Class: ProvEntity
An entity is a physical, digital, conceptual, or other kind of thing with some fixed aspects; entities may be real or imaginary.
URI: prov:Entity
classDiagram
class ProvEntity
click ProvEntity href "../ProvEntity"
ProvEntity <|-- CellTypeTaxonomy
click CellTypeTaxonomy href "../CellTypeTaxonomy"
ProvEntity <|-- CellTypeSet
click CellTypeSet href "../CellTypeSet"
ProvEntity <|-- CellTypeTaxon
click CellTypeTaxon href "../CellTypeTaxon"
ProvEntity <|-- ClusterSet
click ClusterSet href "../ClusterSet"
ProvEntity <|-- Cluster
click Cluster href "../Cluster"
ProvEntity <|-- ObservationMatrix
click ObservationMatrix href "../ObservationMatrix"
ProvEntity <|-- ObservationRow
click ObservationRow href "../ObservationRow"
ProvEntity <|-- CellSpecimen
click CellSpecimen href "../CellSpecimen"
ProvEntity <|-- ParcellationTerm
click ParcellationTerm href "../ParcellationTerm"
ProvEntity <|-- Abbreviation
click Abbreviation href "../Abbreviation"
ProvEntity <|-- MatrixFile
click MatrixFile href "../MatrixFile"
ProvEntity <|-- ColorPalette
click ColorPalette href "../ColorPalette"
ProvEntity <|-- DisplayColor
click DisplayColor href "../DisplayColor"
ProvEntity : was_derived_from
ProvEntity --> "0..1" ProvEntity : was_derived_from
click ProvEntity href "../ProvEntity"
ProvEntity : was_generated_by
ProvEntity --> "0..1" ProvActivity : was_generated_by
click ProvActivity href "../ProvActivity"
Slots
| Name | Cardinality and Range | Description | Inheritance |
|---|---|---|---|
| was_derived_from | 0..1 ProvEntity |
A derivation is a transformation of an entity into another, an update of an e... | direct |
| was_generated_by | 0..1 ProvActivity |
Generation is the completion of production of a new entity by an activity | direct |
Mixin Usage
| mixed into | description |
|---|---|
| CellTypeTaxonomy | A cell type taxonomy is a systematic classification of cell types and their h... |
| CellTypeSet | A grouping of cell type taxons |
| CellTypeTaxon | A cell type taxon is a node in a taxonomy |
| ClusterSet | The output of a clustering process where input observations are organized or ... |
| Cluster | One specific cluster from the set of clusters determined by a clustering proc... |
| ObservationMatrix | A matrix (potentially virtual) of observations |
| ObservationRow | One specific row of the observation matrix representing a set of measurements... |
| CellSpecimen | ( defined as in BERS) |
| ParcellationTerm | ( defined in AnSRS ) |
| Abbreviation | Maps an abbreviation string to its decoded meaning |
| MatrixFile | A digital file containing the representation of full or partial data matrix |
| ColorPalette | A schematic set of display colors that can be applied to individual component... |
| DisplayColor | One element of a color palette representing the association between a color a... |
Usages
| used by | used in | type | used |
|---|---|---|---|
| CellTypeSet | was_derived_from | range | ProvEntity |
| CellTypeTaxon | was_derived_from | range | ProvEntity |
| Cluster | was_derived_from | range | ProvEntity |
| ObservationMatrixCreationProcess | used | range | ProvEntity |
| CellSpecimen | was_derived_from | range | ProvEntity |
| ParcellationTerm | was_derived_from | range | ProvEntity |
| Abbreviation | was_derived_from | range | ProvEntity |
| MatrixFile | was_derived_from | range | ProvEntity |
| ColorPalette | was_derived_from | range | ProvEntity |
| DisplayColor | was_derived_from | range | ProvEntity |
| ProvActivity | used | range | ProvEntity |
| ProvEntity | was_derived_from | range | ProvEntity |
Identifier and Mapping Information
Schema Source
- from schema: https:/w3id.org/brain-bican/bke-taxonomy
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | prov:Entity |
| native | bican:ProvEntity |
LinkML Source
Direct
name: ProvEntity
description: An entity is a physical, digital, conceptual, or other kind of thing
with some fixed aspects; entities may be real or imaginary.
from_schema: https:/w3id.org/brain-bican/bke-taxonomy
mixin: true
slots:
- was_derived_from
- was_generated_by
class_uri: prov:Entity
Induced
name: ProvEntity
description: An entity is a physical, digital, conceptual, or other kind of thing
with some fixed aspects; entities may be real or imaginary.
from_schema: https:/w3id.org/brain-bican/bke-taxonomy
mixin: true
attributes:
was_derived_from:
name: was_derived_from
description: A derivation is a transformation of an entity into another, an update
of an entity resulting in a new one, or the construction of a new entity based
on a pre-existing entity.
from_schema: https:/w3id.org/brain-bican/bke-taxonomy
rank: 1000
slot_uri: prov:wasDerivedFrom
alias: was_derived_from
owner: ProvEntity
domain_of:
- CellTypeTaxonomy
- ClusterSet
- ObservationMatrix
- ObservationRow
- ProvEntity
range: ProvEntity
was_generated_by:
name: was_generated_by
description: Generation is the completion of production of a new entity by an
activity. This entity did not exist before generation and becomes available
for usage after this generation.
from_schema: https:/w3id.org/brain-bican/bke-taxonomy
rank: 1000
slot_uri: prov:wasGeneratedBy
alias: was_generated_by
owner: ProvEntity
domain_of:
- CellTypeTaxonomy
- ClusterSet
- ObservationMatrix
- ProvEntity
range: ProvActivity
class_uri: prov:Entity