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Slot: in_taxon

connects an entity to its taxonomic classification. Only certain kinds of entities can be taxonomically classified; see 'thing with taxon'

URI: biolink:in_taxon

Inheritance

Applicable Classes

Name Description Modifies Slot
GeneAnnotation An annotation describing the location, boundaries, and functions of individu... no
GenomeAnnotation Location and nomenclature of genes and all of the coding regions in a genome ... no
ThingWithTaxon A mixin that can be used on any entity that can be taxonomically classified no
Gene A region (or regions) that includes all of the sequence elements necessary to... no
Genome A genome is the sum of genetic material within a cell or virion no
BiologicalEntity no
GenomeAssembly Genome assembly to contain version and label information no

Properties

Aliases

  • instance of
  • is organism source of gene product
  • organism has gene
  • gene found in organism
  • gene product has organism source

Identifier and Mapping Information

Annotations

property value
canonical_predicate True

Schema Source

  • from schema: https://identifiers.org/brain-bican/genome-annotation-schema

Mappings

Mapping Type Mapped Value
self biolink:in_taxon
native bican:in_taxon
exact RO:0002162, WIKIDATA_PROPERTY:P703
narrow RO:0002160

LinkML Source

name: in taxon
definition_uri: https://w3id.org/biolink/vocab/in_taxon
annotations:
  canonical_predicate:
    tag: canonical_predicate
    value: true
description: connects an entity to its taxonomic classification. Only certain kinds
  of entities can be taxonomically classified; see 'thing with taxon'
in_subset:
- translator_minimal
from_schema: https://identifiers.org/brain-bican/genome-annotation-schema
aliases:
- instance of
- is organism source of gene product
- organism has gene
- gene found in organism
- gene product has organism source
exact_mappings:
- RO:0002162
- WIKIDATA_PROPERTY:P703
narrow_mappings:
- RO:0002160
rank: 1000
is_a: related to at instance level
domain: thing with taxon
slot_uri: biolink:in_taxon
inherited: true
alias: in_taxon
owner: thing with taxon
domain_of:
- thing with taxon
- biological entity
- gene
- genome
range: organism taxon
multivalued: true