BKE Taxonomy

erDiagram DisplayColor { string id string color_hex_triplet uriorcurieList xref iri_type iri curieList category stringList type label_type name narrative_text description boolean deprecated stringList provided_by label_type full_name label_typeList synonym } ProvActivity { } ProvEntity { } ColorPalette { string id string name string description uriorcurieList xref iri_type iri curieList category stringList type boolean deprecated stringList provided_by label_type full_name label_typeList synonym } MatrixFile { stringList content_url string id iri_type iri curieList category stringList type label_type name narrative_text description boolean deprecated stringList provided_by uriorcurieList xref label_type full_name label_typeList synonym } Abbreviation { string id string term string meaning string entity_type uriorcurieList xref iri_type iri curieList category stringList type label_type name narrative_text description boolean deprecated stringList provided_by label_type full_name label_typeList synonym } ParcellationTerm { string id iri_type iri curieList category stringList type label_type name narrative_text description boolean deprecated stringList provided_by uriorcurieList xref label_type full_name label_typeList synonym } CellSpecimen { string id iri_type iri curieList category stringList type label_type name narrative_text description boolean deprecated stringList provided_by uriorcurieList xref label_type full_name label_typeList synonym } ObservationRow { string label string id iri_type iri curieList category stringList type label_type name narrative_text description boolean deprecated stringList provided_by uriorcurieList xref label_type full_name label_typeList synonym } ObservationMatrix { stringList content_url string id iri_type iri curieList category stringList type label_type name narrative_text description boolean deprecated stringList provided_by uriorcurieList xref label_type full_name label_typeList synonym } ObservationMatrixCreationProcess { string id iri_type iri curieList category stringList type label_type name narrative_text description boolean deprecated stringList provided_by uriorcurieList xref label_type full_name label_typeList synonym } Cluster { string id string accession_id string name integer number_of_observations uriorcurieList xref iri_type iri curieList category stringList type narrative_text description boolean deprecated stringList provided_by label_type full_name label_typeList synonym } ClusterSet { string id datetime created_at string accession_id string name string description uriorcurieList xref iri_type iri curieList category stringList type boolean deprecated stringList provided_by label_type full_name label_typeList synonym } ClusteringProcess { string id iri_type iri curieList category stringList type label_type name narrative_text description boolean deprecated stringList provided_by uriorcurieList xref label_type full_name label_typeList synonym } CellTypeTaxon { string id string accession_id string name integer order string description integer number_of_cells uriorcurieList xref iri_type iri curieList category stringList type boolean deprecated stringList provided_by label_type full_name label_typeList synonym } CellTypeSet { string id string accession_id string name string description string cell_type_set_type integer order uriorcurieList xref iri_type iri curieList category stringList type boolean deprecated stringList provided_by label_type full_name label_typeList synonym } CellTypeTaxonomy { string id datetime created_at string accession_id string name string description uriorcurieList xref iri_type iri curieList category stringList type boolean deprecated stringList provided_by label_type full_name label_typeList synonym } CellTypeTaxonomyCreationProcess { string id iri_type iri curieList category stringList type label_type name narrative_text description boolean deprecated stringList provided_by uriorcurieList xref label_type full_name label_typeList synonym } DisplayColor ||--|o ColorPalette : "part_of_palette" DisplayColor ||--|o CellTypeTaxon : "is_color_for_taxon" DisplayColor ||--|o CellTypeSet : "is_color_for_set" DisplayColor ||--|o ProvEntity : "was_derived_from" DisplayColor ||--|o ProvActivity : "was_generated_by" DisplayColor ||--}o Attribute : "has attribute" ProvActivity ||--|o ProvEntity : "used" ProvEntity ||--|o ProvEntity : "was_derived_from" ProvEntity ||--|o ProvActivity : "was_generated_by" ColorPalette ||--|o CellTypeTaxonomy : "is_palette_for" ColorPalette ||--|o ProvEntity : "was_derived_from" ColorPalette ||--|o ProvActivity : "was_generated_by" ColorPalette ||--}o Attribute : "has attribute" MatrixFile ||--|o ProvEntity : "was_derived_from" MatrixFile ||--|o ProvActivity : "was_generated_by" MatrixFile ||--}o Attribute : "has attribute" Abbreviation ||--}o GeneAnnotation : "denotes_gene_annotation" Abbreviation ||--}o ParcellationTerm : "denotes_parcellation_term" Abbreviation ||--|o ProvEntity : "was_derived_from" Abbreviation ||--|o ProvActivity : "was_generated_by" Abbreviation ||--}o Attribute : "has attribute" ParcellationTerm ||--|o ProvEntity : "was_derived_from" ParcellationTerm ||--|o ProvActivity : "was_generated_by" ParcellationTerm ||--}o Attribute : "has attribute" CellSpecimen ||--|o ProvEntity : "was_derived_from" CellSpecimen ||--|o ProvActivity : "was_generated_by" CellSpecimen ||--}o Attribute : "has attribute" ObservationRow ||--|o ObservationMatrix : "part_of_matrix" ObservationRow ||--|o MatrixFile : "represented_in" ObservationRow ||--|o CellSpecimen : "was_derived_from" ObservationRow ||--|o ProvActivity : "was_generated_by" ObservationRow ||--}o Attribute : "has attribute" ObservationMatrix ||--|o ObservationMatrixCreationProcess : "was_generated_by" ObservationMatrix ||--}o MatrixFile : "represented_by" ObservationMatrix ||--}o GeneAnnotation : "has_variable" ObservationMatrix ||--}o CellSpecimen : "was_derived_from" ObservationMatrix ||--}o Attribute : "has attribute" ObservationMatrixCreationProcess ||--|o ProvEntity : "used" ObservationMatrixCreationProcess ||--}o Attribute : "has attribute" Cluster ||--|o ClusterSet : "part_of_set" Cluster ||--}o ObservationRow : "contains_observation" Cluster ||--}o CellSpecimen : "contains_sample" Cluster ||--|o ProvEntity : "was_derived_from" Cluster ||--|o ProvActivity : "was_generated_by" Cluster ||--}o Attribute : "has attribute" ClusterSet ||--|o ClusteringProcess : "was_generated_by" ClusterSet ||--}o ObservationMatrix : "was_derived_from" ClusterSet ||--|o ClusterSet : "is_revision_of" ClusterSet ||--}o Attribute : "has attribute" ClusteringProcess ||--}o ObservationMatrix : "used" ClusteringProcess ||--}o Attribute : "has attribute" CellTypeTaxon ||--|o CellTypeTaxonomy : "part_of_taxonomy" CellTypeTaxon ||--}o Cluster : "contains_cluster" CellTypeTaxon ||--|o CellTypeTaxon : "has_parent" CellTypeTaxon ||--}o Abbreviation : "has_abbreviation" CellTypeTaxon ||--|o ProvEntity : "was_derived_from" CellTypeTaxon ||--|o ProvActivity : "was_generated_by" CellTypeTaxon ||--}o Attribute : "has attribute" CellTypeSet ||--|o CellTypeTaxonomy : "part_of_taxonomy" CellTypeSet ||--}o CellTypeTaxon : "contains_taxon" CellTypeSet ||--|o CellTypeSet : "has_parent" CellTypeSet ||--}o Abbreviation : "has_abbreviation" CellTypeSet ||--|o ProvEntity : "was_derived_from" CellTypeSet ||--|o ProvActivity : "was_generated_by" CellTypeSet ||--}o Attribute : "has attribute" CellTypeTaxonomy ||--|o CellTypeTaxonomyCreationProcess : "was_generated_by" CellTypeTaxonomy ||--}o ClusterSet : "was_derived_from" CellTypeTaxonomy ||--|o CellTypeTaxonomy : "is_revision_of" CellTypeTaxonomy ||--}o Attribute : "has attribute" CellTypeTaxonomyCreationProcess ||--}o ClusterSet : "used" CellTypeTaxonomyCreationProcess ||--}o Attribute : "has attribute"