Class: Library
A collection of fragmented and barcode-indexed DNA molecules for sequencing. An index or barcode is typically introduced to enable identification of library origin to allow libraries to be pooled together for sequencing.
URI: bican:Library
classDiagram
class Library
click Library href "../Library"
ProvEntity <|-- Library
click ProvEntity href "../ProvEntity"
MaterialSample <|-- Library
click MaterialSample href "../MaterialSample"
Library : average_size_bp
Library : category
Library : concentration_nm
Library : deprecated
Library : description
Library : full_name
Library : has_attribute
Library --> "*" Attribute : has_attribute
click Attribute href "../Attribute"
Library : id
Library : iri
Library : name
Library : pass_fail_result
Library --> "0..1" LibraryPrepPassFail : pass_fail_result
click LibraryPrepPassFail href "../LibraryPrepPassFail"
Library : provided_by
Library : quantity_fmol
Library : quantity_ng
Library : r1_r2_index
Library --> "0..1" LibraryR1R2Index : r1_r2_index
click LibraryR1R2Index href "../LibraryR1R2Index"
Library : synonym
Library : type
Library : was_derived_from
Library --> "0..1" ProvEntity : was_derived_from
click ProvEntity href "../ProvEntity"
Library : was_generated_by
Library --> "0..1" LibraryConstruction : was_generated_by
click LibraryConstruction href "../LibraryConstruction"
Library : xref
Inheritance
- Entity
- NamedThing
- PhysicalEntity [ PhysicalEssence]
- MaterialSample [ SubjectOfInvestigation]
- Library [ ProvEntity]
- MaterialSample [ SubjectOfInvestigation]
- PhysicalEntity [ PhysicalEssence]
- NamedThing
Slots
Name | Cardinality and Range | Description | Inheritance |
---|---|---|---|
was_generated_by | 0..1 LibraryConstruction |
The library construction process from which the library was generated by | direct |
was_derived_from | 0..1 ProvEntity or BarcodedCellSample or AmplifiedCdna |
The input barcoded cell sample or amplified cDNA from which the library was d... | direct |
name | 0..1 LabelType |
Name of a library, which is a collection of fragmented and barcode-indexed DN... | direct |
average_size_bp | 0..1 Integer |
Average size of the library in terms of base pairs | direct |
concentration_nm | 0..1 Float |
Concentration of library in terms of nM (nMol/L) | direct |
pass_fail_result | 0..1 LibraryPrepPassFail |
Pass or Fail result based on qualitative assessment of library yield and size | direct |
quantity_fmol | 0..1 Float |
Amount of library generated in terms of femtomoles | direct |
quantity_ng | 0..1 Float |
Amount of library generated in terms of nanograms | direct |
r1_r2_index | 0..1 LibraryR1R2Index |
Name of the pair of library indexes used for sequencing | direct |
id | 1 String |
A unique identifier for an entity | MaterialSample, PhysicalEntity, Entity, NamedThing |
iri | 0..1 IriType |
An IRI for an entity | MaterialSample, PhysicalEntity, Entity, NamedThing |
category | * Uriorcurie |
Name of the high level ontology class in which this entity is categorized | MaterialSample, PhysicalEntity, Entity, NamedThing |
type | * String |
MaterialSample, PhysicalEntity, Entity, NamedThing | |
description | 0..1 NarrativeText |
a human-readable description of an entity | MaterialSample, PhysicalEntity, Entity, NamedThing |
has_attribute | * Attribute |
connects any entity to an attribute | MaterialSample, PhysicalEntity, Entity, NamedThing |
deprecated | 0..1 Boolean |
A boolean flag indicating that an entity is no longer considered current or v... | MaterialSample, PhysicalEntity, Entity, NamedThing |
provided_by | * String |
The value in this node property represents the knowledge provider that create... | MaterialSample, PhysicalEntity, NamedThing |
xref | * Uriorcurie |
A database cross reference or alternative identifier for a NamedThing or edge... | MaterialSample, PhysicalEntity, NamedThing |
full_name | 0..1 LabelType |
a long-form human readable name for a thing | MaterialSample, PhysicalEntity, NamedThing |
synonym | * LabelType |
Alternate human-readable names for a thing | MaterialSample, PhysicalEntity, NamedThing |
Usages
used by | used in | type | used |
---|---|---|---|
LibraryAliquot | was_derived_from | range | Library |
Identifier and Mapping Information
Schema Source
- from schema: https://identifiers.org/brain-bican/library-generation-schema
Mappings
Mapping Type | Mapped Value |
---|---|
self | bican:Library |
native | bican:Library |
exact | NIMP:Library |
LinkML Source
Direct
name: Library
description: A collection of fragmented and barcode-indexed DNA molecules for sequencing.
An index or barcode is typically introduced to enable identification of library
origin to allow libraries to be pooled together for sequencing.
in_subset:
- bican
- library_generation
from_schema: https://identifiers.org/brain-bican/library-generation-schema
exact_mappings:
- NIMP:Library
is_a: material sample
mixins:
- ProvEntity
slots:
- was_generated_by
- was_derived_from
- name
slot_usage:
was_generated_by:
name: was_generated_by
description: The library construction process from which the library was generated
by.
domain_of:
- TissueSample
- DissociatedCellSample
- EnrichedCellSample
- BarcodedCellSample
- AmplifiedCdna
- Library
- LibraryPool
- DissectionRoiPolygon
- ProvEntity
range: LibraryConstruction
was_derived_from:
name: was_derived_from
description: The input barcoded cell sample or amplified cDNA from which the library
was derived from.
exact_mappings:
- NIMP:has_parent
domain_of:
- BrainSlab
- TissueSample
- DissociatedCellSample
- EnrichedCellSample
- BarcodedCellSample
- AmplifiedCdna
- Library
- LibraryAliquot
- LibraryPool
- DigitalAsset
- ProvEntity
any_of:
- range: BarcodedCellSample
- range: AmplifiedCdna
name:
name: name
local_names:
NIMP:
local_name_source: NIMP
local_name_value: library_local_name
description: Name of a library, which is a collection of fragmented and barcode-indexed
DNA molecules for sequencing. An index or barcode is typically introduced to
enable identification of library origin to allow libraries to be pooled together
for sequencing.
exact_mappings:
- NIMP:PD-AJJUCC35
slot_uri: bican:f717e254-3630-4342-be7b-4d56376e7afe
domain_of:
- Donor
- BrainSlab
- TissueSample
- DissociatedCellSample
- EnrichedCellSample
- BarcodedCellSample
- AmplifiedCdna
- Library
- LibraryAliquot
- LibraryPool
- DissectionRoiPolygon
- entity
- named thing
- organism taxon
- information content entity
- dataset
- physical entity
- activity
- procedure
- material sample
- biological entity
- macromolecular machine mixin
- gene or gene product
- gene
- genome
category:
name: category
domain_of:
- attribute
- entity
- named thing
- organism taxon
- information content entity
- dataset
- physical entity
- activity
- procedure
- material sample
- biological entity
- gene
- genome
pattern: ^bican:[A-Z][A-Za-z]+$
attributes:
average_size_bp:
name: average_size_bp
local_names:
NIMP:
local_name_source: NIMP
local_name_value: library_avg_size_bp
description: Average size of the library in terms of base pairs. This is used
to calculate the molarity before pooling and sequencing.
in_subset:
- analysis
from_schema: https://identifiers.org/brain-bican/library-generation-schema
exact_mappings:
- NIMP:PD-VJVJLC46
rank: 1000
slot_uri: bican:f851eba9-56d1-4472-9d0c-d7f8bc33000a
alias: library avg size bp
domain_of:
- Library
range: integer
concentration_nm:
name: concentration_nm
local_names:
NIMP:
local_name_source: NIMP
local_name_value: library_concentration_nm
description: Concentration of library in terms of nM (nMol/L). Number of molecules
is needed for accurate pooling of the libraries and for generating the number
of target reads/cell in sequencing.
from_schema: https://identifiers.org/brain-bican/library-generation-schema
exact_mappings:
- NIMP:PD-DCDCLD43
rank: 1000
slot_uri: bican:90805b3f-f380-4f23-b159-e7eaa0c8f052
alias: library concentration nm
domain_of:
- Library
range: float
pass_fail_result:
name: pass_fail_result
local_names:
NIMP:
local_name_source: NIMP
local_name_value: library_prep_pass_fail
description: Pass or Fail result based on qualitative assessment of library yield
and size.
in_subset:
- analysis
from_schema: https://identifiers.org/brain-bican/library-generation-schema
exact_mappings:
- NIMP:PD-QHQHQB42
slot_uri: bican:6817ede2-7ead-402d-9dbc-131aca627c6c
alias: library prep pass-fail
domain_of:
- AmplifiedCdna
- Library
range: library_prep_pass_fail
quantity_fmol:
name: quantity_fmol
local_names:
NIMP:
local_name_source: NIMP
local_name_value: library_quantification_fmol
description: Amount of library generated in terms of femtomoles
in_subset:
- analysis
from_schema: https://identifiers.org/brain-bican/library-generation-schema
exact_mappings:
- NIMP:PD-JYJYDK42
rank: 1000
slot_uri: bican:4c09ada7-c116-48bc-8fb1-0dcf5c4b939a
alias: library quantification fmol
domain_of:
- Library
range: float
quantity_ng:
name: quantity_ng
local_names:
NIMP:
local_name_source: NIMP
local_name_value: library_quantification_ng
description: Amount of library generated in terms of nanograms
from_schema: https://identifiers.org/brain-bican/library-generation-schema
exact_mappings:
- NIMP:PD-TNTNXP37
slot_uri: bican:318b2d3a-dae7-4c63-bfbb-93862b92f63e
alias: library quantification ng
domain_of:
- AmplifiedCdna
- Library
range: float
r1_r2_index:
name: r1_r2_index
local_names:
NIMP:
local_name_source: NIMP
local_name_value: library_r1_r2_index
description: Name of the pair of library indexes used for sequencing. Indexes
allow libraries to be pooled together for sequencing. Sequencing output (fastq)
are demultiplexed by using the indexes for each library. The name will be associated
with the sequences of i7, i5, and i5as, which are needed by SeqCores for demultiplexing. The
required direction of the sequence (sense or antisense) of the index can differ
depending on sequencing instruments.
in_subset:
- analysis
- tracking
from_schema: https://identifiers.org/brain-bican/library-generation-schema
exact_mappings:
- NIMP:PD-VLLMWZ60
rank: 1000
slot_uri: bican:c94b5d8a-e92d-47af-8c0e-ea3b58be4d06
alias: R1/R2 index name
domain_of:
- Library
range: library_r1_r2_index
Induced
name: Library
description: A collection of fragmented and barcode-indexed DNA molecules for sequencing.
An index or barcode is typically introduced to enable identification of library
origin to allow libraries to be pooled together for sequencing.
in_subset:
- bican
- library_generation
from_schema: https://identifiers.org/brain-bican/library-generation-schema
exact_mappings:
- NIMP:Library
is_a: material sample
mixins:
- ProvEntity
slot_usage:
was_generated_by:
name: was_generated_by
description: The library construction process from which the library was generated
by.
domain_of:
- TissueSample
- DissociatedCellSample
- EnrichedCellSample
- BarcodedCellSample
- AmplifiedCdna
- Library
- LibraryPool
- DissectionRoiPolygon
- ProvEntity
range: LibraryConstruction
was_derived_from:
name: was_derived_from
description: The input barcoded cell sample or amplified cDNA from which the library
was derived from.
exact_mappings:
- NIMP:has_parent
domain_of:
- BrainSlab
- TissueSample
- DissociatedCellSample
- EnrichedCellSample
- BarcodedCellSample
- AmplifiedCdna
- Library
- LibraryAliquot
- LibraryPool
- DigitalAsset
- ProvEntity
any_of:
- range: BarcodedCellSample
- range: AmplifiedCdna
name:
name: name
local_names:
NIMP:
local_name_source: NIMP
local_name_value: library_local_name
description: Name of a library, which is a collection of fragmented and barcode-indexed
DNA molecules for sequencing. An index or barcode is typically introduced to
enable identification of library origin to allow libraries to be pooled together
for sequencing.
exact_mappings:
- NIMP:PD-AJJUCC35
slot_uri: bican:f717e254-3630-4342-be7b-4d56376e7afe
domain_of:
- Donor
- BrainSlab
- TissueSample
- DissociatedCellSample
- EnrichedCellSample
- BarcodedCellSample
- AmplifiedCdna
- Library
- LibraryAliquot
- LibraryPool
- DissectionRoiPolygon
- entity
- named thing
- organism taxon
- information content entity
- dataset
- physical entity
- activity
- procedure
- material sample
- biological entity
- macromolecular machine mixin
- gene or gene product
- gene
- genome
category:
name: category
domain_of:
- attribute
- entity
- named thing
- organism taxon
- information content entity
- dataset
- physical entity
- activity
- procedure
- material sample
- biological entity
- gene
- genome
pattern: ^bican:[A-Z][A-Za-z]+$
attributes:
average_size_bp:
name: average_size_bp
local_names:
NIMP:
local_name_source: NIMP
local_name_value: library_avg_size_bp
description: Average size of the library in terms of base pairs. This is used
to calculate the molarity before pooling and sequencing.
in_subset:
- analysis
from_schema: https://identifiers.org/brain-bican/library-generation-schema
exact_mappings:
- NIMP:PD-VJVJLC46
rank: 1000
slot_uri: bican:f851eba9-56d1-4472-9d0c-d7f8bc33000a
alias: library avg size bp
owner: Library
domain_of:
- Library
range: integer
concentration_nm:
name: concentration_nm
local_names:
NIMP:
local_name_source: NIMP
local_name_value: library_concentration_nm
description: Concentration of library in terms of nM (nMol/L). Number of molecules
is needed for accurate pooling of the libraries and for generating the number
of target reads/cell in sequencing.
from_schema: https://identifiers.org/brain-bican/library-generation-schema
exact_mappings:
- NIMP:PD-DCDCLD43
rank: 1000
slot_uri: bican:90805b3f-f380-4f23-b159-e7eaa0c8f052
alias: library concentration nm
owner: Library
domain_of:
- Library
range: float
pass_fail_result:
name: pass_fail_result
local_names:
NIMP:
local_name_source: NIMP
local_name_value: library_prep_pass_fail
description: Pass or Fail result based on qualitative assessment of library yield
and size.
in_subset:
- analysis
from_schema: https://identifiers.org/brain-bican/library-generation-schema
exact_mappings:
- NIMP:PD-QHQHQB42
slot_uri: bican:6817ede2-7ead-402d-9dbc-131aca627c6c
alias: library prep pass-fail
owner: Library
domain_of:
- AmplifiedCdna
- Library
range: library_prep_pass_fail
quantity_fmol:
name: quantity_fmol
local_names:
NIMP:
local_name_source: NIMP
local_name_value: library_quantification_fmol
description: Amount of library generated in terms of femtomoles
in_subset:
- analysis
from_schema: https://identifiers.org/brain-bican/library-generation-schema
exact_mappings:
- NIMP:PD-JYJYDK42
rank: 1000
slot_uri: bican:4c09ada7-c116-48bc-8fb1-0dcf5c4b939a
alias: library quantification fmol
owner: Library
domain_of:
- Library
range: float
quantity_ng:
name: quantity_ng
local_names:
NIMP:
local_name_source: NIMP
local_name_value: library_quantification_ng
description: Amount of library generated in terms of nanograms
from_schema: https://identifiers.org/brain-bican/library-generation-schema
exact_mappings:
- NIMP:PD-TNTNXP37
slot_uri: bican:318b2d3a-dae7-4c63-bfbb-93862b92f63e
alias: library quantification ng
owner: Library
domain_of:
- AmplifiedCdna
- Library
range: float
r1_r2_index:
name: r1_r2_index
local_names:
NIMP:
local_name_source: NIMP
local_name_value: library_r1_r2_index
description: Name of the pair of library indexes used for sequencing. Indexes
allow libraries to be pooled together for sequencing. Sequencing output (fastq)
are demultiplexed by using the indexes for each library. The name will be associated
with the sequences of i7, i5, and i5as, which are needed by SeqCores for demultiplexing. The
required direction of the sequence (sense or antisense) of the index can differ
depending on sequencing instruments.
in_subset:
- analysis
- tracking
from_schema: https://identifiers.org/brain-bican/library-generation-schema
exact_mappings:
- NIMP:PD-VLLMWZ60
rank: 1000
slot_uri: bican:c94b5d8a-e92d-47af-8c0e-ea3b58be4d06
alias: R1/R2 index name
owner: Library
domain_of:
- Library
range: library_r1_r2_index
was_generated_by:
name: was_generated_by
description: The library construction process from which the library was generated
by.
from_schema: https://identifiers.org/brain-bican/library-generation-schema
rank: 1000
slot_uri: prov:wasGeneratedBy
alias: was_generated_by
owner: Library
domain_of:
- TissueSample
- DissociatedCellSample
- EnrichedCellSample
- BarcodedCellSample
- AmplifiedCdna
- Library
- LibraryPool
- DissectionRoiPolygon
- ProvEntity
range: LibraryConstruction
was_derived_from:
name: was_derived_from
description: The input barcoded cell sample or amplified cDNA from which the library
was derived from.
from_schema: https://identifiers.org/brain-bican/library-generation-schema
exact_mappings:
- NIMP:has_parent
rank: 1000
slot_uri: prov:wasDerivedFrom
alias: was_derived_from
owner: Library
domain_of:
- BrainSlab
- TissueSample
- DissociatedCellSample
- EnrichedCellSample
- BarcodedCellSample
- AmplifiedCdna
- Library
- LibraryAliquot
- LibraryPool
- DigitalAsset
- ProvEntity
range: ProvEntity
any_of:
- range: BarcodedCellSample
- range: AmplifiedCdna
name:
name: name
definition_uri: https://w3id.org/biolink/vocab/name
local_names:
NIMP:
local_name_source: NIMP
local_name_value: library_local_name
description: Name of a library, which is a collection of fragmented and barcode-indexed
DNA molecules for sequencing. An index or barcode is typically introduced to
enable identification of library origin to allow libraries to be pooled together
for sequencing.
from_schema: https://identifiers.org/brain-bican/library-generation-schema
exact_mappings:
- NIMP:PD-AJJUCC35
rank: 1000
domain: entity
slot_uri: bican:f717e254-3630-4342-be7b-4d56376e7afe
alias: name
owner: Library
domain_of:
- Donor
- BrainSlab
- TissueSample
- DissociatedCellSample
- EnrichedCellSample
- BarcodedCellSample
- AmplifiedCdna
- Library
- LibraryAliquot
- LibraryPool
- DissectionRoiPolygon
- entity
- named thing
- organism taxon
- information content entity
- dataset
- physical entity
- activity
- procedure
- material sample
- biological entity
- macromolecular machine mixin
- gene or gene product
- gene
- genome
range: label type
id:
name: id
definition_uri: https://w3id.org/biolink/vocab/id
description: A unique identifier for an entity. Must be either a CURIE shorthand
for a URI or a complete URI
in_subset:
- translator_minimal
from_schema: https://identifiers.org/brain-bican/library-generation-schema
exact_mappings:
- AGRKB:primaryId
- gff3:ID
- gpi:DB_Object_ID
rank: 1000
domain: entity
slot_uri: biolink:id
identifier: true
alias: id
owner: Library
domain_of:
- ontology class
- entity
- attribute
- named thing
- taxonomic rank
- organism taxon
- information content entity
- dataset
- physical entity
- activity
- procedure
- material sample
- biological entity
- gene
- genome
range: string
required: true
iri:
name: iri
definition_uri: https://w3id.org/biolink/vocab/iri
description: An IRI for an entity. This is determined by the id using expansion
rules.
in_subset:
- translator_minimal
- samples
from_schema: https://identifiers.org/brain-bican/library-generation-schema
exact_mappings:
- WIKIDATA_PROPERTY:P854
rank: 1000
slot_uri: biolink:iri
alias: iri
owner: Library
domain_of:
- attribute
- entity
- named thing
- organism taxon
- information content entity
- dataset
- physical entity
- activity
- procedure
- material sample
- biological entity
- gene
- genome
range: iri type
category:
name: category
definition_uri: https://w3id.org/biolink/vocab/category
description: Name of the high level ontology class in which this entity is categorized.
Corresponds to the label for the biolink entity type class. In a neo4j database
this MAY correspond to the neo4j label tag. In an RDF database it should be
a biolink model class URI. This field is multi-valued. It should include values
for ancestors of the biolink class; for example, a protein such as Shh would
have category values `biolink:Protein`, `biolink:GeneProduct`, `biolink:MolecularEntity`.
In an RDF database, nodes will typically have an rdf:type triples. This can
be to the most specific biolink class, or potentially to a class more specific
than something in biolink. For example, a sequence feature `f` may have a rdf:type
assertion to a SO class such as TF_binding_site, which is more specific than
anything in biolink. Here we would have categories {biolink:GenomicEntity, biolink:MolecularEntity,
biolink:NamedThing}
from_schema: https://identifiers.org/brain-bican/library-generation-schema
rank: 1000
is_a: type
domain: entity
slot_uri: biolink:category
designates_type: true
alias: category
owner: Library
domain_of:
- attribute
- entity
- named thing
- organism taxon
- information content entity
- dataset
- physical entity
- activity
- procedure
- material sample
- biological entity
- gene
- genome
is_class_field: true
range: uriorcurie
multivalued: true
pattern: ^bican:[A-Z][A-Za-z]+$
type:
name: type
definition_uri: https://w3id.org/biolink/vocab/type
from_schema: https://identifiers.org/brain-bican/library-generation-schema
mappings:
- rdf:type
exact_mappings:
- gff3:type
- gpi:DB_Object_Type
rank: 1000
domain: entity
slot_uri: rdf:type
alias: type
owner: Library
domain_of:
- entity
- attribute
- named thing
- organism taxon
- information content entity
- dataset
- physical entity
- activity
- procedure
- material sample
- biological entity
- gene
- genome
range: string
multivalued: true
description:
name: description
definition_uri: https://w3id.org/biolink/vocab/description
description: a human-readable description of an entity
in_subset:
- translator_minimal
from_schema: https://identifiers.org/brain-bican/library-generation-schema
aliases:
- definition
mappings:
- dct:description
exact_mappings:
- IAO:0000115
- skos:definitions
narrow_mappings:
- gff3:Description
rank: 1000
slot_uri: dct:description
alias: description
owner: Library
domain_of:
- entity
- attribute
- named thing
- organism taxon
- information content entity
- dataset
- physical entity
- activity
- procedure
- material sample
- biological entity
- gene
- genome
range: narrative text
has attribute:
name: has attribute
definition_uri: https://w3id.org/biolink/vocab/has_attribute
description: connects any entity to an attribute
in_subset:
- samples
from_schema: https://identifiers.org/brain-bican/library-generation-schema
exact_mappings:
- SIO:000008
close_mappings:
- OBI:0001927
narrow_mappings:
- OBAN:association_has_subject_property
- OBAN:association_has_object_property
- CPT:has_possibly_included_panel_element
- DRUGBANK:category
- EFO:is_executed_in
- HANCESTRO:0301
- LOINC:has_action_guidance
- LOINC:has_adjustment
- LOINC:has_aggregation_view
- LOINC:has_approach_guidance
- LOINC:has_divisor
- LOINC:has_exam
- LOINC:has_method
- LOINC:has_modality_subtype
- LOINC:has_object_guidance
- LOINC:has_scale
- LOINC:has_suffix
- LOINC:has_time_aspect
- LOINC:has_time_modifier
- LOINC:has_timing_of
- NCIT:R88
- NCIT:eo_disease_has_property_or_attribute
- NCIT:has_data_element
- NCIT:has_pharmaceutical_administration_method
- NCIT:has_pharmaceutical_basic_dose_form
- NCIT:has_pharmaceutical_intended_site
- NCIT:has_pharmaceutical_release_characteristics
- NCIT:has_pharmaceutical_state_of_matter
- NCIT:has_pharmaceutical_transformation
- NCIT:is_qualified_by
- NCIT:qualifier_applies_to
- NCIT:role_has_domain
- NCIT:role_has_range
- INO:0000154
- HANCESTRO:0308
- OMIM:has_inheritance_type
- orphanet:C016
- orphanet:C017
- RO:0000053
- RO:0000086
- RO:0000087
- SNOMED:has_access
- SNOMED:has_clinical_course
- SNOMED:has_count_of_base_of_active_ingredient
- SNOMED:has_dose_form_administration_method
- SNOMED:has_dose_form_release_characteristic
- SNOMED:has_dose_form_transformation
- SNOMED:has_finding_context
- SNOMED:has_finding_informer
- SNOMED:has_inherent_attribute
- SNOMED:has_intent
- SNOMED:has_interpretation
- SNOMED:has_laterality
- SNOMED:has_measurement_method
- SNOMED:has_method
- SNOMED:has_priority
- SNOMED:has_procedure_context
- SNOMED:has_process_duration
- SNOMED:has_property
- SNOMED:has_revision_status
- SNOMED:has_scale_type
- SNOMED:has_severity
- SNOMED:has_specimen
- SNOMED:has_state_of_matter
- SNOMED:has_subject_relationship_context
- SNOMED:has_surgical_approach
- SNOMED:has_technique
- SNOMED:has_temporal_context
- SNOMED:has_time_aspect
- SNOMED:has_units
- UMLS:has_structural_class
- UMLS:has_supported_concept_property
- UMLS:has_supported_concept_relationship
- UMLS:may_be_qualified_by
rank: 1000
domain: entity
slot_uri: biolink:has_attribute
alias: has_attribute
owner: Library
domain_of:
- entity
- attribute
- named thing
- organism taxon
- information content entity
- dataset
- physical entity
- activity
- procedure
- material sample
- biological entity
- gene
- genome
range: attribute
multivalued: true
deprecated:
name: deprecated
definition_uri: https://w3id.org/biolink/vocab/deprecated
description: A boolean flag indicating that an entity is no longer considered
current or valid.
from_schema: https://identifiers.org/brain-bican/library-generation-schema
exact_mappings:
- oboInOwl:ObsoleteClass
rank: 1000
slot_uri: biolink:deprecated
alias: deprecated
owner: Library
domain_of:
- entity
- attribute
- named thing
- organism taxon
- information content entity
- dataset
- physical entity
- activity
- procedure
- material sample
- biological entity
- gene
- genome
range: boolean
provided by:
name: provided by
definition_uri: https://w3id.org/biolink/vocab/provided_by
description: The value in this node property represents the knowledge provider
that created or assembled the node and all of its attributes. Used internally
to represent how a particular node made its way into a knowledge provider or
graph.
from_schema: https://identifiers.org/brain-bican/library-generation-schema
rank: 1000
is_a: node property
domain: named thing
slot_uri: biolink:provided_by
alias: provided_by
owner: Library
domain_of:
- named thing
- attribute
- organism taxon
- information content entity
- dataset
- physical entity
- activity
- procedure
- material sample
- biological entity
- gene
- genome
range: string
multivalued: true
xref:
name: xref
definition_uri: https://w3id.org/biolink/vocab/xref
description: A database cross reference or alternative identifier for a NamedThing
or edge between two NamedThings. This property should point to a database record
or webpage that supports the existence of the edge, or gives more detail about
the edge. This property can be used on a node or edge to provide multiple URIs
or CURIE cross references.
in_subset:
- translator_minimal
from_schema: https://identifiers.org/brain-bican/library-generation-schema
aliases:
- dbxref
- Dbxref
- DbXref
- record_url
- source_record_urls
narrow_mappings:
- gff3:Dbxref
- gpi:DB_Xrefs
rank: 1000
domain: named thing
slot_uri: biolink:xref
alias: xref
owner: Library
domain_of:
- named thing
- gene
- attribute
- organism taxon
- information content entity
- dataset
- physical entity
- activity
- procedure
- material sample
- biological entity
- genome
range: uriorcurie
multivalued: true
full name:
name: full name
definition_uri: https://w3id.org/biolink/vocab/full_name
description: a long-form human readable name for a thing
from_schema: https://identifiers.org/brain-bican/library-generation-schema
rank: 1000
is_a: node property
domain: named thing
slot_uri: biolink:full_name
alias: full_name
owner: Library
domain_of:
- named thing
- attribute
- organism taxon
- information content entity
- dataset
- physical entity
- activity
- procedure
- material sample
- biological entity
- gene
- genome
range: label type
synonym:
name: synonym
definition_uri: https://w3id.org/biolink/vocab/synonym
description: Alternate human-readable names for a thing
in_subset:
- translator_minimal
from_schema: https://identifiers.org/brain-bican/library-generation-schema
aliases:
- alias
narrow_mappings:
- skos:altLabel
- gff3:Alias
- AGRKB:synonyms
- gpi:DB_Object_Synonyms
- HANCESTRO:0330
- IAO:0000136
- RXNORM:has_tradename
rank: 1000
is_a: node property
domain: named thing
slot_uri: biolink:synonym
alias: synonym
owner: Library
domain_of:
- named thing
- attribute
- organism taxon
- information content entity
- dataset
- physical entity
- activity
- procedure
- material sample
- biological entity
- gene
- genome
range: label type
multivalued: true