Skip to content

Slot: category

Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the biolink entity type class. In a neo4j database this MAY correspond to the neo4j label tag. In an RDF database it should be a biolink model class URI. This field is multi-valued. It should include values for ancestors of the biolink class; for example, a protein such as Shh would have category values biolink:Protein, biolink:GeneProduct, biolink:MolecularEntity. In an RDF database, nodes will typically have an rdf:type triples. This can be to the most specific biolink class, or potentially to a class more specific than something in biolink. For example, a sequence feature f may have a rdf:type assertion to a SO class such as TF_binding_site, which is more specific than anything in biolink. Here we would have categories {biolink:GenomicEntity, biolink:MolecularEntity, biolink:NamedThing}

URI: biolink:category

Inheritance

Applicable Classes

Name Description Modifies Slot
ParcellationTerminology A parcellation terminology is a versioned release set of terms that can be us... no
DisplayColor One element of a color palette representing the association between a color a... no
GenomeAssembly Represents a genome assembly no
SpatialProportions Spatial distribution of expression, labeling, or anatomical density of a give... no
AnatomicalSpace An anatomical space is versioned release of a mathematical space with a defin... no
MatrixFile A digital file containing the representation of full or partial data matrix no
ImageDataset An image dataset is versioned release of a multidimensional regular grid of m... no
CellTypeTaxonomy A cell type taxonomy is a systematic classification of cell types and their h... no
InformationContentEntity a piece of information that typically describes some topic of discourse or is... no
Attribute A property or characteristic of an entity no
ParcellationColorScheme A parcellation color scheme is a versioned release color palette that can be ... no
ParcellationTermSet A parcellation term set is the set of parcellation terms within a specific pa... no
CellTypeSet A grouping of cell type taxons no
Checksum Checksum values associated with digital entities no
Genome A genome is the sum of genetic material within a cell or virion no
AnatomicalAnnotationSet An anatomical annotation set is a versioned release of a set of anatomical an... no
ClusteringProcess The process of organizing and classifying observations into groups or cluster... no
ParcellationAtlas A parcellation atlas is a versioned release reference used to guide experimen... no
BiologicalEntity no
ColorPalette A schematic set of display colors that can be applied to individual component... no
StudyResult A collection of data items from a study that are about a particular study sub... no
ObservationRow One specific row of the observation matrix representing a set of measurements... no
Abbreviation Maps an abbreviation string to its decoded meaning no
Entity Root Biolink Model class for all things and informational relationships, real... no
CellTypeTaxonomyCreationProcess The process of organizing cells or clusters into a systematic classification ... no
Gene A region (or regions) that includes all of the sequence elements necessary to... no
Activity An activity is something that occurs over a period of time and acts upon or w... no
VersionedNamedThing An iteration of the biolink:NamedThing class that stores metadata about the o... no
ObservationMatrix A matrix (potentially virtual) of observations no
OrganismTaxon A classification of a set of organisms no
ObservationMatrixCreationProcess The process of aggregating data to create an observation matrix (potentially ... no
GenomeAnnotation Represents a genome annotation no
NamedThing a databased entity or concept/class yes
GeneAnnotation Represents a single gene no
Dataset an item that refers to a collection of data from a data source no
ClusterSet The output of a clustering process where input observations are organized or ... no
Procedure A series of actions conducted in a certain order or manner no
MaterialSample A sample is a limited quantity of something (e no
ParcellationTerm A parcellation term is an individual term within a specific parcellation term... no
CellSpecimen ( defined as in BERS) no
CellTypeTaxon A cell type taxon is a node in a taxonomy no
RelativeFrequencyAnalysisResult A result of a relative frequency analysis no
PhysicalEntity An entity that has material reality (a no
Cluster One specific cluster from the set of clusters determined by a clustering proc... no

Properties

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/brain-bican/bke-taxonomy

Mappings

Mapping Type Mapped Value
self biolink:category
native bican:category

LinkML Source

name: category
definition_uri: https://w3id.org/biolink/vocab/category
description: Name of the high level ontology class in which this entity is categorized.
  Corresponds to the label for the biolink entity type class. In a neo4j database
  this MAY correspond to the neo4j label tag. In an RDF database it should be a biolink
  model class URI. This field is multi-valued. It should include values for ancestors
  of the biolink class; for example, a protein such as Shh would have category values
  `biolink:Protein`, `biolink:GeneProduct`, `biolink:MolecularEntity`. In an RDF database,
  nodes will typically have an rdf:type triples. This can be to the most specific
  biolink class, or potentially to a class more specific than something in biolink.
  For example, a sequence feature `f` may have a rdf:type assertion to a SO class
  such as TF_binding_site, which is more specific than anything in biolink. Here we
  would have categories {biolink:GenomicEntity, biolink:MolecularEntity, biolink:NamedThing}
in_subset:
- translator_minimal
from_schema: https://w3id.org/brain-bican/bke-taxonomy
rank: 1000
is_a: type
domain: entity
slot_uri: biolink:category
designates_type: true
alias: category
owner: entity
domain_of:
- entity
is_class_field: true
range: uriorcurie
multivalued: true