Slot: enriched_cell_oligo_name
Name of cell source oligo used in cell plexing. The oligo molecularly tags all the cells in the enriched cell sample and allows separate enriched cell samples to be combined downstream in the barcoded cell sample. The oligo name is associated with a sequence in a lookup table. This sequence will be needed during alignment to associate reads with the parent source enriched cell sample.
URI: bican:enriched_cell_oligo_name
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| EnrichedCellSample | A collection of enriched cells or nuclei after enrichment process, usually vi... | no |
Properties
- Range: String
Identifier and Mapping Information
Schema Source
- from schema: https://identifiers.org/brain-bican/library-generation-schema
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | bican:enriched_cell_oligo_name |
| native | bican:enriched_cell_oligo_name |
| exact | NIMP:PD-CFCFPS27 |
LinkML Source
name: enriched_cell_oligo_name
local_names:
NIMP:
local_name_source: NIMP
local_name_value: enriched_cell_sample_cell_label_barcode
description: Name of cell source oligo used in cell plexing. The oligo molecularly
tags all the cells in the enriched cell sample and allows separate enriched cell
samples to be combined downstream in the barcoded cell sample. The oligo name is
associated with a sequence in a lookup table. This sequence will be needed during
alignment to associate reads with the parent source enriched cell sample.
from_schema: https://identifiers.org/brain-bican/library-generation-schema
exact_mappings:
- NIMP:PD-CFCFPS27
rank: 1000
alias: enriched_cell_oligo_name
owner: EnrichedCellSample
domain_of:
- EnrichedCellSample
range: string