Skip to content

Build Process Flow

Project build process works as follows:

  1. Related structure graph is downloaded from Allen, eg. http://api.brain-map.org/api/v2/structure_graph_download/1.json
  2. Using the LinkML-OWL structure graph is converted to the owl. structure_graph_schema.yaml template is utilized for the conversion.
  3. Using the ROBOT ontology templating tool, a new bridge file template is generated.
  4. Using the new bridge template atlas and UBERON terms are manually mapped.
  5. A 'sources' ROBOT template is generated to annotate if the mapping derived from the old bride or the new one.
  6. Using the ROBOT ontology templating tool, external links to the related atlas web pages are generated (linkouts.owl). Such as, http://atlas.brain-map.org/atlas?atlas=138322605#structure=10499
  7. Finally all ontologies (linkouts.owl, structure graph ontology and the new bridges) are merged and the uberon import module added to the output ontology.