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Build Process Flow

Project build process works as follows:

  1. Related structure graph is downloaded from Allen, eg. (http://api.brain-map.org/api/v2/structure_graph_download/8.json)[http://api.brain-map.org/api/v2/structure_graph_download/8.json]
  2. Using the LinkML-OWL structure graph is converted to the owl. structure_graph_schema.yaml template is utilized for the conversion.
  3. Related bridge files are downloaded from the UBERON repo. In this case uberon-bridge-to-pba.obo and uberon-bridge-to-aba.obo
  4. Using the ROBOT ontology templating tool, external links to the related atlas web pages are generated (linkouts.owl). Such as http://atlas.brain-map.org/atlas?atlas=138322605#structure=10499
  5. Finally all ontologies (linkouts.owl, structure graph ontology and bridges) are merged and the uberon import module added to the output ontology.