... | | [ObservationMatrix](ObservationMatrix.md) | A matrix (potentially virtual) of observations | | [ObservationRow](ObservationRow.md) | One specific row of the observation matrix representing a set of measurements... | | [CellSpecimen](CellSpecimen.md) | ( defined as in BERS) | | [Abbreviation](Abbreviation.md) | Maps an abbreviation string to its decoded meaning | | [MatrixFile](MatrixFile.md) | A digital file containing the representation of full or partial data matrix | | [ColorPalette](ColorPalette.md) | A schematic set of display colors that can be applied to individual component... | | [DisplayColor](DisplayColor.md) | One element of a color palette representing the association between a color a... | | [SpatialProportions](SpatialProportions.md) | Spatial distribution of expression, labeling, or anatomical density of a give... | ## Usages | used by | used in | type | used | | --- | --- | --- | --- | | [CellTypeSet](CellTypeSet.md) | [was_derived_from](was_derived_from.md) | range | [ProvEntity](ProvEntity.md) | | [CellTypeTaxon](CellTypeTaxon.md) | [was_derived_from](was_derived_from.md) | range | [ProvEntity](ProvEntity.md) | | [Cluster](Cluster.md) | [was_derived_from](was_derived_from.md) | range | [ProvEntity](ProvEntity.md) | | [ObservationMatrixCreationProcess](ObservationMatrixCreationProcess.md) | [used](used.md) | range | [ProvEntity](ProvEntity.md) | | [CellSpecimen](CellSpecimen.md) | [was_derived_from](was_derived_from.md) | range | [ProvEntity](ProvEntity.md) | | [Abbreviation](Abbreviation.md) | [was_derived_from](was_derived_from.md) | range | [ProvEntity](ProvEntity.md) | | [MatrixFile](MatrixFile.md) | [was_derived_from](was_derived_from.md) | range | [ProvEntity](ProvEntity.md) | | [ColorPalette](ColorPalette.md) | [was_derived_from](was_derived_from.md) | range | [ProvEntity](ProvEntity.md) | | [DisplayColor](DisplayColor.md) | [was_derived_from](was_derived_from.md) | range | [ProvEntity](ProvEntity.md) | | [SpatialProportions](SpatialProportions.md) | [was_derived_from](was_derived_from.md) | range | [ProvEntity](ProvEntity.md) | | [ProvActivity](ProvActivity.md) | [used](used.md) | range | [ProvEntity](ProvEntity.md) | | [ProvEntity](ProvEntity.md) | [was_derived_from](was_derived_from.md) | range | [ProvEntity](ProvEntity.md) | ## Identifier and Mapping Information ### Schema Source * from schema: https://w3id.org/brain-bican/bke-taxonomy ## Mappings | Mapping Type | Mapped Value | | --- | --- | | self | prov:Entity | | native | bican:ProvEntity | ## LinkML Source ### Direct
### Induced
classDiagram
class ProvEntity
click ProvEntity href "../ProvEntity/"
ProvEntity <|-- CellTypeTaxonomy
click CellTypeTaxonomy href "../CellTypeTaxonomy/"
ProvEntity <|-- CellTypeSet
click CellTypeSet href "../CellTypeSet/"
ProvEntity <|-- CellTypeTaxon
click CellTypeTaxon href "../CellTypeTaxon/"
ProvEntity <|-- ClusterSet
click ClusterSet href "../ClusterSet/"
ProvEntity <|-- Cluster
click Cluster href "../Cluster/"
ProvEntity <|-- ObservationMatrix
click ObservationMatrix href "../ObservationMatrix/"
ProvEntity <|-- ObservationRow
click ObservationRow href "../ObservationRow/"
ProvEntity <|-- CellSpecimen
click CellSpecimen href "../CellSpecimen/"
ProvEntity <|-- Abbreviation
click Abbreviation href "../Abbreviation/"
ProvEntity <|-- MatrixFile
click MatrixFile href "../MatrixFile/"
ProvEntity <|-- ColorPalette
click ColorPalette href "../ColorPalette/"
ProvEntity <|-- DisplayColor
click DisplayColor href "../DisplayColor/"
ProvEntity <|-- SpatialProportions
click SpatialProportions href "../SpatialProportions/"
ProvEntity : was_derived_from
ProvEntity --> "0..1" ProvEntity : was_derived_from
click ProvEntity href "../ProvEntity/"
ProvEntity : was_generated_by
ProvEntity --> "0..1" ProvActivity : was_generated_by
click ProvActivity href "../ProvActivity/"
## Class Properties
| Property | Value |
| --- | --- |
| Class URI | [prov:Entity](http://www.w3.org/ns/prov#Entity) |
| Mixin | Yes |
## Slots
| Name | Cardinality and Range | Description | Inheritance |
| --- | --- | --- | --- |
| [was_derived_from](was_derived_from.md) | 0..1 [ProvEntity](ProvEntity.md) | A derivation is a transformation of an entity into another, an update of an e... | direct | | [was_generated_by](was_generated_by.md) | 0..1
[ProvActivity](ProvActivity.md) | Generation is the completion of production of a new entity by an activity | direct | ## Mixin Usage | mixed into | description | | --- | --- | | [CellTypeTaxonomy](CellTypeTaxonomy.md) | A cell type taxonomy is a systematic classification of cell types and their h... | | [CellTypeSet](CellTypeSet.md) | A grouping of cell type taxons | | [CellTypeTaxon](CellTypeTaxon.md) | A cell type taxon is a node in a taxonomy | | [ClusterSet](ClusterSet.md) | The output of a clustering process where input observations are organized or ... | | [Cluster](Cluster.md) | One specific cluster from the set of clusters determined by a clustering proc... | | [ObservationMatrix](ObservationMatrix.md) | A matrix (potentially virtual) of observations | | [ObservationRow](ObservationRow.md) | One specific row of the observation matrix representing a set of measurements... | | [CellSpecimen](CellSpecimen.md) | ( defined as in BERS) | | [Abbreviation](Abbreviation.md) | Maps an abbreviation string to its decoded meaning | | [MatrixFile](MatrixFile.md) | A digital file containing the representation of full or partial data matrix | | [ColorPalette](ColorPalette.md) | A schematic set of display colors that can be applied to individual component... | | [DisplayColor](DisplayColor.md) | One element of a color palette representing the association between a color a... | | [SpatialProportions](SpatialProportions.md) | Spatial distribution of expression, labeling, or anatomical density of a give... | ## Usages | used by | used in | type | used | | --- | --- | --- | --- | | [CellTypeSet](CellTypeSet.md) | [was_derived_from](was_derived_from.md) | range | [ProvEntity](ProvEntity.md) | | [CellTypeTaxon](CellTypeTaxon.md) | [was_derived_from](was_derived_from.md) | range | [ProvEntity](ProvEntity.md) | | [Cluster](Cluster.md) | [was_derived_from](was_derived_from.md) | range | [ProvEntity](ProvEntity.md) | | [ObservationMatrixCreationProcess](ObservationMatrixCreationProcess.md) | [used](used.md) | range | [ProvEntity](ProvEntity.md) | | [CellSpecimen](CellSpecimen.md) | [was_derived_from](was_derived_from.md) | range | [ProvEntity](ProvEntity.md) | | [Abbreviation](Abbreviation.md) | [was_derived_from](was_derived_from.md) | range | [ProvEntity](ProvEntity.md) | | [MatrixFile](MatrixFile.md) | [was_derived_from](was_derived_from.md) | range | [ProvEntity](ProvEntity.md) | | [ColorPalette](ColorPalette.md) | [was_derived_from](was_derived_from.md) | range | [ProvEntity](ProvEntity.md) | | [DisplayColor](DisplayColor.md) | [was_derived_from](was_derived_from.md) | range | [ProvEntity](ProvEntity.md) | | [SpatialProportions](SpatialProportions.md) | [was_derived_from](was_derived_from.md) | range | [ProvEntity](ProvEntity.md) | | [ProvActivity](ProvActivity.md) | [used](used.md) | range | [ProvEntity](ProvEntity.md) | | [ProvEntity](ProvEntity.md) | [was_derived_from](was_derived_from.md) | range | [ProvEntity](ProvEntity.md) | ## Identifier and Mapping Information ### Schema Source * from schema: https://w3id.org/brain-bican/bke-taxonomy ## Mappings | Mapping Type | Mapped Value | | --- | --- | | self | prov:Entity | | native | bican:ProvEntity | ## LinkML Source ### Direct
name: ProvEntity
description: An entity is a physical, digital, conceptual, or other kind of thing
with some fixed aspects; entities may be real or imaginary.
from_schema: https://w3id.org/brain-bican/bke-taxonomy
mixin: true
slots:
- was_derived_from
- was_generated_by
class_uri: prov:Entity
name: ProvEntity
description: An entity is a physical, digital, conceptual, or other kind of thing
with some fixed aspects; entities may be real or imaginary.
from_schema: https://w3id.org/brain-bican/bke-taxonomy
mixin: true
attributes:
was_derived_from:
name: was_derived_from
description: A derivation is a transformation of an entity into another, an update
of an entity resulting in a new one, or the construction of a new entity based
on a pre-existing entity.
from_schema: https://w3id.org/brain-bican/bke-taxonomy
rank: 1000
slot_uri: prov:wasDerivedFrom
owner: ProvEntity
domain_of:
- CellTypeTaxonomy
- ClusterSet
- ObservationMatrix
- ObservationRow
- ProvEntity
range: ProvEntity
was_generated_by:
name: was_generated_by
description: Generation is the completion of production of a new entity by an
activity. This entity did not exist before generation and becomes available
for usage after this generation.
from_schema: https://w3id.org/brain-bican/bke-taxonomy
rank: 1000
slot_uri: prov:wasGeneratedBy
owner: ProvEntity
domain_of:
- CellTypeTaxonomy
- ClusterSet
- ObservationMatrix
- ProvEntity
range: ProvActivity
class_uri: prov:Entity