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Slot: category

Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the biolink entity type class. In a neo4j database this MAY correspond to the neo4j label tag. In an RDF database it should be a biolink model class URI. This field is multi-valued. It should include values for ancestors of the biolink class; for example, a protein such as Shh would have category values biolink:Protein, biolink:GeneProduct, biolink:MolecularEntity. In an RDF database, nodes will typically have an rdf:type triples. This can be to the most specific biolink class, or potentially to a class more specific than something in biolink. For example, a sequence feature f may have a rdf:type assertion to a SO class such as TF_binding_site, which is more specific than anything in biolink. Here we would have categories {biolink:GenomicEntity, biolink:MolecularEntity, biolink:NamedThing}. NOTE: The category slot was modified to have a curie range and a pattern for bican categories.

URI: biolink:category

Inheritance

Applicable Classes

Name Description Modifies Slot
Genome A genome is the sum of genetic material within a cell or virion no
Abbreviation Maps an abbreviation string to its decoded meaning no
ParcellationTerminology A parcellation terminology is a versioned release set of terms that can be us... no
Cluster One specific cluster from the set of clusters determined by a clustering proc... no
ParcellationTerm A parcellation term is an individual term within a specific parcellation term... no
Activity An activity is something that occurs over a period of time and acts upon or w... no
CellTypeSet A grouping of cell type taxons no
MaterialSample A sample is a limited quantity of something (e no
AnatomicalSpace An anatomical space is versioned release of a mathematical space with a defin... no
ParcellationTermSet A parcellation term set is the set of parcellation terms within a specific pa... no
AnatomicalAnnotationSet An anatomical annotation set is a versioned release of a set of anatomical an... no
CellTypeTaxonomy A cell type taxonomy is a systematic classification of cell types and their h... no
VersionedNamedThing An iteration of the biolink:NamedThing class that stores metadata about the o... no
Entity Root Biolink Model class for all things and informational relationships, real... no
CellTypeTaxonomyCreationProcess The process of organizing cells or clusters into a systematic classification ... no
Checksum Checksum values associated with digital entities no
CellSpecimen ( defined as in BERS) no
ObservationRow One specific row of the observation matrix representing a set of measurements... no
InformationContentEntity a piece of information that typically describes some topic of discourse or is... no
GenomeAssembly Represents a genome assembly no
Attribute A property or characteristic of an entity no
ClusteringProcess The process of organizing and classifying observations into groups or cluster... no
ObservationMatrixCreationProcess The process of aggregating data to create an observation matrix (potentially ... no
BiologicalEntity no
ClusterSet The output of a clustering process where input observations are organized or ... no
NamedThing a databased entity or concept/class no
ImageDataset An image dataset is versioned release of a multidimensional regular grid of m... no
OrganismTaxon A classification of a set of organisms no
GeneAnnotation Represents a single gene no
CellTypeTaxon A cell type taxon is a node in a taxonomy no
MatrixFile A digital file containing the representation of full or partial data matrix no
Gene A region (or regions) that includes all of the sequence elements necessary to... no
Procedure A series of actions conducted in a certain order or manner no
ObservationMatrix A matrix (potentially virtual) of observations no
ParcellationColorScheme A parcellation color scheme is a versioned release color palette that can be ... no
PhysicalEntity An entity that has material reality (a no
GenomeAnnotation Represents a genome annotation no
ColorPalette A schematic set of display colors that can be applied to individual component... no
DisplayColor One element of a color palette representing the association between a color a... no
Dataset an item that refers to a collection of data from a data source no
ParcellationAtlas A parcellation atlas is a versioned release reference used to guide experimen... no

Properties

  • Range: Curie

  • Multivalued: True

  • Regex pattern: ^bican:[A-Z][A-Za-z]+$

Identifier and Mapping Information

Schema Source

  • from schema: https:/w3id.org/brain-bican/bke-taxonomy

Mappings

Mapping Type Mapped Value
self biolink:category
native bican:category

LinkML Source

name: category
definition_uri: https://w3id.org/biolink/vocab/category
description: 'Name of the high level ontology class in which this entity is categorized.
  Corresponds to the label for the biolink entity type class. In a neo4j database
  this MAY correspond to the neo4j label tag. In an RDF database it should be a biolink
  model class URI. This field is multi-valued. It should include values for ancestors
  of the biolink class; for example, a protein such as Shh would have category values
  `biolink:Protein`, `biolink:GeneProduct`, `biolink:MolecularEntity`. In an RDF database,
  nodes will typically have an rdf:type triples. This can be to the most specific
  biolink class, or potentially to a class more specific than something in biolink.
  For example, a sequence feature `f` may have a rdf:type assertion to a SO class
  such as TF_binding_site, which is more specific than anything in biolink. Here we
  would have categories {biolink:GenomicEntity, biolink:MolecularEntity, biolink:NamedThing}.
  NOTE: The category slot was modified to have a curie range and a pattern for bican
  categories.'
in_subset:
- translator_minimal
from_schema: https:/w3id.org/brain-bican/bke-taxonomy
rank: 1000
is_a: type
domain: entity
slot_uri: biolink:category
designates_type: true
alias: category
owner: entity
domain_of:
- entity
- attribute
- named thing
- organism taxon
- information content entity
- dataset
- physical entity
- activity
- procedure
- material sample
- biological entity
- gene
- genome
is_class_field: true
range: curie
multivalued: true
pattern: ^bican:[A-Z][A-Za-z]+$