Skip to content

Class: ParcellationAnnotation

A parcellation annotation defines a specific segment of an anatomical space denoted by an internal identifier and is a unique and exclusive member of a versioned release anatomical annotation set. For example, in the case where the anatomical annotation set is a single multi-value image mask (e.g. Allen Mouse CCF), a specific annotation corresponds to a specific label index (internal identifier) in the mask.

URI: [bican:ParcellationAnnotation](https://identifiers.org/brain-bican/vocab/ParcellationAnnotation)
classDiagram class ParcellationAnnotation click ParcellationAnnotation href "../ParcellationAnnotation/" ParcellationAnnotation : internal_identifier ParcellationAnnotation : part_of_anatomical_annotation_set ParcellationAnnotation : voxel_count
## Slots | Name | Cardinality and Range | Description | Inheritance | | --- | --- | --- | --- | | [part_of_anatomical_annotation_set](part_of_anatomical_annotation_set.md) | 1
[String](String.md) or 
[AnatomicalAnnotationSet](AnatomicalAnnotationSet.md) | | direct | | [internal_identifier](internal_identifier.md) | 1
[String](String.md) | An identifier that uniquely denotes a specific parcellation annotation within... | direct | | [voxel_count](voxel_count.md) | 0..1
[Integer](Integer.md) | The number of voxels (3D pixels) spanned by the parcellation annotation (opti... | direct | ## Usages | used by | used in | type | used | | --- | --- | --- | --- | | [ParcellationAnnotationTermMap](ParcellationAnnotationTermMap.md) | [subject_parcellation_annotation](subject_parcellation_annotation.md) | any_of[range] | [ParcellationAnnotation](ParcellationAnnotation.md) | ## Identifier and Mapping Information ### Schema Source * from schema: https://w3id.org/brain-bican/bke-taxonomy ## Mappings | Mapping Type | Mapped Value | | --- | --- | | self | bican:ParcellationAnnotation | | native | bican:ParcellationAnnotation | ## LinkML Source ### Direct
name: ParcellationAnnotation
description: A parcellation annotation defines a specific segment of an anatomical
  space denoted by an internal  identifier and is a unique and exclusive member of
  a versioned release anatomical annotation set.  For example, in the case where the
  anatomical annotation set is a single multi-value image mask (e.g. Allen Mouse CCF),
  a specific annotation corresponds to a specific label index (internal identifier)
  in the mask.
from_schema: https://w3id.org/brain-bican/bke-taxonomy
attributes:
  part_of_anatomical_annotation_set:
    name: part_of_anatomical_annotation_set
    from_schema: https://identifiers.org/brain-bican/anatomical-structure-schema
    rank: 1000
    domain_of:
    - ParcellationAnnotation
    required: true
    any_of:
    - range: AnatomicalAnnotationSet
    - range: string
  internal_identifier:
    name: internal_identifier
    description: An identifier that uniquely denotes a specific parcellation annotation
      within the context of an anatomical annotation set
    from_schema: https://identifiers.org/brain-bican/anatomical-structure-schema
    rank: 1000
    domain_of:
    - ParcellationAnnotation
    required: true
  voxel_count:
    name: voxel_count
    description: The number of voxels (3D pixels) spanned by the parcellation annotation
      (optional).
    from_schema: https://identifiers.org/brain-bican/anatomical-structure-schema
    rank: 1000
    domain_of:
    - ParcellationAnnotation
    range: integer
    minimum_value: 0

### Induced
name: ParcellationAnnotation
description: A parcellation annotation defines a specific segment of an anatomical
  space denoted by an internal  identifier and is a unique and exclusive member of
  a versioned release anatomical annotation set.  For example, in the case where the
  anatomical annotation set is a single multi-value image mask (e.g. Allen Mouse CCF),
  a specific annotation corresponds to a specific label index (internal identifier)
  in the mask.
from_schema: https://w3id.org/brain-bican/bke-taxonomy
attributes:
  part_of_anatomical_annotation_set:
    name: part_of_anatomical_annotation_set
    from_schema: https://identifiers.org/brain-bican/anatomical-structure-schema
    rank: 1000
    owner: ParcellationAnnotation
    domain_of:
    - ParcellationAnnotation
    range: string
    required: true
    any_of:
    - range: AnatomicalAnnotationSet
    - range: string
  internal_identifier:
    name: internal_identifier
    description: An identifier that uniquely denotes a specific parcellation annotation
      within the context of an anatomical annotation set
    from_schema: https://identifiers.org/brain-bican/anatomical-structure-schema
    rank: 1000
    owner: ParcellationAnnotation
    domain_of:
    - ParcellationAnnotation
    range: string
    required: true
  voxel_count:
    name: voxel_count
    description: The number of voxels (3D pixels) spanned by the parcellation annotation
      (optional).
    from_schema: https://identifiers.org/brain-bican/anatomical-structure-schema
    rank: 1000
    owner: ParcellationAnnotation
    domain_of:
    - ParcellationAnnotation
    range: integer
    minimum_value: 0