Slot: number_of_expected_cells
Expected number of cells/nuclei of a barcoded_cell_sample that will be barcoded and available for sequencing. This is a derived number from 'Barcoded cell input quantity count' that is dependent on the "capture rate" of the barcoding method. It is usually a calculated fraction of the 'Barcoded cell input quantity count' going into the barcoding method.
URI: bican:f10e928d-5a2b-4943-af18-d8fe5d05528d
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| BarcodedCellSample | A collection of molecularly barcoded cells | no |
Properties
- Range: Integer
Identifier and Mapping Information
Schema Source
- from schema: https://identifiers.org/brain-bican/library-generation-schema
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | bican:f10e928d-5a2b-4943-af18-d8fe5d05528d |
| native | bican:number_of_expected_cells |
| exact | NIMP:PD-ONONEV39 |
LinkML Source
name: number_of_expected_cells
local_names:
NIMP:
local_name_source: NIMP
local_name_value: barcoded_cell_sample_number_of_expected_cells
description: Expected number of cells/nuclei of a barcoded_cell_sample that will be
barcoded and available for sequencing. This is a derived number from 'Barcoded
cell input quantity count' that is dependent on the "capture rate" of the barcoding
method. It is usually a calculated fraction of the 'Barcoded cell input quantity
count' going into the barcoding method.
in_subset:
- analysis
from_schema: https://identifiers.org/brain-bican/library-generation-schema
exact_mappings:
- NIMP:PD-ONONEV39
rank: 1000
slot_uri: bican:f10e928d-5a2b-4943-af18-d8fe5d05528d
alias: expected cell capture
owner: BarcodedCellSample
domain_of:
- BarcodedCellSample
range: integer