Class: ParcellationAnnotation

A parcellation annotation defines a specific segment of an anatomical space denoted by an internal identifier and is a unique and exclusive member of a versioned release anatomical annotation set. For example, in the case where the anatomical annotation set is a single multi-value image mask (e.g. Allen Mouse CCF), a specific annotation corresponds to a specific label index (internal identifier) in the mask.

URI: AnS:ParcellationAnnotation

classDiagram class ParcellationAnnotation click ParcellationAnnotation href "../ParcellationAnnotation" ParcellationAnnotation : internal_identifier ParcellationAnnotation : part_of_anatomical_annotation_set ParcellationAnnotation : voxel_count

Slots

Name	Cardinality and Range	Description	Inheritance
part_of_anatomical_annotation_set	1 String or AnatomicalAnnotationSet or String		direct
internal_identifier	1 String	An identifier that uniquely denotes a specific parcellation annotation within...	direct
voxel_count	0..1 Integer	The number of voxels (3D pixels) spanned by the parcellation annotation (opti...	direct

Usages

used by	used in	type	used
ParcellationAnnotationTermMap	subject_parcellation_annotation	any_of[range]	ParcellationAnnotation

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/my-org/anatomical-structure-schema

Mappings

Mapping Type	Mapped Value
self	AnS:ParcellationAnnotation
native	AnS:ParcellationAnnotation

LinkML Source

Direct

name: ParcellationAnnotation
description: A parcellation annotation defines a specific segment of an anatomical
  space denoted by an internal  identifier and is a unique and exclusive member of
  a versioned release anatomical annotation set.  For example, in the case where the
  anatomical annotation set is a single multi-value image mask (e.g. Allen Mouse CCF),
  a specific annotation corresponds to a specific label index (internal identifier)
  in the mask.
from_schema: https://w3id.org/my-org/anatomical-structure-schema
attributes:
  part_of_anatomical_annotation_set:
    name: part_of_anatomical_annotation_set
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    domain_of:
    - ParcellationAnnotation
    required: true
    any_of:
    - range: AnatomicalAnnotationSet
    - range: string
  internal_identifier:
    name: internal_identifier
    description: An identifier that uniquely denotes a specific parcellation annotation
      within the context of an anatomical annotation set
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    domain_of:
    - ParcellationAnnotation
    required: true
  voxel_count:
    name: voxel_count
    description: The number of voxels (3D pixels) spanned by the parcellation annotation
      (optional).
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    domain_of:
    - ParcellationAnnotation
    range: integer
    minimum_value: 0

Induced

name: ParcellationAnnotation
description: A parcellation annotation defines a specific segment of an anatomical
  space denoted by an internal  identifier and is a unique and exclusive member of
  a versioned release anatomical annotation set.  For example, in the case where the
  anatomical annotation set is a single multi-value image mask (e.g. Allen Mouse CCF),
  a specific annotation corresponds to a specific label index (internal identifier)
  in the mask.
from_schema: https://w3id.org/my-org/anatomical-structure-schema
attributes:
  part_of_anatomical_annotation_set:
    name: part_of_anatomical_annotation_set
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    alias: part_of_anatomical_annotation_set
    owner: ParcellationAnnotation
    domain_of:
    - ParcellationAnnotation
    range: string
    required: true
    any_of:
    - range: AnatomicalAnnotationSet
    - range: string
  internal_identifier:
    name: internal_identifier
    description: An identifier that uniquely denotes a specific parcellation annotation
      within the context of an anatomical annotation set
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    alias: internal_identifier
    owner: ParcellationAnnotation
    domain_of:
    - ParcellationAnnotation
    range: string
    required: true
  voxel_count:
    name: voxel_count
    description: The number of voxels (3D pixels) spanned by the parcellation annotation
      (optional).
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    alias: voxel_count
    owner: ParcellationAnnotation
    domain_of:
    - ParcellationAnnotation
    range: integer
    minimum_value: 0