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Slot: in_taxon

connects an entity to its taxonomic classification. Only certain kinds of entities can be taxonomically classified; see 'thing with taxon'

URI: biolink:in_taxon

Inheritance

Applicable Classes

Name Description Modifies Slot
Gene A region (or regions) that includes all of the sequence elements necessary to... no
GenomeAssembly Represents a genome assembly no
GenomeAnnotation Represents a genome annotation no
Genome A genome is the sum of genetic material within a cell or virion no
GeneAnnotation Represents a single gene no
ThingWithTaxon A mixin that can be used on any entity that can be taxonomically classified no
BiologicalEntity no

Properties

Aliases

  • instance of
  • is organism source of gene product
  • organism has gene
  • gene found in organism
  • gene product has organism source

Identifier and Mapping Information

Annotations

property value
canonical_predicate True

Schema Source

  • from schema: https://w3id.org/brain-bican/bke-taxonomy

Mappings

Mapping Type Mapped Value
self biolink:in_taxon
native bican:in_taxon
exact RO:0002162, WIKIDATA_PROPERTY:P703
narrow RO:0002160

LinkML Source

name: in taxon
definition_uri: https://w3id.org/biolink/vocab/in_taxon
annotations:
  canonical_predicate:
    tag: canonical_predicate
    value: true
description: connects an entity to its taxonomic classification. Only certain kinds
  of entities can be taxonomically classified; see 'thing with taxon'
in_subset:
- translator_minimal
from_schema: https://w3id.org/brain-bican/bke-taxonomy
aliases:
- instance of
- is organism source of gene product
- organism has gene
- gene found in organism
- gene product has organism source
exact_mappings:
- RO:0002162
- WIKIDATA_PROPERTY:P703
narrow_mappings:
- RO:0002160
rank: 1000
is_a: related to at instance level
domain: thing with taxon
slot_uri: biolink:in_taxon
inherited: true
alias: in_taxon
owner: thing with taxon
domain_of:
- thing with taxon
- biological entity
- gene
- genome
range: organism taxon
multivalued: true