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Slot: percent_cdna_longer_than_400bp

QC metric to measure mRNA degradation of cDNA. Higher % is higher quality starting material. Over 400bp is used as a universal cutoff for intact (full length) vs degraded cDNA and is a common output from Bioanalyzer and Fragment Analyzer elecropheragrams.

URI: bican:8d150467-f69e-461c-b54c-bcfd22f581e5

Applicable Classes

Name Description Modifies Slot
AmplifiedCdna A collection of cDNA molecules derived and amplified from an input barcoded c... no

Properties

Identifier and Mapping Information

Schema Source

  • from schema: https://identifiers.org/brain-bican/library-generation-schema

Mappings

Mapping Type Mapped Value
self bican:8d150467-f69e-461c-b54c-bcfd22f581e5
native bican:percent_cdna_longer_than_400bp
exact NIMP:PD-JJJJWD35

LinkML Source

name: percent_cdna_longer_than_400bp
local_names:
  NIMP:
    local_name_source: NIMP
    local_name_value: amplified_cdna_percent_cdna_longer_than_400bp
description: QC metric to measure mRNA degradation of cDNA.  Higher % is higher quality
  starting material.  Over 400bp is used as a universal cutoff for intact (full length)
  vs degraded cDNA and is a common output from Bioanalyzer and Fragment Analyzer elecropheragrams.
in_subset:
- analysis
from_schema: https://identifiers.org/brain-bican/library-generation-schema
exact_mappings:
- NIMP:PD-JJJJWD35
rank: 1000
slot_uri: bican:8d150467-f69e-461c-b54c-bcfd22f581e5
alias: amplified cDNA percent cDNA longer than 400bp
owner: AmplifiedCdna
domain_of:
- AmplifiedCdna
range: float