Class: Donor
A person or organism that is the source of a biological sample for scientific study. Many biological samples are generated from a single donor.
URI: [bican:Donor](https://identifiers.org/brain-bican/vocab/Donor)
[LabelType](LabelType.md) | Donor identifier given by the brain bank or the institution that holds the br... | direct | | [xref](xref.md) | *
[Uriorcurie](Uriorcurie.md) | NIMP generated globally unique identifier for a Donor | direct | | [repository](repository.md) | 0..1
[repository](repository.md) | If the brain is from NBB the NBB repository the brain belongs to | direct | | [donor_source](donor_source.md) | 0..1
[donor_source](donor_source.md) | The source of the donor brain e | direct | | [ethnicity](ethnicity.md) | 0..1
[ethnicity](ethnicity.md) | Ethnicity of the donor | direct | | [race](race.md) | 0..1
[race](race.md) | Race of the donor | direct | | [secondary_race](secondary_race.md) | 0..1
[race](race.md) | Second race if available for the donor | direct | | [sex](sex.md) | 0..1
[sex](sex.md) | Donor's sex at birth | direct | | [gender](gender.md) | 0..1
[gender](gender.md) | Donor's gender at death | direct | | [sex_orientation](sex_orientation.md) | 0..1
[SexualOrientation](SexualOrientation.md) | Donor's sexual orientation at death | direct | | [age_of_death](age_of_death.md) | 0..1
[Integer](Integer.md) | Donor's age at death in years | direct | | [birth_country_name](birth_country_name.md) | 0..1
[BirthCountry](BirthCountry.md) | Donor's birth country | direct | | [primary_language](primary_language.md) | 0..1
[Language](Language.md) | Donor's primary language | direct | | [secondary_language](secondary_language.md) | 0..1
[Language](Language.md) | Donor's secondary language | direct | | [marital_status](marital_status.md) | 0..1
[marital_status](marital_status.md) | Donor's marital or partner status | direct | | [education_years_number](education_years_number.md) | 0..1
[Integer](Integer.md) | Number of years of education the donor had | direct | | [handedness](handedness.md) | 0..1
[handedness](handedness.md) | Donor's handedness | direct | | [confirmed_hbcac](confirmed_hbcac.md) | 0..1
[String](String.md) | Confirmation status of meeting inclusion criteria of the Human Brain Cell Atl... | direct | | [age_at_death_value](age_at_death_value.md) | 0..1
[Float](Float.md) | Donor's age at death value | direct | | [age_at_death_unit](age_at_death_unit.md) | 0..1
[String](String.md) | The unit of the value mentioned under "age_at_death_value" | direct | | [age_at_death_reference_point](age_at_death_reference_point.md) | 0..1
[String](String.md) | Reference point from which the donor's age at death was calculated | direct | | [donor_species](donor_species.md) | 0..1
[String](String.md) | NCBI Taxonomy code of the donor species | direct | | [consent_status](consent_status.md) | 0..1
[String](String.md) | Whether the type of consent is open or controlled | direct | | [positive_test_result](positive_test_result.md) | 0..1
[String](String.md) | Whether the donor has had a positive serology test result | direct | | [donor_project](donor_project.md) | 0..1
[String](String.md) | Donor Project | direct | | [donor_labs](donor_labs.md) | 0..1
[String](String.md) | Donor Labs | direct | | [death_causes_data_available](death_causes_data_available.md) | 0..1
[String](String.md) | NIMP indicator for availability of the cause of death | direct | | [rins_data_available](rins_data_available.md) | 0..1
[String](String.md) | NIMP indicator for availability of RNA Integrity Number | direct | | [rines_data_available](rines_data_available.md) | 0..1
[String](String.md) | NIMP indicator for availability of RNA Integrity Number equivalent | direct | | [hemisphere](hemisphere.md) | 0..1
[hemisphere](hemisphere.md) | Hemisphere of the brain | direct | | [post_mortem_interval](post_mortem_interval.md) | 0..1
[Float](Float.md) | Post Mortem Interval in hours | direct | | [left_hemisphere_preparation](left_hemisphere_preparation.md) | 0..1
[Preparation](Preparation.md) | The method of which the left hemisphere of the brain was prepared | direct | | [left_hemisphere_prep_2](left_hemisphere_prep_2.md) | 0..1
[String](String.md) | The second method used to prepare the left hemisphere | direct | | [right_hemisphere_preparation](right_hemisphere_preparation.md) | 0..1
[Preparation](Preparation.md) | The method of which the right hemisphere of the brain was prepared | direct | | [right_hemisphere_prep_2](right_hemisphere_prep_2.md) | 0..1
[String](String.md) | The second method used to prepare the right hemisphere | direct | | [rin](rin.md) | 0..1
[Float](Float.md) | RNA Integrity Number | direct | | [rine](rine.md) | 0..1
[Float](Float.md) | RNA Integrity Number equivalent | direct | | [ph](ph.md) | 0..1
[Float](Float.md) | pH value | direct | | [brain_weight](brain_weight.md) | 0..1
[Integer](Integer.md) | The weight of the brain in grams | direct | | [weighed_type](weighed_type.md) | 0..1
[BrainTissueWeightType](BrainTissueWeightType.md) | The type of the brain tissue weighed based on the preparation | direct | | [photo_2d_available](photo_2d_available.md) | 0..1
[String](String.md) | Is a 2D photograph is available? | direct | | [scan_3d_available](scan_3d_available.md) | 0..1
[String](String.md) | Is a 3D scan is available? | direct | | [antemortem_mri_available](antemortem_mri_available.md) | 0..1
[String](String.md) | Is an Antemortem MRI is available? | direct | | [postmortem_mri_available](postmortem_mri_available.md) | 0..1
[String](String.md) | Is a Postmortem MRI Available | direct | | [postmortem_mri_type](postmortem_mri_type.md) | 0..1
[PostmortemMRI](PostmortemMRI.md) | The type of postmortem MRI if it is available | direct | | [non_brain_specimen_data_available](non_brain_specimen_data_available.md) | 0..1
[String](String.md) | NIMP indicator for availability of non-brain Specimen data | direct | | [neurologic_events_data_available](neurologic_events_data_available.md) | 0..1
[String](String.md) | NIMP indicator for availability of perinatal neurologic events data | direct | | [infectious_testings_data_available](infectious_testings_data_available.md) | 0..1
[String](String.md) | NIMP indicator for availability of infectious Disease/Serology testing data | direct | | [tox_screening_data_available](tox_screening_data_available.md) | 0..1
[String](String.md) | NIMP indicator for availability of toxicology screening data | direct | | [nn_diagnoses_data_available](nn_diagnoses_data_available.md) | 0..1
[String](String.md) | NIMP indicator for availability of non-neuropathological diagnoses data | direct | | [non_brain_tissue_available](non_brain_tissue_available.md) | 0..1
[String](String.md) | Are any non-brain tissues available? | direct | | [tissue_type](tissue_type.md) | 0..1
[Tissue](Tissue.md) | The type of non-brain tissues | direct | | [clinical_brain_diagnosis](clinical_brain_diagnosis.md) | 0..1
[String](String.md) | The ICD-10 code of the clinical brain diagnosis | direct | | [clinical_brain_diagnosis_confidence_level](clinical_brain_diagnosis_confidence_level.md) | 0..1
[ConfidenceLevel](ConfidenceLevel.md) | The confidence level of the clinical brain diagnosis | direct | | [genetic_diagnosis_code](genetic_diagnosis_code.md) | 0..1
[String](String.md) | The ICD-10 code of the genetic diagnosis | direct | | [genetic_diagnosis_confidence_level](genetic_diagnosis_confidence_level.md) | 0..1
[ConfidenceLevel](ConfidenceLevel.md) | The confidence level of the genetic diagnosis | direct | | [non_brain_diagnosis_code](non_brain_diagnosis_code.md) | 0..1
[String](String.md) | The ICD-10 code of the non-brain diagnosis | direct | | [non_brain_diagnosis_confidence_level](non_brain_diagnosis_confidence_level.md) | 0..1
[ConfidenceLevel](ConfidenceLevel.md) | The confidence level of the non-brain diagnosis | direct | | [birth_weight_lbs](birth_weight_lbs.md) | 0..1
[Float](Float.md) | Birth weight in pounds | direct | | [birth_weight_oz](birth_weight_oz.md) | 0..1
[Float](Float.md) | Birth weight in ounces | direct | | [apgar_5_minute_score](apgar_5_minute_score.md) | 0..1
[Integer](Integer.md) | The APGAR Five Minute Score | direct | | [apgar_10_minute_score](apgar_10_minute_score.md) | 0..1
[Integer](Integer.md) | The APGAR Ten Minute Score | direct | | [neuropathology_diagnosis_code](neuropathology_diagnosis_code.md) | 0..1
[String](String.md) | The ICD-10 codes for the neuropathological diagnoses | direct | | [artifacts_type](artifacts_type.md) | 0..1
[ArtifactType](ArtifactType.md) | The type of artifacts | direct | | [developmental_type_specify](developmental_type_specify.md) | 0..1
[String](String.md) | The developmental neuropathology diagnoses specified | direct | | [inflammatory_type_specify](inflammatory_type_specify.md) | 0..1
[String](String.md) | The inflammatory neuropathology diagnoses specified | direct | | [infectious_type_specify](infectious_type_specify.md) | 0..1
[String](String.md) | The infectious neuropathology diagnoses specified | direct | | [traumatic_type](traumatic_type.md) | 0..1
[traumatic_type](traumatic_type.md) | The type of traumatic neuropathology diagnosis | direct | | [vascular_type](vascular_type.md) | 0..1
[vascular_type](vascular_type.md) | The type of vascular neuropathology diagnosis | direct | | [neoplastic_type](neoplastic_type.md) | 0..1
[neoplastic_type](neoplastic_type.md) | The type of neoplastic neuropathology diagnosis | direct | | [aging_type](aging_type.md) | 0..1
[aging_type](aging_type.md) | The type of aging-related neuropathology diagnosis | direct | | [neurodegenerative_type](neurodegenerative_type.md) | 0..1
[neurodegenerative_type](neurodegenerative_type.md) | The type of neurodegenerative neuropathology diagnosis | direct | | [in_taxon](in_taxon.md) | *
[OrganismTaxon](OrganismTaxon.md) | connects an entity to its taxonomic classification | [ThingWithTaxon](ThingWithTaxon.md) | | [in_taxon_label](in_taxon_label.md) | 0..1
[LabelType](LabelType.md) | The human readable scientific name for the taxon of the entity | [ThingWithTaxon](ThingWithTaxon.md) | | [was_derived_from](was_derived_from.md) | 0..1
[ProvEntity](ProvEntity.md) | A derivation is a transformation of an entity into another, an update of an e... | [ProvEntity](ProvEntity.md) | | [was_generated_by](was_generated_by.md) | 0..1
[ProvActivity](ProvActivity.md) | Generation is the completion of production of a new entity by an activity | [ProvEntity](ProvEntity.md) | | [id](id.md) | 1
[String](String.md) | A unique identifier for an entity | [Entity](Entity.md), [PhysicalEntity](PhysicalEntity.md), [NamedThing](NamedThing.md) | | [iri](iri.md) | 0..1
[IriType](IriType.md) | An IRI for an entity | [Entity](Entity.md), [PhysicalEntity](PhysicalEntity.md), [NamedThing](NamedThing.md) | | [type](type.md) | *
[String](String.md) | | [Entity](Entity.md), [PhysicalEntity](PhysicalEntity.md), [NamedThing](NamedThing.md) | | [description](description.md) | 0..1
[NarrativeText](NarrativeText.md) | a human-readable description of an entity | [Entity](Entity.md), [PhysicalEntity](PhysicalEntity.md), [NamedThing](NamedThing.md) | | [has_attribute](has_attribute.md) | *
[Attribute](Attribute.md) | connects any entity to an attribute | [Entity](Entity.md), [PhysicalEntity](PhysicalEntity.md), [NamedThing](NamedThing.md) | | [deprecated](deprecated.md) | 0..1
[Boolean](Boolean.md) | A boolean flag indicating that an entity is no longer considered current or v... | [Entity](Entity.md), [PhysicalEntity](PhysicalEntity.md), [NamedThing](NamedThing.md) | | [provided_by](provided_by.md) | *
[String](String.md) | The value in this node property represents the knowledge provider that create... | [PhysicalEntity](PhysicalEntity.md), [NamedThing](NamedThing.md) | | [full_name](full_name.md) | 0..1
[LabelType](LabelType.md) | a long-form human readable name for a thing | [PhysicalEntity](PhysicalEntity.md), [NamedThing](NamedThing.md) | | [synonym](synonym.md) | *
[LabelType](LabelType.md) | Alternate human-readable names for a thing | [PhysicalEntity](PhysicalEntity.md), [NamedThing](NamedThing.md) | | [information_content](information_content.md) | 0..1
[Float](Float.md) | Information content (IC) value for a term, primarily from Automats | [PhysicalEntity](PhysicalEntity.md), [NamedThing](NamedThing.md) | | [equivalent_identifiers](equivalent_identifiers.md) | *
[Uriorcurie](Uriorcurie.md) | A set of identifiers that are considered equivalent to the primary identifier... | [PhysicalEntity](PhysicalEntity.md), [NamedThing](NamedThing.md) | | [named_thing_category](named_thing_category.md) | 1..*
[Uriorcurie](Uriorcurie.md) | Name of the high level ontology class in which this entity is categorized | [PhysicalEntity](PhysicalEntity.md), [NamedThing](NamedThing.md) | | [category](category.md) | 1..*
[Uriorcurie](Uriorcurie.md) | Name of the high level ontology class in which this entity is categorized | [Entity](Entity.md) | ## Identifier and Mapping Information ### Schema Source * from schema: https://w3id.org/brain-bican/donor ## Mappings | Mapping Type | Mapped Value | | --- | --- | | self | bican:Donor | | native | bican:Donor | | exact | NIMP:Donor | ## LinkML Source ### Direct
### Induced
classDiagram
class Donor
click Donor href "../Donor/"
ThingWithTaxon <|-- Donor
click ThingWithTaxon href "../ThingWithTaxon/"
ProvEntity <|-- Donor
click ProvEntity href "../ProvEntity/"
PhysicalEntity <|-- Donor
click PhysicalEntity href "../PhysicalEntity/"
Donor : age_at_death_reference_point
Donor : age_at_death_unit
Donor : age_at_death_value
Donor : age_of_death
Donor : aging_type
Donor --> "0..1" aging_type : aging_type
click aging_type href "../aging_type/"
Donor : antemortem_mri_available
Donor : apgar_10_minute_score
Donor : apgar_5_minute_score
Donor : artifacts_type
Donor --> "0..1" ArtifactType : artifacts_type
click ArtifactType href "../ArtifactType/"
Donor : birth_country_name
Donor --> "0..1" BirthCountry : birth_country_name
click BirthCountry href "../BirthCountry/"
Donor : birth_weight_lbs
Donor : birth_weight_oz
Donor : brain_weight
Donor : category
Donor : clinical_brain_diagnosis
Donor : clinical_brain_diagnosis_confidence_level
Donor --> "0..1" ConfidenceLevel : clinical_brain_diagnosis_confidence_level
click ConfidenceLevel href "../ConfidenceLevel/"
Donor : confirmed_hbcac
Donor : consent_status
Donor : death_causes_data_available
Donor : deprecated
Donor : description
Donor : developmental_type_specify
Donor : donor_labs
Donor : donor_project
Donor : donor_source
Donor --> "0..1" donor_source : donor_source
click donor_source href "../donor_source/"
Donor : donor_species
Donor : education_years_number
Donor : equivalent_identifiers
Donor : ethnicity
Donor --> "0..1" ethnicity : ethnicity
click ethnicity href "../ethnicity/"
Donor : full_name
Donor : gender
Donor --> "0..1" gender : gender
click gender href "../gender/"
Donor : genetic_diagnosis_code
Donor : genetic_diagnosis_confidence_level
Donor --> "0..1" ConfidenceLevel : genetic_diagnosis_confidence_level
click ConfidenceLevel href "../ConfidenceLevel/"
Donor : handedness
Donor --> "0..1" handedness : handedness
click handedness href "../handedness/"
Donor : has_attribute
Donor --> "*" Attribute : has_attribute
click Attribute href "../Attribute/"
Donor : hemisphere
Donor --> "0..1" hemisphere : hemisphere
click hemisphere href "../hemisphere/"
Donor : id
Donor : in_taxon
Donor --> "*" OrganismTaxon : in_taxon
click OrganismTaxon href "../OrganismTaxon/"
Donor : in_taxon_label
Donor : infectious_testings_data_available
Donor : infectious_type_specify
Donor : inflammatory_type_specify
Donor : information_content
Donor : iri
Donor : left_hemisphere_prep_2
Donor : left_hemisphere_preparation
Donor --> "0..1" Preparation : left_hemisphere_preparation
click Preparation href "../Preparation/"
Donor : marital_status
Donor --> "0..1" marital_status : marital_status
click marital_status href "../marital_status/"
Donor : name
Donor : named_thing_category
Donor : neoplastic_type
Donor --> "0..1" neoplastic_type : neoplastic_type
click neoplastic_type href "../neoplastic_type/"
Donor : neurodegenerative_type
Donor --> "0..1" neurodegenerative_type : neurodegenerative_type
click neurodegenerative_type href "../neurodegenerative_type/"
Donor : neurologic_events_data_available
Donor : neuropathology_diagnosis_code
Donor : nn_diagnoses_data_available
Donor : non_brain_diagnosis_code
Donor : non_brain_diagnosis_confidence_level
Donor --> "0..1" ConfidenceLevel : non_brain_diagnosis_confidence_level
click ConfidenceLevel href "../ConfidenceLevel/"
Donor : non_brain_specimen_data_available
Donor : non_brain_tissue_available
Donor : ph
Donor : photo_2d_available
Donor : positive_test_result
Donor : post_mortem_interval
Donor : postmortem_mri_available
Donor : postmortem_mri_type
Donor --> "0..1" PostmortemMRI : postmortem_mri_type
click PostmortemMRI href "../PostmortemMRI/"
Donor : primary_language
Donor --> "0..1" Language : primary_language
click Language href "../Language/"
Donor : provided_by
Donor : race
Donor --> "0..1" race : race
click race href "../race/"
Donor : repository
Donor --> "0..1" repository : repository
click repository href "../repository/"
Donor : right_hemisphere_prep_2
Donor : right_hemisphere_preparation
Donor --> "0..1" Preparation : right_hemisphere_preparation
click Preparation href "../Preparation/"
Donor : rin
Donor : rine
Donor : rines_data_available
Donor : rins_data_available
Donor : scan_3d_available
Donor : secondary_language
Donor --> "0..1" Language : secondary_language
click Language href "../Language/"
Donor : secondary_race
Donor --> "0..1" race : secondary_race
click race href "../race/"
Donor : sex
Donor --> "0..1" sex : sex
click sex href "../sex/"
Donor : sex_orientation
Donor --> "0..1" SexualOrientation : sex_orientation
click SexualOrientation href "../SexualOrientation/"
Donor : synonym
Donor : tissue_type
Donor --> "0..1" Tissue : tissue_type
click Tissue href "../Tissue/"
Donor : tox_screening_data_available
Donor : traumatic_type
Donor --> "0..1" traumatic_type : traumatic_type
click traumatic_type href "../traumatic_type/"
Donor : type
Donor : vascular_type
Donor --> "0..1" vascular_type : vascular_type
click vascular_type href "../vascular_type/"
Donor : was_derived_from
Donor --> "0..1" ProvEntity : was_derived_from
click ProvEntity href "../ProvEntity/"
Donor : was_generated_by
Donor --> "0..1" ProvActivity : was_generated_by
click ProvActivity href "../ProvActivity/"
Donor : weighed_type
Donor --> "0..1" BrainTissueWeightType : weighed_type
click BrainTissueWeightType href "../BrainTissueWeightType/"
Donor : xref
## Inheritance
* [Entity](Entity.md)
* [NamedThing](NamedThing.md)
* [PhysicalEntity](PhysicalEntity.md) [ [PhysicalEssence](PhysicalEssence.md)]
* **Donor** [ [ThingWithTaxon](ThingWithTaxon.md) [ProvEntity](ProvEntity.md)]
## Slots
| Name | Cardinality and Range | Description | Inheritance |
| --- | --- | --- | --- |
| [name](name.md) | 0..1 [LabelType](LabelType.md) | Donor identifier given by the brain bank or the institution that holds the br... | direct | | [xref](xref.md) | *
[Uriorcurie](Uriorcurie.md) | NIMP generated globally unique identifier for a Donor | direct | | [repository](repository.md) | 0..1
[repository](repository.md) | If the brain is from NBB the NBB repository the brain belongs to | direct | | [donor_source](donor_source.md) | 0..1
[donor_source](donor_source.md) | The source of the donor brain e | direct | | [ethnicity](ethnicity.md) | 0..1
[ethnicity](ethnicity.md) | Ethnicity of the donor | direct | | [race](race.md) | 0..1
[race](race.md) | Race of the donor | direct | | [secondary_race](secondary_race.md) | 0..1
[race](race.md) | Second race if available for the donor | direct | | [sex](sex.md) | 0..1
[sex](sex.md) | Donor's sex at birth | direct | | [gender](gender.md) | 0..1
[gender](gender.md) | Donor's gender at death | direct | | [sex_orientation](sex_orientation.md) | 0..1
[SexualOrientation](SexualOrientation.md) | Donor's sexual orientation at death | direct | | [age_of_death](age_of_death.md) | 0..1
[Integer](Integer.md) | Donor's age at death in years | direct | | [birth_country_name](birth_country_name.md) | 0..1
[BirthCountry](BirthCountry.md) | Donor's birth country | direct | | [primary_language](primary_language.md) | 0..1
[Language](Language.md) | Donor's primary language | direct | | [secondary_language](secondary_language.md) | 0..1
[Language](Language.md) | Donor's secondary language | direct | | [marital_status](marital_status.md) | 0..1
[marital_status](marital_status.md) | Donor's marital or partner status | direct | | [education_years_number](education_years_number.md) | 0..1
[Integer](Integer.md) | Number of years of education the donor had | direct | | [handedness](handedness.md) | 0..1
[handedness](handedness.md) | Donor's handedness | direct | | [confirmed_hbcac](confirmed_hbcac.md) | 0..1
[String](String.md) | Confirmation status of meeting inclusion criteria of the Human Brain Cell Atl... | direct | | [age_at_death_value](age_at_death_value.md) | 0..1
[Float](Float.md) | Donor's age at death value | direct | | [age_at_death_unit](age_at_death_unit.md) | 0..1
[String](String.md) | The unit of the value mentioned under "age_at_death_value" | direct | | [age_at_death_reference_point](age_at_death_reference_point.md) | 0..1
[String](String.md) | Reference point from which the donor's age at death was calculated | direct | | [donor_species](donor_species.md) | 0..1
[String](String.md) | NCBI Taxonomy code of the donor species | direct | | [consent_status](consent_status.md) | 0..1
[String](String.md) | Whether the type of consent is open or controlled | direct | | [positive_test_result](positive_test_result.md) | 0..1
[String](String.md) | Whether the donor has had a positive serology test result | direct | | [donor_project](donor_project.md) | 0..1
[String](String.md) | Donor Project | direct | | [donor_labs](donor_labs.md) | 0..1
[String](String.md) | Donor Labs | direct | | [death_causes_data_available](death_causes_data_available.md) | 0..1
[String](String.md) | NIMP indicator for availability of the cause of death | direct | | [rins_data_available](rins_data_available.md) | 0..1
[String](String.md) | NIMP indicator for availability of RNA Integrity Number | direct | | [rines_data_available](rines_data_available.md) | 0..1
[String](String.md) | NIMP indicator for availability of RNA Integrity Number equivalent | direct | | [hemisphere](hemisphere.md) | 0..1
[hemisphere](hemisphere.md) | Hemisphere of the brain | direct | | [post_mortem_interval](post_mortem_interval.md) | 0..1
[Float](Float.md) | Post Mortem Interval in hours | direct | | [left_hemisphere_preparation](left_hemisphere_preparation.md) | 0..1
[Preparation](Preparation.md) | The method of which the left hemisphere of the brain was prepared | direct | | [left_hemisphere_prep_2](left_hemisphere_prep_2.md) | 0..1
[String](String.md) | The second method used to prepare the left hemisphere | direct | | [right_hemisphere_preparation](right_hemisphere_preparation.md) | 0..1
[Preparation](Preparation.md) | The method of which the right hemisphere of the brain was prepared | direct | | [right_hemisphere_prep_2](right_hemisphere_prep_2.md) | 0..1
[String](String.md) | The second method used to prepare the right hemisphere | direct | | [rin](rin.md) | 0..1
[Float](Float.md) | RNA Integrity Number | direct | | [rine](rine.md) | 0..1
[Float](Float.md) | RNA Integrity Number equivalent | direct | | [ph](ph.md) | 0..1
[Float](Float.md) | pH value | direct | | [brain_weight](brain_weight.md) | 0..1
[Integer](Integer.md) | The weight of the brain in grams | direct | | [weighed_type](weighed_type.md) | 0..1
[BrainTissueWeightType](BrainTissueWeightType.md) | The type of the brain tissue weighed based on the preparation | direct | | [photo_2d_available](photo_2d_available.md) | 0..1
[String](String.md) | Is a 2D photograph is available? | direct | | [scan_3d_available](scan_3d_available.md) | 0..1
[String](String.md) | Is a 3D scan is available? | direct | | [antemortem_mri_available](antemortem_mri_available.md) | 0..1
[String](String.md) | Is an Antemortem MRI is available? | direct | | [postmortem_mri_available](postmortem_mri_available.md) | 0..1
[String](String.md) | Is a Postmortem MRI Available | direct | | [postmortem_mri_type](postmortem_mri_type.md) | 0..1
[PostmortemMRI](PostmortemMRI.md) | The type of postmortem MRI if it is available | direct | | [non_brain_specimen_data_available](non_brain_specimen_data_available.md) | 0..1
[String](String.md) | NIMP indicator for availability of non-brain Specimen data | direct | | [neurologic_events_data_available](neurologic_events_data_available.md) | 0..1
[String](String.md) | NIMP indicator for availability of perinatal neurologic events data | direct | | [infectious_testings_data_available](infectious_testings_data_available.md) | 0..1
[String](String.md) | NIMP indicator for availability of infectious Disease/Serology testing data | direct | | [tox_screening_data_available](tox_screening_data_available.md) | 0..1
[String](String.md) | NIMP indicator for availability of toxicology screening data | direct | | [nn_diagnoses_data_available](nn_diagnoses_data_available.md) | 0..1
[String](String.md) | NIMP indicator for availability of non-neuropathological diagnoses data | direct | | [non_brain_tissue_available](non_brain_tissue_available.md) | 0..1
[String](String.md) | Are any non-brain tissues available? | direct | | [tissue_type](tissue_type.md) | 0..1
[Tissue](Tissue.md) | The type of non-brain tissues | direct | | [clinical_brain_diagnosis](clinical_brain_diagnosis.md) | 0..1
[String](String.md) | The ICD-10 code of the clinical brain diagnosis | direct | | [clinical_brain_diagnosis_confidence_level](clinical_brain_diagnosis_confidence_level.md) | 0..1
[ConfidenceLevel](ConfidenceLevel.md) | The confidence level of the clinical brain diagnosis | direct | | [genetic_diagnosis_code](genetic_diagnosis_code.md) | 0..1
[String](String.md) | The ICD-10 code of the genetic diagnosis | direct | | [genetic_diagnosis_confidence_level](genetic_diagnosis_confidence_level.md) | 0..1
[ConfidenceLevel](ConfidenceLevel.md) | The confidence level of the genetic diagnosis | direct | | [non_brain_diagnosis_code](non_brain_diagnosis_code.md) | 0..1
[String](String.md) | The ICD-10 code of the non-brain diagnosis | direct | | [non_brain_diagnosis_confidence_level](non_brain_diagnosis_confidence_level.md) | 0..1
[ConfidenceLevel](ConfidenceLevel.md) | The confidence level of the non-brain diagnosis | direct | | [birth_weight_lbs](birth_weight_lbs.md) | 0..1
[Float](Float.md) | Birth weight in pounds | direct | | [birth_weight_oz](birth_weight_oz.md) | 0..1
[Float](Float.md) | Birth weight in ounces | direct | | [apgar_5_minute_score](apgar_5_minute_score.md) | 0..1
[Integer](Integer.md) | The APGAR Five Minute Score | direct | | [apgar_10_minute_score](apgar_10_minute_score.md) | 0..1
[Integer](Integer.md) | The APGAR Ten Minute Score | direct | | [neuropathology_diagnosis_code](neuropathology_diagnosis_code.md) | 0..1
[String](String.md) | The ICD-10 codes for the neuropathological diagnoses | direct | | [artifacts_type](artifacts_type.md) | 0..1
[ArtifactType](ArtifactType.md) | The type of artifacts | direct | | [developmental_type_specify](developmental_type_specify.md) | 0..1
[String](String.md) | The developmental neuropathology diagnoses specified | direct | | [inflammatory_type_specify](inflammatory_type_specify.md) | 0..1
[String](String.md) | The inflammatory neuropathology diagnoses specified | direct | | [infectious_type_specify](infectious_type_specify.md) | 0..1
[String](String.md) | The infectious neuropathology diagnoses specified | direct | | [traumatic_type](traumatic_type.md) | 0..1
[traumatic_type](traumatic_type.md) | The type of traumatic neuropathology diagnosis | direct | | [vascular_type](vascular_type.md) | 0..1
[vascular_type](vascular_type.md) | The type of vascular neuropathology diagnosis | direct | | [neoplastic_type](neoplastic_type.md) | 0..1
[neoplastic_type](neoplastic_type.md) | The type of neoplastic neuropathology diagnosis | direct | | [aging_type](aging_type.md) | 0..1
[aging_type](aging_type.md) | The type of aging-related neuropathology diagnosis | direct | | [neurodegenerative_type](neurodegenerative_type.md) | 0..1
[neurodegenerative_type](neurodegenerative_type.md) | The type of neurodegenerative neuropathology diagnosis | direct | | [in_taxon](in_taxon.md) | *
[OrganismTaxon](OrganismTaxon.md) | connects an entity to its taxonomic classification | [ThingWithTaxon](ThingWithTaxon.md) | | [in_taxon_label](in_taxon_label.md) | 0..1
[LabelType](LabelType.md) | The human readable scientific name for the taxon of the entity | [ThingWithTaxon](ThingWithTaxon.md) | | [was_derived_from](was_derived_from.md) | 0..1
[ProvEntity](ProvEntity.md) | A derivation is a transformation of an entity into another, an update of an e... | [ProvEntity](ProvEntity.md) | | [was_generated_by](was_generated_by.md) | 0..1
[ProvActivity](ProvActivity.md) | Generation is the completion of production of a new entity by an activity | [ProvEntity](ProvEntity.md) | | [id](id.md) | 1
[String](String.md) | A unique identifier for an entity | [Entity](Entity.md), [PhysicalEntity](PhysicalEntity.md), [NamedThing](NamedThing.md) | | [iri](iri.md) | 0..1
[IriType](IriType.md) | An IRI for an entity | [Entity](Entity.md), [PhysicalEntity](PhysicalEntity.md), [NamedThing](NamedThing.md) | | [type](type.md) | *
[String](String.md) | | [Entity](Entity.md), [PhysicalEntity](PhysicalEntity.md), [NamedThing](NamedThing.md) | | [description](description.md) | 0..1
[NarrativeText](NarrativeText.md) | a human-readable description of an entity | [Entity](Entity.md), [PhysicalEntity](PhysicalEntity.md), [NamedThing](NamedThing.md) | | [has_attribute](has_attribute.md) | *
[Attribute](Attribute.md) | connects any entity to an attribute | [Entity](Entity.md), [PhysicalEntity](PhysicalEntity.md), [NamedThing](NamedThing.md) | | [deprecated](deprecated.md) | 0..1
[Boolean](Boolean.md) | A boolean flag indicating that an entity is no longer considered current or v... | [Entity](Entity.md), [PhysicalEntity](PhysicalEntity.md), [NamedThing](NamedThing.md) | | [provided_by](provided_by.md) | *
[String](String.md) | The value in this node property represents the knowledge provider that create... | [PhysicalEntity](PhysicalEntity.md), [NamedThing](NamedThing.md) | | [full_name](full_name.md) | 0..1
[LabelType](LabelType.md) | a long-form human readable name for a thing | [PhysicalEntity](PhysicalEntity.md), [NamedThing](NamedThing.md) | | [synonym](synonym.md) | *
[LabelType](LabelType.md) | Alternate human-readable names for a thing | [PhysicalEntity](PhysicalEntity.md), [NamedThing](NamedThing.md) | | [information_content](information_content.md) | 0..1
[Float](Float.md) | Information content (IC) value for a term, primarily from Automats | [PhysicalEntity](PhysicalEntity.md), [NamedThing](NamedThing.md) | | [equivalent_identifiers](equivalent_identifiers.md) | *
[Uriorcurie](Uriorcurie.md) | A set of identifiers that are considered equivalent to the primary identifier... | [PhysicalEntity](PhysicalEntity.md), [NamedThing](NamedThing.md) | | [named_thing_category](named_thing_category.md) | 1..*
[Uriorcurie](Uriorcurie.md) | Name of the high level ontology class in which this entity is categorized | [PhysicalEntity](PhysicalEntity.md), [NamedThing](NamedThing.md) | | [category](category.md) | 1..*
[Uriorcurie](Uriorcurie.md) | Name of the high level ontology class in which this entity is categorized | [Entity](Entity.md) | ## Identifier and Mapping Information ### Schema Source * from schema: https://w3id.org/brain-bican/donor ## Mappings | Mapping Type | Mapped Value | | --- | --- | | self | bican:Donor | | native | bican:Donor | | exact | NIMP:Donor | ## LinkML Source ### Direct
name: Donor
description: A person or organism that is the source of a biological sample for scientific
study. Many biological samples are generated from a single donor.
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- NIMP:Donor
is_a: physical entity
mixins:
- thing with taxon
- ProvEntity
slots:
- name
- xref
slot_usage:
name:
name: name
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: donor_local_name
description: Donor identifier given by the brain bank or the institution that
holds the brain
exact_mappings:
- bican:f8af20f7-e8b8-47b5-8a68-9ec1f913ffdf
- NIMP:PD-QLQLFB34
xref:
name: xref
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: donor_nhash_id
description: NIMP generated globally unique identifier for a Donor
exact_mappings:
- bican:98b28574-f97f-4436-b723-10a6508431b5
- NIMP:PD-DEXRDO36
attributes:
repository:
name: repository
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: repository
description: If the brain is from NBB the NBB repository the brain belongs to
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:408682ed-0e27-41e2-b9fa-f05674366d6e
- NIMP:PD-NYNYAR61
rank: 1000
domain_of:
- Donor
range: repository
donor_source:
name: donor_source
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: donor_source
description: The source of the donor brain e.g. NBB/UM1 project/other
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:0d0cf732-0f76-409d-9a73-7a96d829d3d3
- NIMP:PD-TPTPPS27
rank: 1000
domain_of:
- Donor
range: donor_source
ethnicity:
name: ethnicity
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: ethnicity
description: Ethnicity of the donor
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:918370df-49f6-4361-9c52-f46b16412980
- NIMP:PD-JEJECK48
rank: 1000
domain_of:
- Donor
range: ethnicity
race:
name: race
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: race
description: Race of the donor
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:e515c009-550e-4f9c-b1b6-fc876a6fb2a8
- NIMP:PD-PRPRRP41
rank: 1000
domain_of:
- Donor
range: race
secondary_race:
name: secondary_race
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: second_race
description: Second race if available for the donor
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:192fe5b1-c812-4767-86fb-3178f9914705
- NIMP:PD-SESEQB42
rank: 1000
domain_of:
- Donor
range: race
sex:
name: sex
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: sex
description: Donor's sex at birth
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:c819b9d5-2fde-40b2-bf0d-e07b56f96ac9
- NIMP:PD-LXUBTM45
rank: 1000
domain_of:
- Donor
range: sex
gender:
name: gender
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: gender
description: Donor's gender at death
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:1c71e775-65aa-442b-a392-1cf9a44e326e
- NIMP:PD-KLKLJH33
rank: 1000
domain_of:
- Donor
range: gender
sex_orientation:
name: sex_orientation
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: sex_orientation
description: Donor's sexual orientation at death
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:e47e8a2f-72fb-4036-b288-f4580dc2aa4e
- NIMP:PD-HKHGTM45
rank: 1000
domain_of:
- Donor
range: sexual_orientation
age_of_death:
name: age_of_death
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: age_of_death
description: Donor's age at death in years
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:14eb923a-161d-45e2-889d-81fea7b632b6
- NIMP:PD-FTEMQD38
rank: 1000
domain_of:
- Donor
range: integer
minimum_value: '0.0'
maximum_value: '200.0'
unit:
ucum_code: a
birth_country_name:
name: birth_country_name
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: birth_country_name
description: Donor's birth country
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:9c27fd29-b512-492f-a32f-b615c7585ff7
- NIMP:PD-SQSQDF25
rank: 1000
domain_of:
- Donor
range: birth_country
primary_language:
name: primary_language
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: primary_language
description: Donor's primary language
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:abe9edc7-96ca-4c6a-a1ed-c008548cc373
- NIMP:PD-ATEVEV39
rank: 1000
domain_of:
- Donor
range: language
secondary_language:
name: secondary_language
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: secondary_language
description: Donor's secondary language
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:37b7495f-b010-4d1c-ae32-9cb19c680950
- NIMP:PD-OBIUQB42
rank: 1000
domain_of:
- Donor
range: language
marital_status:
name: marital_status
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: marital_status
description: Donor's marital or partner status
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:4f0e41c9-dd15-4a37-ae6b-11b7131d7cba
- NIMP:PD-JCYJCN35
rank: 1000
domain_of:
- Donor
range: marital_status
education_years_number:
name: education_years_number
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: education_years_number
description: Number of years of education the donor had
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:add3f7fe-ae60-4cc1-bb2e-72bbbe9a1a7d
- NIMP:PD-SJSJRC41
rank: 1000
domain_of:
- Donor
range: integer
minimum_value: '0.0'
maximum_value: '30.0'
unit:
ucum_code: a
handedness:
name: handedness
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: handedness
description: Donor's handedness
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:82a4087c-d0e3-48ca-8bea-a81eefc683a0
- NIMP:PD-WGWGTM45
rank: 1000
domain_of:
- Donor
range: handedness
confirmed_hbcac:
name: confirmed_hbcac
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: confirmed_hbcac
description: Confirmation status of meeting inclusion criteria of the Human Brain
Cell Atlas Collection at NBB
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:b6cdddf7-6f0b-4855-a0fa-16c2ab29f219
- NIMP:PD-YBLATM45
rank: 1000
domain_of:
- Donor
range: string
age_at_death_value:
name: age_at_death_value
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: age_at_death_value
description: Donor's age at death value
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:57e24d3c-c9c7-4ef3-9809-a35802d563ec
- NIMP:PD-FTFTCP24
rank: 1000
domain_of:
- Donor
range: float
age_at_death_unit:
name: age_at_death_unit
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: age_at_death_unit
description: The unit of the value mentioned under "age_at_death_value"
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:b5436e99-f0a7-4c30-825d-56b88ee2ac1d
- NIMP:PD-AVAVEV39
rank: 1000
domain_of:
- Donor
range: string
age_at_death_reference_point:
name: age_at_death_reference_point
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: age_at_death_reference_point
description: Reference point from which the donor's age at death was calculated
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:3bed1f94-9d82-4ed7-afdf-79d896b24dbb
- NIMP:PD-RARAGG39
rank: 1000
domain_of:
- Donor
range: string
donor_species:
name: donor_species
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: donor_species
description: NCBI Taxonomy code of the donor species
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:6837cb02-6bd7-4fb8-838c-9062ead96ba4
- NIMP:PD-HEHERP41
rank: 1000
domain_of:
- Donor
range: string
consent_status:
name: consent_status
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: consent_status
description: Whether the type of consent is open or controlled
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:1a53e733-276f-421a-850d-eb46e50db972
- NIMP:PD-CBCBWQ40
rank: 1000
domain_of:
- Donor
range: string
positive_test_result:
name: positive_test_result
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: positive_test_result
description: Whether the donor has had a positive serology test result
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:0ef73629-5172-4517-a1f8-295be1603b80
- NIMP:PD-PDZDNL63
rank: 1000
domain_of:
- Donor
range: string
donor_project:
name: donor_project
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: donor_project
description: Donor Project
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:cd772fb0-a2fe-4df3-b2dd-b62370be37fc
- NIMP:PD-HEHEQB42
rank: 1000
domain_of:
- Donor
range: string
donor_labs:
name: donor_labs
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: donor_labs
description: Donor Labs
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:b97c384f-a556-42a2-a3c2-c31e5771f481
- NIMP:PD-APAPRP41
rank: 1000
domain_of:
- Donor
range: string
death_causes_data_available:
name: death_causes_data_available
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: death_causes_data_available
description: NIMP indicator for availability of the cause of death
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:e46e9d58-d982-4800-b7de-67f608951211
- NIMP:PD-FYUCNY46
rank: 1000
domain_of:
- Donor
range: string
rins_data_available:
name: rins_data_available
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: rins_data_available
description: NIMP indicator for availability of RNA Integrity Number
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:d05825e6-b785-42a3-9bdf-c34b30e698b8
- NIMP:PD-JRJCAR61
rank: 1000
domain_of:
- Donor
range: string
rines_data_available:
name: rines_data_available
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: rines_data_available
description: NIMP indicator for availability of RNA Integrity Number equivalent
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:28a5e912-570b-4a7f-87f2-36bd5db92090
- NIMP:PD-CJRWAR61
rank: 1000
domain_of:
- Donor
range: string
hemisphere:
name: hemisphere
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
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local_name_value: hemisphere
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exact_mappings:
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- NIMP:PD-JRJRFQ31
rank: 1000
domain_of:
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range: hemisphere
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local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: post_mortem_interval
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from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
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- NIMP:PD-CHCHLC46
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domain_of:
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minimum_value: '0.0'
maximum_value: '8888.0'
unit:
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NIMP_resource_type:
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local_name_value: Donor
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domain_of:
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local_name_value: Donor
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rank: 1000
domain_of:
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rin:
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local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: rin
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local_name_value: Donor
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local_name_value: rine
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local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: ph
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local_name_value: Donor
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local_name_source: NIMP_variable_name
local_name_value: photo_2d_available
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local_name_value: Donor
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local_name_value: Donor
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local_name_value: Donor
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local_name_value: Donor
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local_name_value: Donor
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local_name_value: Donor
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local_name_value: Donor
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local_name_value: Donor
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rank: 1000
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range: tissue
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exact_mappings:
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local_name_value: Donor
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exact_mappings:
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local_name_value: Donor
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in_subset:
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exact_mappings:
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local_name_value: Donor
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in_subset:
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exact_mappings:
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exact_mappings:
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local_name_value: Donor
NIMP_variable_name:
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exact_mappings:
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range: float
minimum_value: '0.0'
maximum_value: '100.0'
unit:
ucum_code: '[lb_av]'
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local_name_value: Donor
NIMP_variable_name:
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exact_mappings:
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domain_of:
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local_name_value: Donor
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exact_mappings:
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domain_of:
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artifacts_type:
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local_name_value: Donor
NIMP_variable_name:
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local_name_value: artifacts_type
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domain_of:
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local_name_value: Donor
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exact_mappings:
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domain_of:
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local_name_value: Donor
NIMP_variable_name:
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local_name_value: inflammatory_type_specify
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exact_mappings:
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domain_of:
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local_name_value: Donor
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from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
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domain_of:
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range: string
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local_name_value: Donor
NIMP_variable_name:
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domain_of:
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vascular_type:
name: vascular_type
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: vascular_type
description: The type of vascular neuropathology diagnosis
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:5beafa90-ffdb-4cce-a78c-a3b3175210b6
- NIMP:PD-RIRITM45
rank: 1000
domain_of:
- Donor
range: vascular_type
neoplastic_type:
name: neoplastic_type
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: neoplastic_type
description: The type of neoplastic neuropathology diagnosis
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:a58be8f4-2756-4a66-9d05-1fbf44b4e810
- NIMP:PD-NENERZ37
rank: 1000
domain_of:
- Donor
range: neoplastic_type
aging_type:
name: aging_type
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: aging_type
description: The type of aging-related neuropathology diagnosis
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:5e31b66f-131e-4d5e-8760-ddd85f5634d5
- NIMP:PD-WNWNRC24
rank: 1000
domain_of:
- Donor
range: aging_type
neurodegenerative_type:
name: neurodegenerative_type
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: neurodegenerative_type
description: The type of neurodegenerative neuropathology diagnosis
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:b150b62c-a968-4f5d-9aa3-d1ab5207ff83
- NIMP:PD-PEPERZ37
rank: 1000
domain_of:
- Donor
range: neurodegenerative_type
name: Donor
description: A person or organism that is the source of a biological sample for scientific
study. Many biological samples are generated from a single donor.
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- NIMP:Donor
is_a: physical entity
mixins:
- thing with taxon
- ProvEntity
slot_usage:
name:
name: name
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: donor_local_name
description: Donor identifier given by the brain bank or the institution that
holds the brain
exact_mappings:
- bican:f8af20f7-e8b8-47b5-8a68-9ec1f913ffdf
- NIMP:PD-QLQLFB34
xref:
name: xref
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: donor_nhash_id
description: NIMP generated globally unique identifier for a Donor
exact_mappings:
- bican:98b28574-f97f-4436-b723-10a6508431b5
- NIMP:PD-DEXRDO36
attributes:
repository:
name: repository
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: repository
description: If the brain is from NBB the NBB repository the brain belongs to
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:408682ed-0e27-41e2-b9fa-f05674366d6e
- NIMP:PD-NYNYAR61
rank: 1000
owner: Donor
domain_of:
- Donor
range: repository
donor_source:
name: donor_source
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: donor_source
description: The source of the donor brain e.g. NBB/UM1 project/other
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:0d0cf732-0f76-409d-9a73-7a96d829d3d3
- NIMP:PD-TPTPPS27
rank: 1000
owner: Donor
domain_of:
- Donor
range: donor_source
ethnicity:
name: ethnicity
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: ethnicity
description: Ethnicity of the donor
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:918370df-49f6-4361-9c52-f46b16412980
- NIMP:PD-JEJECK48
rank: 1000
owner: Donor
domain_of:
- Donor
range: ethnicity
race:
name: race
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: race
description: Race of the donor
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:e515c009-550e-4f9c-b1b6-fc876a6fb2a8
- NIMP:PD-PRPRRP41
rank: 1000
owner: Donor
domain_of:
- Donor
range: race
secondary_race:
name: secondary_race
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: second_race
description: Second race if available for the donor
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:192fe5b1-c812-4767-86fb-3178f9914705
- NIMP:PD-SESEQB42
rank: 1000
owner: Donor
domain_of:
- Donor
range: race
sex:
name: sex
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: sex
description: Donor's sex at birth
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:c819b9d5-2fde-40b2-bf0d-e07b56f96ac9
- NIMP:PD-LXUBTM45
rank: 1000
owner: Donor
domain_of:
- Donor
range: sex
gender:
name: gender
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: gender
description: Donor's gender at death
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:1c71e775-65aa-442b-a392-1cf9a44e326e
- NIMP:PD-KLKLJH33
rank: 1000
owner: Donor
domain_of:
- Donor
range: gender
sex_orientation:
name: sex_orientation
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: sex_orientation
description: Donor's sexual orientation at death
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:e47e8a2f-72fb-4036-b288-f4580dc2aa4e
- NIMP:PD-HKHGTM45
rank: 1000
owner: Donor
domain_of:
- Donor
range: sexual_orientation
age_of_death:
name: age_of_death
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: age_of_death
description: Donor's age at death in years
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:14eb923a-161d-45e2-889d-81fea7b632b6
- NIMP:PD-FTEMQD38
rank: 1000
owner: Donor
domain_of:
- Donor
range: integer
minimum_value: '0.0'
maximum_value: '200.0'
unit:
ucum_code: a
birth_country_name:
name: birth_country_name
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: birth_country_name
description: Donor's birth country
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:9c27fd29-b512-492f-a32f-b615c7585ff7
- NIMP:PD-SQSQDF25
rank: 1000
owner: Donor
domain_of:
- Donor
range: birth_country
primary_language:
name: primary_language
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: primary_language
description: Donor's primary language
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:abe9edc7-96ca-4c6a-a1ed-c008548cc373
- NIMP:PD-ATEVEV39
rank: 1000
owner: Donor
domain_of:
- Donor
range: language
secondary_language:
name: secondary_language
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: secondary_language
description: Donor's secondary language
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:37b7495f-b010-4d1c-ae32-9cb19c680950
- NIMP:PD-OBIUQB42
rank: 1000
owner: Donor
domain_of:
- Donor
range: language
marital_status:
name: marital_status
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: marital_status
description: Donor's marital or partner status
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:4f0e41c9-dd15-4a37-ae6b-11b7131d7cba
- NIMP:PD-JCYJCN35
rank: 1000
owner: Donor
domain_of:
- Donor
range: marital_status
education_years_number:
name: education_years_number
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: education_years_number
description: Number of years of education the donor had
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:add3f7fe-ae60-4cc1-bb2e-72bbbe9a1a7d
- NIMP:PD-SJSJRC41
rank: 1000
owner: Donor
domain_of:
- Donor
range: integer
minimum_value: '0.0'
maximum_value: '30.0'
unit:
ucum_code: a
handedness:
name: handedness
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: handedness
description: Donor's handedness
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:82a4087c-d0e3-48ca-8bea-a81eefc683a0
- NIMP:PD-WGWGTM45
rank: 1000
owner: Donor
domain_of:
- Donor
range: handedness
confirmed_hbcac:
name: confirmed_hbcac
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: confirmed_hbcac
description: Confirmation status of meeting inclusion criteria of the Human Brain
Cell Atlas Collection at NBB
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:b6cdddf7-6f0b-4855-a0fa-16c2ab29f219
- NIMP:PD-YBLATM45
rank: 1000
owner: Donor
domain_of:
- Donor
range: string
age_at_death_value:
name: age_at_death_value
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: age_at_death_value
description: Donor's age at death value
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:57e24d3c-c9c7-4ef3-9809-a35802d563ec
- NIMP:PD-FTFTCP24
rank: 1000
owner: Donor
domain_of:
- Donor
range: float
age_at_death_unit:
name: age_at_death_unit
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: age_at_death_unit
description: The unit of the value mentioned under "age_at_death_value"
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:b5436e99-f0a7-4c30-825d-56b88ee2ac1d
- NIMP:PD-AVAVEV39
rank: 1000
owner: Donor
domain_of:
- Donor
range: string
age_at_death_reference_point:
name: age_at_death_reference_point
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: age_at_death_reference_point
description: Reference point from which the donor's age at death was calculated
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:3bed1f94-9d82-4ed7-afdf-79d896b24dbb
- NIMP:PD-RARAGG39
rank: 1000
owner: Donor
domain_of:
- Donor
range: string
donor_species:
name: donor_species
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: donor_species
description: NCBI Taxonomy code of the donor species
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:6837cb02-6bd7-4fb8-838c-9062ead96ba4
- NIMP:PD-HEHERP41
rank: 1000
owner: Donor
domain_of:
- Donor
range: string
consent_status:
name: consent_status
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: consent_status
description: Whether the type of consent is open or controlled
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:1a53e733-276f-421a-850d-eb46e50db972
- NIMP:PD-CBCBWQ40
rank: 1000
owner: Donor
domain_of:
- Donor
range: string
positive_test_result:
name: positive_test_result
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: positive_test_result
description: Whether the donor has had a positive serology test result
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:0ef73629-5172-4517-a1f8-295be1603b80
- NIMP:PD-PDZDNL63
rank: 1000
owner: Donor
domain_of:
- Donor
range: string
donor_project:
name: donor_project
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: donor_project
description: Donor Project
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:cd772fb0-a2fe-4df3-b2dd-b62370be37fc
- NIMP:PD-HEHEQB42
rank: 1000
owner: Donor
domain_of:
- Donor
range: string
donor_labs:
name: donor_labs
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: donor_labs
description: Donor Labs
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:b97c384f-a556-42a2-a3c2-c31e5771f481
- NIMP:PD-APAPRP41
rank: 1000
owner: Donor
domain_of:
- Donor
range: string
death_causes_data_available:
name: death_causes_data_available
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: death_causes_data_available
description: NIMP indicator for availability of the cause of death
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:e46e9d58-d982-4800-b7de-67f608951211
- NIMP:PD-FYUCNY46
rank: 1000
owner: Donor
domain_of:
- Donor
range: string
rins_data_available:
name: rins_data_available
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: rins_data_available
description: NIMP indicator for availability of RNA Integrity Number
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:d05825e6-b785-42a3-9bdf-c34b30e698b8
- NIMP:PD-JRJCAR61
rank: 1000
owner: Donor
domain_of:
- Donor
range: string
rines_data_available:
name: rines_data_available
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: rines_data_available
description: NIMP indicator for availability of RNA Integrity Number equivalent
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:28a5e912-570b-4a7f-87f2-36bd5db92090
- NIMP:PD-CJRWAR61
rank: 1000
owner: Donor
domain_of:
- Donor
range: string
hemisphere:
name: hemisphere
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: hemisphere
description: Hemisphere of the brain
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:68b7a28b-d695-4ec9-800b-6a27ca206081
- NIMP:PD-JRJRFQ31
rank: 1000
owner: Donor
domain_of:
- Donor
range: hemisphere
post_mortem_interval:
name: post_mortem_interval
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: post_mortem_interval
description: Post Mortem Interval in hours
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:6fd5c5ac-b128-4a4a-ae98-09eaeba22f92
- NIMP:PD-CHCHLC46
rank: 1000
owner: Donor
domain_of:
- Donor
range: float
minimum_value: '0.0'
maximum_value: '8888.0'
unit:
ucum_code: h
left_hemisphere_preparation:
name: left_hemisphere_preparation
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: left_hemisphere_preparation
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from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:57d5378f-a451-4bf5-a472-cc88d0d29586
- NIMP:PD-JSJSUS44
rank: 1000
owner: Donor
domain_of:
- Donor
range: preparation
left_hemisphere_prep_2:
name: left_hemisphere_prep_2
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: left_hemisphere_prep_2
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from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:d76753fb-b30b-419b-b853-d341510d8034
- NIMP:PD-ZMPWIB34
rank: 1000
owner: Donor
domain_of:
- Donor
range: string
right_hemisphere_preparation:
name: right_hemisphere_preparation
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: right_hemisphere_preparation
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from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:477c2600-f979-43c5-9c61-ab61fd771584
- NIMP:PD-MLMLPG50
rank: 1000
owner: Donor
domain_of:
- Donor
range: preparation
right_hemisphere_prep_2:
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local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: right_hemisphere_prep_2
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from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
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- NIMP:PD-FWUVWQ40
rank: 1000
owner: Donor
domain_of:
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range: string
rin:
name: rin
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: rin
description: RNA Integrity Number
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:cd472c0d-0b64-45c9-a38e-e54d15cea953
- NIMP:PD-LPLPSK50
rank: 1000
owner: Donor
domain_of:
- Donor
range: float
minimum_value: '0.0'
maximum_value: '99.0'
rine:
name: rine
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: rine
description: RNA Integrity Number equivalent
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:1210148d-d8fb-45aa-b51a-4b19b6d09bec
- NIMP:PD-XCXCRC41
rank: 1000
owner: Donor
domain_of:
- Donor
range: float
minimum_value: '0.0'
maximum_value: '99.0'
ph:
name: ph
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: ph
description: pH value
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:9e67af02-c081-43e1-a42c-bf9603cae616
- NIMP:PD-FXFXDK42
rank: 1000
owner: Donor
domain_of:
- Donor
range: float
minimum_value: '0.0'
maximum_value: '99.0'
brain_weight:
name: brain_weight
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: brain_weight
description: The weight of the brain in grams
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:546fc32d-f8a2-4c00-924a-8c4730f11f51
- NIMP:PD-WUASWQ40
rank: 1000
owner: Donor
domain_of:
- Donor
range: integer
minimum_value: '0.0'
maximum_value: '9998.0'
unit:
ucum_code: g
weighed_type:
name: weighed_type
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: weighed_type
description: The type of the brain tissue weighed based on the preparation
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:a7463e3f-0c61-4718-a7d0-60fd2116908a
- NIMP:PD-FGHMDF25
rank: 1000
owner: Donor
domain_of:
- Donor
range: brain_tissue_weight_type
photo_2d_available:
name: photo_2d_available
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: photo_2d_available
description: Is a 2D photograph is available?
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:611beda8-1ac6-4183-a284-04a30bb474f3
- NIMP:PD-NINIEV39
rank: 1000
owner: Donor
domain_of:
- Donor
range: string
scan_3d_available:
name: scan_3d_available
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: scan_3d_available
description: Is a 3D scan is available?
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:658e8a80-e232-438f-8c1e-d5f38724dc55
- NIMP:PD-RBRBQB42
rank: 1000
owner: Donor
domain_of:
- Donor
range: string
antemortem_mri_available:
name: antemortem_mri_available
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: antemortem_mri_available
description: Is an Antemortem MRI is available?
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:43a04caa-4f28-47ac-8a9d-74c40f10776f
- NIMP:PD-RCRCRC24
rank: 1000
owner: Donor
domain_of:
- Donor
range: string
postmortem_mri_available:
name: postmortem_mri_available
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: postmortem_mri_available
description: Is a Postmortem MRI Available
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:0badd072-0c25-48c6-9357-44d5b5bc0818
- NIMP:PD-YNYNEV39
rank: 1000
owner: Donor
domain_of:
- Donor
range: string
postmortem_mri_type:
name: postmortem_mri_type
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: postmortem_mri_type
description: The type of postmortem MRI if it is available.
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:64a607a9-21e6-4c73-8f2e-2d67b0dc51c8
- NIMP:PD-BEBEEV39
rank: 1000
owner: Donor
domain_of:
- Donor
range: postmortem_MRI
non_brain_specimen_data_available:
name: non_brain_specimen_data_available
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: non_brain_specimen_data_available
description: NIMP indicator for availability of non-brain Specimen data
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:e537aacd-040a-423b-9920-9ce5adecf111
- NIMP:PD-JSFGYJ57
rank: 1000
owner: Donor
domain_of:
- Donor
range: string
neurologic_events_data_available:
name: neurologic_events_data_available
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: neurologic_events_data_available
description: NIMP indicator for availability of perinatal neurologic events data
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:27a7df05-5aec-4060-85b9-2b4658ecd1e8
- NIMP:PD-SLCHJH85
rank: 1000
owner: Donor
domain_of:
- Donor
range: string
infectious_testings_data_available:
name: infectious_testings_data_available
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: infectious_testings_data_available
description: NIMP indicator for availability of infectious Disease/Serology testing
data
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:af034af4-9a8d-49ed-a100-1e87ebe962f5
- NIMP:PD-AATACA52
rank: 1000
owner: Donor
domain_of:
- Donor
range: string
tox_screening_data_available:
name: tox_screening_data_available
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: tox_screening_data_available
description: NIMP indicator for availability of toxicology screening data
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:3730c096-5524-43f4-a3c0-010ccdf80ae1
- NIMP:PD-LELMNL63
rank: 1000
owner: Donor
domain_of:
- Donor
range: string
nn_diagnoses_data_available:
name: nn_diagnoses_data_available
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: nn_diagnoses_data_available
description: NIMP indicator for availability of non-neuropathological diagnoses
data
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:87a4e421-4586-4938-91cc-6ae4e6e95dde
- NIMP:PD-JXZWYJ57
rank: 1000
owner: Donor
domain_of:
- Donor
range: string
non_brain_tissue_available:
name: non_brain_tissue_available
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: non_brain_tissue_available
description: Are any non-brain tissues available?
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:3a064c96-a956-4cf3-8b77-056b8e392f99
- NIMP:PD-LGLGRZ37
rank: 1000
owner: Donor
domain_of:
- Donor
range: string
tissue_type:
name: tissue_type
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: tissue_type
description: The type of non-brain tissues
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:33ccbc85-ae35-44d6-8bc6-c2fb91116cf7
- NIMP:PD-JLJLCT43
rank: 1000
owner: Donor
domain_of:
- Donor
range: tissue
clinical_brain_diagnosis:
name: clinical_brain_diagnosis
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: clinical_brain_diagnosis_code
description: The ICD-10 code of the clinical brain diagnosis
in_subset:
- Restricted
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:b7a34c73-ae08-43d3-80d2-d5ef8436e449
- NIMP:PD-CLCLXT26
rank: 1000
owner: Donor
domain_of:
- Donor
range: string
clinical_brain_diagnosis_confidence_level:
name: clinical_brain_diagnosis_confidence_level
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: clinical_brain_diagnosis_confidence_level
description: The confidence level of the clinical brain diagnosis
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:2e72b4b9-d5fb-4f0d-897c-1f977ed4fabd
- NIMP:PD-LCLCJH33
rank: 1000
owner: Donor
domain_of:
- Donor
range: confidence_level
genetic_diagnosis_code:
name: genetic_diagnosis_code
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: genetic_diagnosis_code
description: The ICD-10 code of the genetic diagnosis
in_subset:
- Restricted
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:7a7916e0-ff79-4426-b49f-58e2f2a8a367
- NIMP:PD-KRKRBX30
rank: 1000
owner: Donor
domain_of:
- Donor
range: string
genetic_diagnosis_confidence_level:
name: genetic_diagnosis_confidence_level
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: genetic_diagnosis_confidence_level
description: The confidence level of the genetic diagnosis
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:cb2b0108-8c07-40e8-92a3-b693b6dc64b4
- NIMP:PD-NONORZ37
rank: 1000
owner: Donor
domain_of:
- Donor
range: confidence_level
non_brain_diagnosis_code:
name: non_brain_diagnosis_code
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: non_brain_diagnosis_code
description: The ICD-10 code of the non-brain diagnosis
in_subset:
- Restricted
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:65e8824e-01d2-44cf-9f47-9962461a65c9
- NIMP:PD-DNDNPI37
rank: 1000
owner: Donor
domain_of:
- Donor
range: string
non_brain_diagnosis_confidence_level:
name: non_brain_diagnosis_confidence_level
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: non_brain_diagnosis_confidence_level
description: The confidence level of the non-brain diagnosis
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:2a7ff937-287b-40a3-a1f6-ebf598683774
- NIMP:PD-FGFGUS44
rank: 1000
owner: Donor
domain_of:
- Donor
range: confidence_level
birth_weight_lbs:
name: birth_weight_lbs
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: birth_weight_lbs
description: Birth weight in pounds
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:69d9a60d-32d5-4c3a-a26a-802d8f030c8d
- NIMP:PD-YOVEEV39
rank: 1000
owner: Donor
domain_of:
- Donor
range: float
minimum_value: '0.0'
maximum_value: '100.0'
unit:
ucum_code: '[lb_av]'
birth_weight_oz:
name: birth_weight_oz
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: birth_weight_oz
description: Birth weight in ounces
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:b6f30050-f762-4427-8533-31738e737ea2
- NIMP:PD-CANPLC46
rank: 1000
owner: Donor
domain_of:
- Donor
range: float
minimum_value: '0.0'
maximum_value: '100.0'
unit:
ucum_code: '[oz_av]'
apgar_5_minute_score:
name: apgar_5_minute_score
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: apgar_5_minute_score
description: The APGAR Five Minute Score. This is a test given to newborns just
after birth
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:3a10dabf-39b0-4eb7-8399-85fd325c5646
- NIMP:PD-GLPDCP24
rank: 1000
owner: Donor
domain_of:
- Donor
range: integer
minimum_value: '1.0'
maximum_value: '10.0'
apgar_10_minute_score:
name: apgar_10_minute_score
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: apgar_10_minute_score
description: The APGAR Ten Minute Score. This is a test given to newborns just
after birth
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:09d512b6-7c20-4693-8894-77824ad7f04d
- NIMP:PD-YKRCCP24
rank: 1000
owner: Donor
domain_of:
- Donor
range: integer
minimum_value: '1.0'
maximum_value: '10.0'
neuropathology_diagnosis_code:
name: neuropathology_diagnosis_code
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: neuropathology_diagnosis_code
description: The ICD-10 codes for the neuropathological diagnoses
in_subset:
- Restricted
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:784e9cc1-7258-4535-a6d5-f7f9a4c2da4b
- NIMP:PD-NCMNSS51
rank: 1000
owner: Donor
domain_of:
- Donor
range: string
artifacts_type:
name: artifacts_type
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: artifacts_type
description: The type of artifacts
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:dc217b9b-ed6b-48e2-93b4-4f648dc395f7
- NIMP:PD-NCNCRC24
rank: 1000
owner: Donor
domain_of:
- Donor
range: artifact_type
developmental_type_specify:
name: developmental_type_specify
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: developmental_type_specify
description: The developmental neuropathology diagnoses specified
in_subset:
- Restricted
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:bee7d477-2dec-4bf5-878e-a105a0054366
- NIMP:PD-TYTYOO47
rank: 1000
owner: Donor
domain_of:
- Donor
range: string
inflammatory_type_specify:
name: inflammatory_type_specify
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: inflammatory_type_specify
description: The inflammatory neuropathology diagnoses specified
in_subset:
- Restricted
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:616ba8d8-ced3-4f3e-b1ca-7103eb7a2c94
- NIMP:PD-MAMATE52
rank: 1000
owner: Donor
domain_of:
- Donor
range: string
infectious_type_specify:
name: infectious_type_specify
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: infectious_type_specify
description: The infectious neuropathology diagnoses specified
in_subset:
- Restricted
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:c73cea5e-44d1-4dd9-b55e-3c6ef5dd2ef2
- NIMP:PD-TYTYTE52
rank: 1000
owner: Donor
domain_of:
- Donor
range: string
traumatic_type:
name: traumatic_type
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: traumatic_type
description: The type of traumatic neuropathology diagnosis
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:01d2f488-f30b-40e0-913f-c9adc6b39b97
- NIMP:PD-DRDRCT43
rank: 1000
owner: Donor
domain_of:
- Donor
range: traumatic_type
vascular_type:
name: vascular_type
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: vascular_type
description: The type of vascular neuropathology diagnosis
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:5beafa90-ffdb-4cce-a78c-a3b3175210b6
- NIMP:PD-RIRITM45
rank: 1000
owner: Donor
domain_of:
- Donor
range: vascular_type
neoplastic_type:
name: neoplastic_type
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: neoplastic_type
description: The type of neoplastic neuropathology diagnosis
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:a58be8f4-2756-4a66-9d05-1fbf44b4e810
- NIMP:PD-NENERZ37
rank: 1000
owner: Donor
domain_of:
- Donor
range: neoplastic_type
aging_type:
name: aging_type
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: aging_type
description: The type of aging-related neuropathology diagnosis
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:5e31b66f-131e-4d5e-8760-ddd85f5634d5
- NIMP:PD-WNWNRC24
rank: 1000
owner: Donor
domain_of:
- Donor
range: aging_type
neurodegenerative_type:
name: neurodegenerative_type
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: neurodegenerative_type
description: The type of neurodegenerative neuropathology diagnosis
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- bican:b150b62c-a968-4f5d-9aa3-d1ab5207ff83
- NIMP:PD-PEPERZ37
rank: 1000
owner: Donor
domain_of:
- Donor
range: neurodegenerative_type
name:
name: name
definition_uri: https://w3id.org/biolink/vocab/name
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: donor_local_name
description: Donor identifier given by the brain bank or the institution that
holds the brain
in_subset:
- translator_minimal
- samples
from_schema: https://w3id.org/brain-bican/donor
aliases:
- label
- display name
- title
mappings:
- rdfs:label
exact_mappings:
- bican:f8af20f7-e8b8-47b5-8a68-9ec1f913ffdf
- NIMP:PD-QLQLFB34
narrow_mappings:
- dct:title
- WIKIDATA_PROPERTY:P1476
rank: 1000
domain: entity
slot_uri: rdfs:label
owner: Donor
domain_of:
- attribute
- entity
- macromolecular machine mixin
- Donor
- named thing
- organism taxon
- study result
- relative frequency analysis result
- information content entity
- dataset
- physical entity
- activity
- procedure
- material sample
- biological entity
- gene
- genome
range: label type
xref:
name: xref
definition_uri: https://w3id.org/biolink/vocab/xref
local_names:
NIMP_resource_type:
local_name_source: NIMP_resource_type
local_name_value: Donor
NIMP_variable_name:
local_name_source: NIMP_variable_name
local_name_value: donor_nhash_id
description: NIMP generated globally unique identifier for a Donor
in_subset:
- translator_minimal
from_schema: https://w3id.org/brain-bican/donor
aliases:
- dbxref
- Dbxref
- DbXref
- record_url
- source_record_urls
exact_mappings:
- bican:98b28574-f97f-4436-b723-10a6508431b5
- NIMP:PD-DEXRDO36
narrow_mappings:
- gff3:Dbxref
- gpi:DB_Xrefs
rank: 1000
domain: named thing
slot_uri: biolink:xref
owner: Donor
domain_of:
- named thing
- gene
- Donor
- attribute
- organism taxon
- study result
- relative frequency analysis result
- information content entity
- dataset
- physical entity
- activity
- procedure
- material sample
- biological entity
- genome
range: uriorcurie
multivalued: true
in taxon:
name: in taxon
definition_uri: https://w3id.org/biolink/vocab/in_taxon
annotations:
canonical_predicate:
tag: canonical_predicate
value: true
description: connects an entity to its taxonomic classification. Only certain
kinds of entities can be taxonomically classified; see 'thing with taxon'
in_subset:
- translator_minimal
from_schema: https://w3id.org/brain-bican/donor
aliases:
- instance of
- is organism source of gene product
- organism has gene
- gene found in organism
- gene product has organism source
exact_mappings:
- RO:0002162
- WIKIDATA_PROPERTY:P703
narrow_mappings:
- RO:0002160
rank: 1000
is_a: related to at instance level
domain: thing with taxon
slot_uri: biolink:in_taxon
inherited: true
alias: in_taxon
owner: Donor
domain_of:
- thing with taxon
- biological entity
- gene
- genome
range: organism taxon
multivalued: true
in taxon label:
name: in taxon label
definition_uri: https://w3id.org/biolink/vocab/in_taxon_label
annotations:
denormalized:
tag: denormalized
value: true
description: The human readable scientific name for the taxon of the entity.
in_subset:
- translator_minimal
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- WIKIDATA_PROPERTY:P225
rank: 1000
is_a: node property
domain: thing with taxon
slot_uri: biolink:in_taxon_label
alias: in_taxon_label
owner: Donor
domain_of:
- thing with taxon
- biological entity
- gene
- genome
range: label type
was_derived_from:
name: was_derived_from
description: A derivation is a transformation of an entity into another, an update
of an entity resulting in a new one, or the construction of a new entity based
on a pre-existing entity.
from_schema: https://w3id.org/brain-bican/donor
rank: 1000
slot_uri: prov:wasDerivedFrom
owner: Donor
domain_of:
- ProvEntity
range: ProvEntity
was_generated_by:
name: was_generated_by
description: Generation is the completion of production of a new entity by an
activity. This entity did not exist before generation and becomes available
for usage after this generation.
from_schema: https://w3id.org/brain-bican/donor
rank: 1000
slot_uri: prov:wasGeneratedBy
owner: Donor
domain_of:
- ProvEntity
range: ProvActivity
id:
name: id
definition_uri: https://w3id.org/biolink/vocab/id
description: A unique identifier for an entity. Must be either a CURIE shorthand
for a URI or a complete URI
in_subset:
- translator_minimal
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- AGRKB:primaryId
- gff3:ID
- gpi:DB_Object_ID
rank: 1000
domain: entity
slot_uri: biolink:id
identifier: true
owner: Donor
domain_of:
- ontology class
- entity
- attribute
- named thing
- taxonomic rank
- organism taxon
- study result
- relative frequency analysis result
- information content entity
- dataset
- physical entity
- activity
- procedure
- material sample
- biological entity
- gene
- genome
range: string
required: true
iri:
name: iri
definition_uri: https://w3id.org/biolink/vocab/iri
description: An IRI for an entity. This is determined by the id using expansion
rules.
in_subset:
- translator_minimal
- samples
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- WIKIDATA_PROPERTY:P854
rank: 1000
slot_uri: biolink:iri
owner: Donor
domain_of:
- attribute
- entity
- named thing
- organism taxon
- study result
- relative frequency analysis result
- information content entity
- dataset
- physical entity
- activity
- procedure
- material sample
- biological entity
- gene
- genome
range: iri type
type:
name: type
definition_uri: https://w3id.org/biolink/vocab/type
from_schema: https://w3id.org/brain-bican/donor
mappings:
- rdf:type
exact_mappings:
- gff3:type
- gpi:DB_Object_Type
rank: 1000
domain: entity
slot_uri: rdf:type
owner: Donor
domain_of:
- entity
- attribute
- named thing
- organism taxon
- study result
- relative frequency analysis result
- information content entity
- dataset
- physical entity
- activity
- procedure
- material sample
- biological entity
- gene
- genome
range: string
multivalued: true
description:
name: description
definition_uri: https://w3id.org/biolink/vocab/description
description: a human-readable description of an entity
in_subset:
- translator_minimal
from_schema: https://w3id.org/brain-bican/donor
aliases:
- definition
mappings:
- dct:description
exact_mappings:
- IAO:0000115
- skos:definitions
narrow_mappings:
- gff3:Description
rank: 1000
slot_uri: dct:description
owner: Donor
domain_of:
- entity
- attribute
- named thing
- organism taxon
- study result
- relative frequency analysis result
- information content entity
- dataset
- physical entity
- activity
- procedure
- material sample
- biological entity
- gene
- genome
range: narrative text
has attribute:
name: has attribute
definition_uri: https://w3id.org/biolink/vocab/has_attribute
description: connects any entity to an attribute
in_subset:
- samples
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- SIO:000008
close_mappings:
- OBI:0001927
narrow_mappings:
- OBAN:association_has_subject_property
- OBAN:association_has_object_property
- CPT:has_possibly_included_panel_element
- DRUGBANK:category
- EFO:is_executed_in
- HANCESTRO:0301
- LOINC:has_action_guidance
- LOINC:has_adjustment
- LOINC:has_aggregation_view
- LOINC:has_approach_guidance
- LOINC:has_divisor
- LOINC:has_exam
- LOINC:has_method
- LOINC:has_modality_subtype
- LOINC:has_object_guidance
- LOINC:has_scale
- LOINC:has_suffix
- LOINC:has_time_aspect
- LOINC:has_time_modifier
- LOINC:has_timing_of
- NCIT:R88
- NCIT:eo_disease_has_property_or_attribute
- NCIT:has_data_element
- NCIT:has_pharmaceutical_administration_method
- NCIT:has_pharmaceutical_basic_dose_form
- NCIT:has_pharmaceutical_intended_site
- NCIT:has_pharmaceutical_release_characteristics
- NCIT:has_pharmaceutical_state_of_matter
- NCIT:has_pharmaceutical_transformation
- NCIT:is_qualified_by
- NCIT:qualifier_applies_to
- NCIT:role_has_domain
- NCIT:role_has_range
- INO:0000154
- HANCESTRO:0308
- orphanet:C016
- orphanet:C017
- RO:0000053
- RO:0000086
- RO:0000087
- SNOMED:has_access
- SNOMED:has_clinical_course
- SNOMED:has_count_of_base_of_active_ingredient
- SNOMED:has_dose_form_administration_method
- SNOMED:has_dose_form_release_characteristic
- SNOMED:has_dose_form_transformation
- SNOMED:has_finding_context
- SNOMED:has_finding_informer
- SNOMED:has_inherent_attribute
- SNOMED:has_intent
- SNOMED:has_interpretation
- SNOMED:has_laterality
- SNOMED:has_measurement_method
- SNOMED:has_method
- SNOMED:has_priority
- SNOMED:has_procedure_context
- SNOMED:has_process_duration
- SNOMED:has_property
- SNOMED:has_revision_status
- SNOMED:has_scale_type
- SNOMED:has_severity
- SNOMED:has_specimen
- SNOMED:has_state_of_matter
- SNOMED:has_subject_relationship_context
- SNOMED:has_surgical_approach
- SNOMED:has_technique
- SNOMED:has_temporal_context
- SNOMED:has_time_aspect
- SNOMED:has_units
- UMLS:has_structural_class
- UMLS:has_supported_concept_property
- UMLS:has_supported_concept_relationship
- UMLS:may_be_qualified_by
rank: 1000
domain: entity
slot_uri: biolink:has_attribute
alias: has_attribute
owner: Donor
domain_of:
- entity
- attribute
- named thing
- organism taxon
- study result
- relative frequency analysis result
- information content entity
- dataset
- physical entity
- activity
- procedure
- material sample
- biological entity
- gene
- genome
range: attribute
multivalued: true
deprecated:
name: deprecated
definition_uri: https://w3id.org/biolink/vocab/deprecated
description: A boolean flag indicating that an entity is no longer considered
current or valid.
from_schema: https://w3id.org/brain-bican/donor
exact_mappings:
- oboInOwl:ObsoleteClass
rank: 1000
slot_uri: biolink:deprecated
owner: Donor
domain_of:
- entity
- attribute
- named thing
- organism taxon
- study result
- relative frequency analysis result
- information content entity
- dataset
- physical entity
- activity
- procedure
- material sample
- biological entity
- gene
- genome
range: boolean
provided by:
name: provided by
definition_uri: https://w3id.org/biolink/vocab/provided_by
description: The value in this node property represents the knowledge provider
that created or assembled the node and all of its attributes. Used internally
to represent how a particular node made its way into a knowledge provider or
graph.
from_schema: https://w3id.org/brain-bican/donor
rank: 1000
is_a: node property
domain: named thing
slot_uri: biolink:provided_by
alias: provided_by
owner: Donor
domain_of:
- named thing
- attribute
- organism taxon
- study result
- relative frequency analysis result
- information content entity
- dataset
- physical entity
- activity
- procedure
- material sample
- biological entity
- gene
- genome
range: string
multivalued: true
full name:
name: full name
definition_uri: https://w3id.org/biolink/vocab/full_name
description: a long-form human readable name for a thing
from_schema: https://w3id.org/brain-bican/donor
rank: 1000
is_a: node property
domain: named thing
slot_uri: biolink:full_name
alias: full_name
owner: Donor
domain_of:
- named thing
- attribute
- organism taxon
- study result
- relative frequency analysis result
- information content entity
- dataset
- physical entity
- activity
- procedure
- material sample
- biological entity
- gene
- genome
range: label type
synonym:
name: synonym
definition_uri: https://w3id.org/biolink/vocab/synonym
description: Alternate human-readable names for a thing
in_subset:
- translator_minimal
from_schema: https://w3id.org/brain-bican/donor
aliases:
- alias
narrow_mappings:
- skos:altLabel
- gff3:Alias
- AGRKB:synonyms
- gpi:DB_Object_Synonyms
- HANCESTRO:0330
- IAO:0000136
- RXNORM:has_tradename
rank: 1000
is_a: node property
domain: named thing
slot_uri: biolink:synonym
owner: Donor
domain_of:
- named thing
- attribute
- organism taxon
- study result
- relative frequency analysis result
- information content entity
- dataset
- physical entity
- activity
- procedure
- material sample
- biological entity
- gene
- genome
range: label type
multivalued: true
information content:
name: information content
definition_uri: https://w3id.org/biolink/vocab/information_content
description: Information content (IC) value for a term, primarily from Automats.
from_schema: https://w3id.org/brain-bican/donor
rank: 1000
is_a: node property
domain: named thing
slot_uri: biolink:information_content
alias: information_content
owner: Donor
domain_of:
- named thing
- attribute
- organism taxon
- study result
- relative frequency analysis result
- information content entity
- dataset
- physical entity
- activity
- procedure
- material sample
- biological entity
- gene
- genome
range: float
equivalent identifiers:
name: equivalent identifiers
definition_uri: https://w3id.org/biolink/vocab/equivalent_identifiers
description: A set of identifiers that are considered equivalent to the primary
identifier of the entity. This attribute is used to represent a collection of
identifiers that are considered equivalent to the primary identifier of an entity.
These equivalent identifiers may come from different databases, ontologies,
or naming conventions, but they all refer to the same underlying concept or
entity. This attribute is particularly useful in data integration and interoperability
scenarios, where it is important to recognize and link different representations
of the same entity across various sources.
from_schema: https://w3id.org/brain-bican/donor
see_also:
- biolink:xref
- biolink:synonyms
rank: 1000
is_a: node property
domain: named thing
slot_uri: biolink:equivalent_identifiers
alias: equivalent_identifiers
owner: Donor
domain_of:
- named thing
- attribute
- organism taxon
- study result
- relative frequency analysis result
- information content entity
- dataset
- physical entity
- activity
- procedure
- material sample
- biological entity
- gene
- genome
range: uriorcurie
multivalued: true
named thing_category:
name: named thing_category
definition_uri: https://w3id.org/biolink/vocab/category
description: Name of the high level ontology class in which this entity is categorized.
Corresponds to the label for the biolink entity type class. In a neo4j database
this MAY correspond to the neo4j label tag. In an RDF database it should be
a biolink model class URI. This field is multi-valued. It should include values
for ancestors of the biolink class; for example, a protein such as Shh would
have category values `biolink:Protein`, `biolink:GeneProduct`, `biolink:MolecularEntity`.
In an RDF database, nodes will typically have an rdf:type triples. This can
be to the most specific biolink class, or potentially to a class more specific
than something in biolink. For example, a sequence feature `f` may have a rdf:type
assertion to a SO class such as TF_binding_site, which is more specific than
anything in biolink. Here we would have categories {biolink:GenomicEntity, biolink:MolecularEntity,
biolink:NamedThing}
in_subset:
- translator_minimal
from_schema: https://w3id.org/brain-bican/donor
rank: 1000
is_a: category
domain: named thing
slot_uri: biolink:category
designates_type: true
alias: category
owner: Donor
domain_of:
- named thing
- attribute
- organism taxon
- study result
- relative frequency analysis result
- information content entity
- dataset
- physical entity
- activity
- procedure
- material sample
- biological entity
- gene
- genome
is_class_field: true
is_usage_slot: true
usage_slot_name: category
range: uriorcurie
required: true
multivalued: true
category:
name: category
definition_uri: https://w3id.org/biolink/vocab/category
description: Name of the high level ontology class in which this entity is categorized.
Corresponds to the label for the biolink entity type class. In a neo4j database
this MAY correspond to the neo4j label tag. In an RDF database it should be
a biolink model class URI. This field is multi-valued. It should include values
for ancestors of the biolink class; for example, a protein such as Shh would
have category values `biolink:Protein`, `biolink:GeneProduct`, `biolink:MolecularEntity`.
In an RDF database, nodes will typically have an rdf:type triples. This can
be to the most specific biolink class, or potentially to a class more specific
than something in biolink. For example, a sequence feature `f` may have a rdf:type
assertion to a SO class such as TF_binding_site, which is more specific than
anything in biolink. Here we would have categories {biolink:GenomicEntity, biolink:MolecularEntity,
biolink:NamedThing}
in_subset:
- translator_minimal
from_schema: https://w3id.org/brain-bican/donor
rank: 1000
is_a: type
domain: entity
slot_uri: biolink:category
designates_type: true
owner: Donor
domain_of:
- entity
is_class_field: true
range: uriorcurie
required: true
multivalued: true