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Class: ParcellationAtlas

A parcellation atlas is a versioned release reference used to guide experiments or deal with the spatial relationship between objects or the location of objects within the context of some anatomical structure. An atlas is minimally defined by a notion of space (either implicit or explicit) and an annotation set. Reference atlases usually have additional parts that make them more useful in certain situations, such as a well defined coordinate system, delineations indicating the boundaries of various regions or cell populations, landmarks, and labels and names to make it easier to communicate about well known and useful locations (ref: ILX:0777109, RRID:SCR_023499).

URI: AnS:ParcellationAtlas

classDiagram class ParcellationAtlas click ParcellationAtlas href "../ParcellationAtlas" VersionedNamedThing <|-- ParcellationAtlas click VersionedNamedThing href "../VersionedNamedThing" ParcellationAtlas : category ParcellationAtlas : description ParcellationAtlas : has_anatomical_annotation_set ParcellationAtlas : has_anatomical_space ParcellationAtlas : has_parcellation_terminology ParcellationAtlas : id ParcellationAtlas : name ParcellationAtlas : revision_of ParcellationAtlas --> "0..1" VersionedNamedThing : revision_of click VersionedNamedThing href "../VersionedNamedThing" ParcellationAtlas : specialization_of ParcellationAtlas : version

Inheritance

Slots

Name Cardinality and Range Description Inheritance
has_anatomical_space 1
String or 
AnatomicalSpace or 
String		 Reference to the anatomical space component of the parcellation atlas direct
has_anatomical_annotation_set 1
String or 
AnatomicalAnnotationSet or 
String		 Reference to the anatomical annotation set component of the parcellation atla... direct
has_parcellation_terminology 1
String or 
ParcellationTerminology or 
String		 Reference to the parcellation terminology component of the parcellation atlas direct
specialization_of 0..1
String or 
ParcellationAtlas or 
String		 Reference to the general (non versioned) parcellation atlas for which the par... direct
version 1
String		 VersionedNamedThing
revision_of 0..1
VersionedNamedThing or 
ParcellationAtlas or 
String		 VersionedNamedThing
id 1
Uriorcurie		 NamedThing
name 1
String		 NamedThing
description 1
String		 NamedThing
category *
Uriorcurie		 NamedThing

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/my-org/anatomical-structure-schema

Mappings

Mapping Type Mapped Value
self AnS:ParcellationAtlas
native AnS:ParcellationAtlas

LinkML Source

Direct

name: ParcellationAtlas
description: 'A parcellation atlas is a versioned release reference used to guide
  experiments or deal with the spatial relationship between  objects or the location
  of objects within the context of some anatomical structure. An atlas is minimally
  defined by a notion  of space (either implicit or explicit) and an annotation set.
  Reference atlases usually have additional parts that make them  more useful in certain
  situations, such as a well defined coordinate system, delineations indicating the
  boundaries of various  regions or cell populations, landmarks, and labels and names
  to make it easier to communicate about well known and useful  locations (ref: ILX:0777109,
  RRID:SCR_023499).'
from_schema: https://w3id.org/my-org/anatomical-structure-schema
is_a: VersionedNamedThing
slot_usage:
  revision_of:
    name: revision_of
    domain_of:
    - VersionedNamedThing
    any_of:
    - range: ParcellationAtlas
    - range: string
attributes:
  has_anatomical_space:
    name: has_anatomical_space
    description: Reference to the anatomical space component of the parcellation atlas
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    domain_of:
    - ParcellationAtlas
    required: true
    any_of:
    - range: AnatomicalSpace
    - range: string
  has_anatomical_annotation_set:
    name: has_anatomical_annotation_set
    description: Reference to the anatomical annotation set component of the parcellation
      atlas
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    domain_of:
    - ParcellationAtlas
    required: true
    any_of:
    - range: AnatomicalAnnotationSet
    - range: string
  has_parcellation_terminology:
    name: has_parcellation_terminology
    description: Reference to the parcellation terminology component of the parcellation
      atlas
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    domain_of:
    - ParcellationAtlas
    required: true
    any_of:
    - range: ParcellationTerminology
    - range: string
  specialization_of:
    name: specialization_of
    description: Reference to the general (non versioned) parcellation atlas for which
      the parcellation atlas is a specific  version release of.
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    domain_of:
    - ParcellationAtlas
    any_of:
    - range: ParcellationAtlas
    - range: string

Induced

name: ParcellationAtlas
description: 'A parcellation atlas is a versioned release reference used to guide
  experiments or deal with the spatial relationship between  objects or the location
  of objects within the context of some anatomical structure. An atlas is minimally
  defined by a notion  of space (either implicit or explicit) and an annotation set.
  Reference atlases usually have additional parts that make them  more useful in certain
  situations, such as a well defined coordinate system, delineations indicating the
  boundaries of various  regions or cell populations, landmarks, and labels and names
  to make it easier to communicate about well known and useful  locations (ref: ILX:0777109,
  RRID:SCR_023499).'
from_schema: https://w3id.org/my-org/anatomical-structure-schema
is_a: VersionedNamedThing
slot_usage:
  revision_of:
    name: revision_of
    domain_of:
    - VersionedNamedThing
    any_of:
    - range: ParcellationAtlas
    - range: string
attributes:
  has_anatomical_space:
    name: has_anatomical_space
    description: Reference to the anatomical space component of the parcellation atlas
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    alias: has_anatomical_space
    owner: ParcellationAtlas
    domain_of:
    - ParcellationAtlas
    range: string
    required: true
    any_of:
    - range: AnatomicalSpace
    - range: string
  has_anatomical_annotation_set:
    name: has_anatomical_annotation_set
    description: Reference to the anatomical annotation set component of the parcellation
      atlas
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    alias: has_anatomical_annotation_set
    owner: ParcellationAtlas
    domain_of:
    - ParcellationAtlas
    range: string
    required: true
    any_of:
    - range: AnatomicalAnnotationSet
    - range: string
  has_parcellation_terminology:
    name: has_parcellation_terminology
    description: Reference to the parcellation terminology component of the parcellation
      atlas
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    alias: has_parcellation_terminology
    owner: ParcellationAtlas
    domain_of:
    - ParcellationAtlas
    range: string
    required: true
    any_of:
    - range: ParcellationTerminology
    - range: string
  specialization_of:
    name: specialization_of
    description: Reference to the general (non versioned) parcellation atlas for which
      the parcellation atlas is a specific  version release of.
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    alias: specialization_of
    owner: ParcellationAtlas
    domain_of:
    - ParcellationAtlas
    range: string
    any_of:
    - range: ParcellationAtlas
    - range: string
  version:
    name: version
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    alias: version
    owner: ParcellationAtlas
    domain_of:
    - VersionedNamedThing
    range: string
    required: true
  revision_of:
    name: revision_of
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    alias: revision_of
    owner: ParcellationAtlas
    domain_of:
    - VersionedNamedThing
    range: VersionedNamedThing
    any_of:
    - range: ParcellationAtlas
    - range: string
  id:
    name: id
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    identifier: true
    alias: id
    owner: ParcellationAtlas
    domain_of:
    - NamedThing
    range: uriorcurie
    required: true
  name:
    name: name
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    alias: name
    owner: ParcellationAtlas
    domain_of:
    - NamedThing
    range: string
    required: true
  description:
    name: description
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    alias: description
    owner: ParcellationAtlas
    domain_of:
    - NamedThing
    range: string
    required: true
  category:
    name: category
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    multivalued: true
    designates_type: true
    alias: category
    owner: ParcellationAtlas
    domain_of:
    - NamedThing
    is_class_field: true
    range: uriorcurie