Class: ProvEntity
An entity is a physical, digital, conceptual, or other kind of thing with some fixed aspects; entities may be real or imaginary.
URI: prov:Entity
classDiagram
class ProvEntity
click ProvEntity href "../ProvEntity"
ProvEntity <|-- Donor
click Donor href "../Donor"
ProvEntity <|-- BrainSlab
click BrainSlab href "../BrainSlab"
ProvEntity <|-- TissueSample
click TissueSample href "../TissueSample"
ProvEntity <|-- DissociatedCellSample
click DissociatedCellSample href "../DissociatedCellSample"
ProvEntity <|-- EnrichedCellSample
click EnrichedCellSample href "../EnrichedCellSample"
ProvEntity <|-- BarcodedCellSample
click BarcodedCellSample href "../BarcodedCellSample"
ProvEntity <|-- AmplifiedCdna
click AmplifiedCdna href "../AmplifiedCdna"
ProvEntity <|-- Library
click Library href "../Library"
ProvEntity <|-- LibraryAliquot
click LibraryAliquot href "../LibraryAliquot"
ProvEntity <|-- LibraryPool
click LibraryPool href "../LibraryPool"
ProvEntity <|-- DissectionRoiPolygon
click DissectionRoiPolygon href "../DissectionRoiPolygon"
ProvEntity : was_derived_from
ProvEntity --> "0..1" ProvEntity : was_derived_from
click ProvEntity href "../ProvEntity"
ProvEntity : was_generated_by
ProvEntity --> "0..1" ProvActivity : was_generated_by
click ProvActivity href "../ProvActivity"
Slots
| Name | Cardinality and Range | Description | Inheritance |
|---|---|---|---|
| was_derived_from | 0..1 ProvEntity |
A derivation is a transformation of an entity into another, an update of an e... | direct |
| was_generated_by | 0..1 ProvActivity |
Generation is the completion of production of a new entity by an activity | direct |
Mixin Usage
| mixed into | description |
|---|---|
| Donor | A person or organism that is the source of a biological sample for scientific... |
| BrainSlab | A thick flat piece of brain tissue obtained by slicing a whole brain, brain h... |
| TissueSample | The final intact piece of tissue before cell or nuclei prep |
| DissociatedCellSample | A collection of dissociated cells or nuclei derived from dissociation of a ti... |
| EnrichedCellSample | A collection of enriched cells or nuclei after enrichment process, usually vi... |
| BarcodedCellSample | A collection of molecularly barcoded cells |
| AmplifiedCdna | A collection of cDNA molecules derived and amplified from an input barcoded c... |
| Library | A collection of fragmented and barcode-indexed DNA molecules for sequencing |
| LibraryAliquot | One library in the library pool |
| LibraryPool | A library pool is made up of library aliquots from multiple libraries |
| DissectionRoiPolygon | A polygon annotated on a brain slab image delineating a region of interest (R... |
Usages
| used by | used in | type | used |
|---|---|---|---|
| Donor | was_derived_from | range | ProvEntity |
| EnrichedCellSample | was_derived_from | range | ProvEntity |
| BarcodedCellSample | was_derived_from | range | ProvEntity |
| Library | was_derived_from | range | ProvEntity |
| CellBarcoding | used | range | ProvEntity |
| LibraryConstruction | used | range | ProvEntity |
| DissectionRoiPolygon | was_derived_from | range | ProvEntity |
| ProvActivity | used | range | ProvEntity |
| ProvEntity | was_derived_from | range | ProvEntity |
Identifier and Mapping Information
Schema Source
- from schema: https://identifiers.org/brain-bican/library-generation-schema
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | prov:Entity |
| native | bican:ProvEntity |
LinkML Source
Direct
name: ProvEntity
description: An entity is a physical, digital, conceptual, or other kind of thing
with some fixed aspects; entities may be real or imaginary.
from_schema: https://identifiers.org/brain-bican/library-generation-schema
mixin: true
slots:
- was_derived_from
- was_generated_by
class_uri: prov:Entity
Induced
name: ProvEntity
description: An entity is a physical, digital, conceptual, or other kind of thing
with some fixed aspects; entities may be real or imaginary.
from_schema: https://identifiers.org/brain-bican/library-generation-schema
mixin: true
attributes:
was_derived_from:
name: was_derived_from
description: A derivation is a transformation of an entity into another, an update
of an entity resulting in a new one, or the construction of a new entity based
on a pre-existing entity.
from_schema: https://identifiers.org/brain-bican/library-generation-schema
rank: 1000
slot_uri: prov:wasDerivedFrom
alias: was_derived_from
owner: ProvEntity
domain_of:
- BrainSlab
- TissueSample
- DissociatedCellSample
- EnrichedCellSample
- BarcodedCellSample
- AmplifiedCdna
- Library
- LibraryAliquot
- LibraryPool
- ProvEntity
range: ProvEntity
was_generated_by:
name: was_generated_by
description: Generation is the completion of production of a new entity by an
activity. This entity did not exist before generation and becomes available
for usage after this generation.
from_schema: https://identifiers.org/brain-bican/library-generation-schema
rank: 1000
slot_uri: prov:wasGeneratedBy
alias: was_generated_by
owner: ProvEntity
domain_of:
- TissueSample
- DissociatedCellSample
- EnrichedCellSample
- BarcodedCellSample
- AmplifiedCdna
- Library
- LibraryPool
- DissectionRoiPolygon
- ProvEntity
range: ProvActivity
class_uri: prov:Entity