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Slot: number_of_expected_cells

Expected number of cells/nuclei of a barcoded_cell_sample that will be barcoded and available for sequencing. This is a derived number from 'Barcoded cell input quantity count' that is dependent on the "capture rate" of the barcoding method. It is usually a calculated fraction of the 'Barcoded cell input quantity count' going into the barcoding method.

URI: bican:f10e928d-5a2b-4943-af18-d8fe5d05528d

Applicable Classes

Name Description Modifies Slot
BarcodedCellSample A collection of molecularly barcoded cells no

Properties

Identifier and Mapping Information

Schema Source

  • from schema: https://identifiers.org/brain-bican/library-generation-schema

LinkML Source

name: number_of_expected_cells
local_names:
  NIMP:
    local_name_source: NIMP
    local_name_value: barcoded_cell_sample_number_of_expected_cells
description: Expected number of cells/nuclei of a barcoded_cell_sample that will be
  barcoded and available for sequencing.  This is a derived number from 'Barcoded
  cell input quantity count' that is dependent on the "capture rate" of the barcoding
  method.  It is usually a calculated fraction of the 'Barcoded cell input quantity
  count' going into the barcoding method.
in_subset:
- analysis
from_schema: https://identifiers.org/brain-bican/library-generation-schema
exact_mappings:
- NIMP:PD-ONONEV39
rank: 1000
slot_uri: bican:f10e928d-5a2b-4943-af18-d8fe5d05528d
alias: expected cell capture
owner: BarcodedCellSample
domain_of:
- BarcodedCellSample
range: integer