Skip to content

Class: Library

A collection of fragmented and barcode-indexed DNA molecules for sequencing. An index or barcode is typically introduced to enable identification of library origin to allow libraries to be pooled together for sequencing.

URI: bican:Library

classDiagram class Library click Library href "../Library" ProvEntity <|-- Library click ProvEntity href "../ProvEntity" MaterialSample <|-- Library click MaterialSample href "../MaterialSample" Library : average_size_bp Library : category Library : concentration_nm Library : deprecated Library : description Library : full_name Library : has_attribute Library --> "*" Attribute : has_attribute click Attribute href "../Attribute" Library : id Library : iri Library : name Library : pass_fail_result Library --> "0..1" LibraryPrepPassFail : pass_fail_result click LibraryPrepPassFail href "../LibraryPrepPassFail" Library : provided_by Library : quantity_fmol Library : quantity_ng Library : r1_r2_index Library --> "0..1" LibraryR1R2Index : r1_r2_index click LibraryR1R2Index href "../LibraryR1R2Index" Library : synonym Library : type Library : was_derived_from Library --> "0..1" ProvEntity : was_derived_from click ProvEntity href "../ProvEntity" Library : was_generated_by Library --> "0..1" LibraryConstruction : was_generated_by click LibraryConstruction href "../LibraryConstruction" Library : xref

Inheritance

Slots

Name Cardinality and Range Description Inheritance
was_generated_by 0..1
LibraryConstruction		 The library construction process from which the library was generated by direct
was_derived_from 0..1
ProvEntity or 
BarcodedCellSample or 
AmplifiedCdna		 The input barcoded cell sample or amplified cDNA from which the library was d... direct
name 0..1
LabelType		 Name of a library, which is a collection of fragmented and barcode-indexed DN... direct
average_size_bp 0..1
Integer		 Average size of the library in terms of base pairs direct
concentration_nm 0..1
Float		 Concentration of library in terms of nM (nMol/L) direct
pass_fail_result 0..1
LibraryPrepPassFail		 Pass or Fail result based on qualitative assessment of library yield and size direct
quantity_fmol 0..1
Float		 Amount of library generated in terms of femtomoles direct
quantity_ng 0..1
Float		 Amount of library generated in terms of nanograms direct
r1_r2_index 0..1
LibraryR1R2Index		 Name of the pair of library indexes used for sequencing direct
id 1
String		 A unique identifier for an entity PhysicalEntity, NamedThing, Entity, MaterialSample
iri 0..1
IriType		 An IRI for an entity PhysicalEntity, NamedThing, Entity, MaterialSample
category *
Uriorcurie		 Name of the high level ontology class in which this entity is categorized PhysicalEntity, NamedThing, Entity, MaterialSample
type *
String		 PhysicalEntity, NamedThing, Entity, MaterialSample
description 0..1
NarrativeText		 a human-readable description of an entity PhysicalEntity, NamedThing, Entity, MaterialSample
has_attribute *
Attribute		 connects any entity to an attribute PhysicalEntity, NamedThing, Entity, MaterialSample
deprecated 0..1
Boolean		 A boolean flag indicating that an entity is no longer considered current or v... PhysicalEntity, NamedThing, Entity, MaterialSample
provided_by *
String		 The value in this node property represents the knowledge provider that create... PhysicalEntity, NamedThing, MaterialSample
xref *
Uriorcurie		 A database cross reference or alternative identifier for a NamedThing or edge... PhysicalEntity, NamedThing, MaterialSample
full_name 0..1
LabelType		 a long-form human readable name for a thing PhysicalEntity, NamedThing, MaterialSample
synonym *
LabelType		 Alternate human-readable names for a thing PhysicalEntity, NamedThing, MaterialSample

Usages

used by used in type used
LibraryAliquot was_derived_from range Library

Identifier and Mapping Information

Schema Source

  • from schema: https://identifiers.org/brain-bican/library-generation-schema

Mappings

Mapping Type Mapped Value
self bican:Library
native bican:Library
exact NIMP:Library

LinkML Source

Direct

name: Library
description: A collection of fragmented and barcode-indexed DNA molecules for sequencing.
  An index or barcode is typically introduced to enable identification of library
  origin to allow libraries to be pooled together for sequencing.
in_subset:
- bican
- library_generation
from_schema: https://identifiers.org/brain-bican/library-generation-schema
exact_mappings:
- NIMP:Library
is_a: material sample
mixins:
- ProvEntity
slots:
- was_generated_by
- was_derived_from
- name
slot_usage:
  was_generated_by:
    name: was_generated_by
    description: The library construction process from which the library was generated
      by.
    domain_of:
    - TissueSample
    - DissociatedCellSample
    - EnrichedCellSample
    - BarcodedCellSample
    - AmplifiedCdna
    - Library
    - LibraryPool
    - DissectionRoiPolygon
    - ProvEntity
    range: LibraryConstruction
  was_derived_from:
    name: was_derived_from
    description: The input barcoded cell sample or amplified cDNA from which the library
      was derived from.
    exact_mappings:
    - NIMP:has_parent
    domain_of:
    - BrainSlab
    - TissueSample
    - DissociatedCellSample
    - EnrichedCellSample
    - BarcodedCellSample
    - AmplifiedCdna
    - Library
    - LibraryAliquot
    - LibraryPool
    - ProvEntity
    exactly_one_of:
    - range: BarcodedCellSample
    - range: AmplifiedCdna
  name:
    name: name
    description: Name of a library, which is a collection of fragmented and barcode-indexed
      DNA molecules for sequencing.  An index or barcode is typically introduced to
      enable identification of library origin to allow libraries to be pooled together
      for sequencing.
    exact_mappings:
    - NIMP:PD-AJJUCC35
    slot_uri: bican:f717e254-3630-4342-be7b-4d56376e7afe
    domain_of:
    - Donor
    - BrainSlab
    - TissueSample
    - DissociatedCellSample
    - EnrichedCellSample
    - BarcodedCellSample
    - AmplifiedCdna
    - Library
    - LibraryAliquot
    - LibraryPool
    - DissectionRoiPolygon
    - entity
    - named thing
    - organism taxon
    - information content entity
    - dataset
    - physical entity
    - activity
    - procedure
    - material sample
    - biological entity
    - macromolecular machine mixin
    - gene or gene product
    - gene
    - genome
  category:
    name: category
    domain_of:
    - attribute
    - entity
    - named thing
    - organism taxon
    - information content entity
    - dataset
    - physical entity
    - activity
    - procedure
    - material sample
    - biological entity
    - gene
    - genome
    pattern: ^bican:[A-Z][A-Za-z]+$
attributes:
  average_size_bp:
    name: average_size_bp
    local_names:
      NIMP:
        local_name_source: NIMP
        local_name_value: library_avg_size_bp
    description: Average size of the library in terms of base pairs.  This is used
      to calculate the molarity before pooling and sequencing.
    in_subset:
    - analysis
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    exact_mappings:
    - NIMP:PD-VJVJLC46
    rank: 1000
    slot_uri: bican:f851eba9-56d1-4472-9d0c-d7f8bc33000a
    alias: library avg size bp
    domain_of:
    - Library
    range: integer
  concentration_nm:
    name: concentration_nm
    local_names:
      NIMP:
        local_name_source: NIMP
        local_name_value: library_concentration_nm
    description: Concentration of library in terms of nM (nMol/L).  Number of molecules
      is needed for accurate pooling of the libraries and for generating the number
      of target reads/cell in sequencing.
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    exact_mappings:
    - NIMP:PD-DCDCLD43
    rank: 1000
    slot_uri: bican:90805b3f-f380-4f23-b159-e7eaa0c8f052
    alias: library concentration nm
    domain_of:
    - Library
    range: float
  pass_fail_result:
    name: pass_fail_result
    local_names:
      NIMP:
        local_name_source: NIMP
        local_name_value: library_prep_pass_fail
    description: Pass or Fail result based on qualitative assessment of library yield
      and size.
    in_subset:
    - analysis
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    exact_mappings:
    - NIMP:PD-QHQHQB42
    slot_uri: bican:6817ede2-7ead-402d-9dbc-131aca627c6c
    alias: library prep pass-fail
    domain_of:
    - AmplifiedCdna
    - Library
    range: library_prep_pass_fail
  quantity_fmol:
    name: quantity_fmol
    local_names:
      NIMP:
        local_name_source: NIMP
        local_name_value: library_quantification_fmol
    description: Amount of library generated in terms of femtomoles
    in_subset:
    - analysis
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    exact_mappings:
    - NIMP:PD-JYJYDK42
    rank: 1000
    slot_uri: bican:4c09ada7-c116-48bc-8fb1-0dcf5c4b939a
    alias: library quantification fmol
    domain_of:
    - Library
    range: float
  quantity_ng:
    name: quantity_ng
    local_names:
      NIMP:
        local_name_source: NIMP
        local_name_value: library_quantification_ng
    description: Amount of library generated in terms of nanograms
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    exact_mappings:
    - NIMP:PD-TNTNXP37
    slot_uri: bican:318b2d3a-dae7-4c63-bfbb-93862b92f63e
    alias: library quantification ng
    domain_of:
    - AmplifiedCdna
    - Library
    range: float
  r1_r2_index:
    name: r1_r2_index
    local_names:
      NIMP:
        local_name_source: NIMP
        local_name_value: library_r1_r2_index
    description: Name of the pair of library indexes used for sequencing.  Indexes
      allow libraries to be pooled together for sequencing.  Sequencing output (fastq)
      are demultiplexed by using the indexes for each library.  The name will be associated
      with the sequences of i7, i5, and i5as, which are needed by SeqCores for demultiplexing.  The
      required direction of the sequence (sense or antisense) of the index can differ
      depending on sequencing instruments.
    in_subset:
    - analysis
    - tracking
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    exact_mappings:
    - NIMP:PD-VLLMWZ60
    rank: 1000
    slot_uri: bican:c94b5d8a-e92d-47af-8c0e-ea3b58be4d06
    alias: R1/R2 index name
    domain_of:
    - Library
    range: library_r1_r2_index

Induced

name: Library
description: A collection of fragmented and barcode-indexed DNA molecules for sequencing.
  An index or barcode is typically introduced to enable identification of library
  origin to allow libraries to be pooled together for sequencing.
in_subset:
- bican
- library_generation
from_schema: https://identifiers.org/brain-bican/library-generation-schema
exact_mappings:
- NIMP:Library
is_a: material sample
mixins:
- ProvEntity
slot_usage:
  was_generated_by:
    name: was_generated_by
    description: The library construction process from which the library was generated
      by.
    domain_of:
    - TissueSample
    - DissociatedCellSample
    - EnrichedCellSample
    - BarcodedCellSample
    - AmplifiedCdna
    - Library
    - LibraryPool
    - DissectionRoiPolygon
    - ProvEntity
    range: LibraryConstruction
  was_derived_from:
    name: was_derived_from
    description: The input barcoded cell sample or amplified cDNA from which the library
      was derived from.
    exact_mappings:
    - NIMP:has_parent
    domain_of:
    - BrainSlab
    - TissueSample
    - DissociatedCellSample
    - EnrichedCellSample
    - BarcodedCellSample
    - AmplifiedCdna
    - Library
    - LibraryAliquot
    - LibraryPool
    - ProvEntity
    exactly_one_of:
    - range: BarcodedCellSample
    - range: AmplifiedCdna
  name:
    name: name
    description: Name of a library, which is a collection of fragmented and barcode-indexed
      DNA molecules for sequencing.  An index or barcode is typically introduced to
      enable identification of library origin to allow libraries to be pooled together
      for sequencing.
    exact_mappings:
    - NIMP:PD-AJJUCC35
    slot_uri: bican:f717e254-3630-4342-be7b-4d56376e7afe
    domain_of:
    - Donor
    - BrainSlab
    - TissueSample
    - DissociatedCellSample
    - EnrichedCellSample
    - BarcodedCellSample
    - AmplifiedCdna
    - Library
    - LibraryAliquot
    - LibraryPool
    - DissectionRoiPolygon
    - entity
    - named thing
    - organism taxon
    - information content entity
    - dataset
    - physical entity
    - activity
    - procedure
    - material sample
    - biological entity
    - macromolecular machine mixin
    - gene or gene product
    - gene
    - genome
  category:
    name: category
    domain_of:
    - attribute
    - entity
    - named thing
    - organism taxon
    - information content entity
    - dataset
    - physical entity
    - activity
    - procedure
    - material sample
    - biological entity
    - gene
    - genome
    pattern: ^bican:[A-Z][A-Za-z]+$
attributes:
  average_size_bp:
    name: average_size_bp
    local_names:
      NIMP:
        local_name_source: NIMP
        local_name_value: library_avg_size_bp
    description: Average size of the library in terms of base pairs.  This is used
      to calculate the molarity before pooling and sequencing.
    in_subset:
    - analysis
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    exact_mappings:
    - NIMP:PD-VJVJLC46
    rank: 1000
    slot_uri: bican:f851eba9-56d1-4472-9d0c-d7f8bc33000a
    alias: library avg size bp
    owner: Library
    domain_of:
    - Library
    range: integer
  concentration_nm:
    name: concentration_nm
    local_names:
      NIMP:
        local_name_source: NIMP
        local_name_value: library_concentration_nm
    description: Concentration of library in terms of nM (nMol/L).  Number of molecules
      is needed for accurate pooling of the libraries and for generating the number
      of target reads/cell in sequencing.
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    exact_mappings:
    - NIMP:PD-DCDCLD43
    rank: 1000
    slot_uri: bican:90805b3f-f380-4f23-b159-e7eaa0c8f052
    alias: library concentration nm
    owner: Library
    domain_of:
    - Library
    range: float
  pass_fail_result:
    name: pass_fail_result
    local_names:
      NIMP:
        local_name_source: NIMP
        local_name_value: library_prep_pass_fail
    description: Pass or Fail result based on qualitative assessment of library yield
      and size.
    in_subset:
    - analysis
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    exact_mappings:
    - NIMP:PD-QHQHQB42
    slot_uri: bican:6817ede2-7ead-402d-9dbc-131aca627c6c
    alias: library prep pass-fail
    owner: Library
    domain_of:
    - AmplifiedCdna
    - Library
    range: library_prep_pass_fail
  quantity_fmol:
    name: quantity_fmol
    local_names:
      NIMP:
        local_name_source: NIMP
        local_name_value: library_quantification_fmol
    description: Amount of library generated in terms of femtomoles
    in_subset:
    - analysis
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    exact_mappings:
    - NIMP:PD-JYJYDK42
    rank: 1000
    slot_uri: bican:4c09ada7-c116-48bc-8fb1-0dcf5c4b939a
    alias: library quantification fmol
    owner: Library
    domain_of:
    - Library
    range: float
  quantity_ng:
    name: quantity_ng
    local_names:
      NIMP:
        local_name_source: NIMP
        local_name_value: library_quantification_ng
    description: Amount of library generated in terms of nanograms
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    exact_mappings:
    - NIMP:PD-TNTNXP37
    slot_uri: bican:318b2d3a-dae7-4c63-bfbb-93862b92f63e
    alias: library quantification ng
    owner: Library
    domain_of:
    - AmplifiedCdna
    - Library
    range: float
  r1_r2_index:
    name: r1_r2_index
    local_names:
      NIMP:
        local_name_source: NIMP
        local_name_value: library_r1_r2_index
    description: Name of the pair of library indexes used for sequencing.  Indexes
      allow libraries to be pooled together for sequencing.  Sequencing output (fastq)
      are demultiplexed by using the indexes for each library.  The name will be associated
      with the sequences of i7, i5, and i5as, which are needed by SeqCores for demultiplexing.  The
      required direction of the sequence (sense or antisense) of the index can differ
      depending on sequencing instruments.
    in_subset:
    - analysis
    - tracking
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    exact_mappings:
    - NIMP:PD-VLLMWZ60
    rank: 1000
    slot_uri: bican:c94b5d8a-e92d-47af-8c0e-ea3b58be4d06
    alias: R1/R2 index name
    owner: Library
    domain_of:
    - Library
    range: library_r1_r2_index
  was_generated_by:
    name: was_generated_by
    description: The library construction process from which the library was generated
      by.
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    rank: 1000
    slot_uri: prov:wasGeneratedBy
    alias: was_generated_by
    owner: Library
    domain_of:
    - TissueSample
    - DissociatedCellSample
    - EnrichedCellSample
    - BarcodedCellSample
    - AmplifiedCdna
    - Library
    - LibraryPool
    - DissectionRoiPolygon
    - ProvEntity
    range: LibraryConstruction
  was_derived_from:
    name: was_derived_from
    description: The input barcoded cell sample or amplified cDNA from which the library
      was derived from.
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    exact_mappings:
    - NIMP:has_parent
    rank: 1000
    slot_uri: prov:wasDerivedFrom
    alias: was_derived_from
    owner: Library
    domain_of:
    - BrainSlab
    - TissueSample
    - DissociatedCellSample
    - EnrichedCellSample
    - BarcodedCellSample
    - AmplifiedCdna
    - Library
    - LibraryAliquot
    - LibraryPool
    - ProvEntity
    range: ProvEntity
    exactly_one_of:
    - range: BarcodedCellSample
    - range: AmplifiedCdna
  name:
    name: name
    definition_uri: https://w3id.org/biolink/vocab/name
    description: Name of a library, which is a collection of fragmented and barcode-indexed
      DNA molecules for sequencing.  An index or barcode is typically introduced to
      enable identification of library origin to allow libraries to be pooled together
      for sequencing.
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    exact_mappings:
    - NIMP:PD-AJJUCC35
    rank: 1000
    domain: entity
    slot_uri: bican:f717e254-3630-4342-be7b-4d56376e7afe
    alias: name
    owner: Library
    domain_of:
    - Donor
    - BrainSlab
    - TissueSample
    - DissociatedCellSample
    - EnrichedCellSample
    - BarcodedCellSample
    - AmplifiedCdna
    - Library
    - LibraryAliquot
    - LibraryPool
    - DissectionRoiPolygon
    - entity
    - named thing
    - organism taxon
    - information content entity
    - dataset
    - physical entity
    - activity
    - procedure
    - material sample
    - biological entity
    - macromolecular machine mixin
    - gene or gene product
    - gene
    - genome
    range: label type
  id:
    name: id
    definition_uri: https://w3id.org/biolink/vocab/id
    description: A unique identifier for an entity. Must be either a CURIE shorthand
      for a URI or a complete URI
    in_subset:
    - translator_minimal
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    exact_mappings:
    - AGRKB:primaryId
    - gff3:ID
    - gpi:DB_Object_ID
    rank: 1000
    domain: entity
    slot_uri: biolink:id
    identifier: true
    alias: id
    owner: Library
    domain_of:
    - ontology class
    - entity
    - attribute
    - named thing
    - taxonomic rank
    - organism taxon
    - information content entity
    - dataset
    - physical entity
    - activity
    - procedure
    - material sample
    - biological entity
    - gene
    - genome
    range: string
    required: true
  iri:
    name: iri
    definition_uri: https://w3id.org/biolink/vocab/iri
    description: An IRI for an entity. This is determined by the id using expansion
      rules.
    in_subset:
    - translator_minimal
    - samples
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    exact_mappings:
    - WIKIDATA_PROPERTY:P854
    rank: 1000
    slot_uri: biolink:iri
    alias: iri
    owner: Library
    domain_of:
    - attribute
    - entity
    - named thing
    - organism taxon
    - information content entity
    - dataset
    - physical entity
    - activity
    - procedure
    - material sample
    - biological entity
    - gene
    - genome
    range: iri type
  category:
    name: category
    definition_uri: https://w3id.org/biolink/vocab/category
    description: Name of the high level ontology class in which this entity is categorized.
      Corresponds to the label for the biolink entity type class. In a neo4j database
      this MAY correspond to the neo4j label tag. In an RDF database it should be
      a biolink model class URI. This field is multi-valued. It should include values
      for ancestors of the biolink class; for example, a protein such as Shh would
      have category values `biolink:Protein`, `biolink:GeneProduct`, `biolink:MolecularEntity`.
      In an RDF database, nodes will typically have an rdf:type triples. This can
      be to the most specific biolink class, or potentially to a class more specific
      than something in biolink. For example, a sequence feature `f` may have a rdf:type
      assertion to a SO class such as TF_binding_site, which is more specific than
      anything in biolink. Here we would have categories {biolink:GenomicEntity, biolink:MolecularEntity,
      biolink:NamedThing}
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    rank: 1000
    is_a: type
    domain: entity
    slot_uri: biolink:category
    multivalued: true
    designates_type: true
    alias: category
    owner: Library
    domain_of:
    - attribute
    - entity
    - named thing
    - organism taxon
    - information content entity
    - dataset
    - physical entity
    - activity
    - procedure
    - material sample
    - biological entity
    - gene
    - genome
    is_class_field: true
    range: uriorcurie
    pattern: ^bican:[A-Z][A-Za-z]+$
  type:
    name: type
    definition_uri: https://w3id.org/biolink/vocab/type
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    mappings:
    - rdf:type
    exact_mappings:
    - gff3:type
    - gpi:DB_Object_Type
    rank: 1000
    domain: entity
    slot_uri: rdf:type
    multivalued: true
    alias: type
    owner: Library
    domain_of:
    - entity
    - attribute
    - named thing
    - organism taxon
    - information content entity
    - dataset
    - physical entity
    - activity
    - procedure
    - material sample
    - biological entity
    - gene
    - genome
    range: string
  description:
    name: description
    definition_uri: https://w3id.org/biolink/vocab/description
    description: a human-readable description of an entity
    in_subset:
    - translator_minimal
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    aliases:
    - definition
    mappings:
    - dct:description
    exact_mappings:
    - IAO:0000115
    - skos:definitions
    narrow_mappings:
    - gff3:Description
    rank: 1000
    slot_uri: dct:description
    alias: description
    owner: Library
    domain_of:
    - entity
    - attribute
    - named thing
    - organism taxon
    - information content entity
    - dataset
    - physical entity
    - activity
    - procedure
    - material sample
    - biological entity
    - gene
    - genome
    range: narrative text
  has attribute:
    name: has attribute
    definition_uri: https://w3id.org/biolink/vocab/has_attribute
    description: connects any entity to an attribute
    in_subset:
    - samples
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    exact_mappings:
    - SIO:000008
    close_mappings:
    - OBI:0001927
    narrow_mappings:
    - OBAN:association_has_subject_property
    - OBAN:association_has_object_property
    - CPT:has_possibly_included_panel_element
    - DRUGBANK:category
    - EFO:is_executed_in
    - HANCESTRO:0301
    - LOINC:has_action_guidance
    - LOINC:has_adjustment
    - LOINC:has_aggregation_view
    - LOINC:has_approach_guidance
    - LOINC:has_divisor
    - LOINC:has_exam
    - LOINC:has_method
    - LOINC:has_modality_subtype
    - LOINC:has_object_guidance
    - LOINC:has_scale
    - LOINC:has_suffix
    - LOINC:has_time_aspect
    - LOINC:has_time_modifier
    - LOINC:has_timing_of
    - NCIT:R88
    - NCIT:eo_disease_has_property_or_attribute
    - NCIT:has_data_element
    - NCIT:has_pharmaceutical_administration_method
    - NCIT:has_pharmaceutical_basic_dose_form
    - NCIT:has_pharmaceutical_intended_site
    - NCIT:has_pharmaceutical_release_characteristics
    - NCIT:has_pharmaceutical_state_of_matter
    - NCIT:has_pharmaceutical_transformation
    - NCIT:is_qualified_by
    - NCIT:qualifier_applies_to
    - NCIT:role_has_domain
    - NCIT:role_has_range
    - INO:0000154
    - HANCESTRO:0308
    - OMIM:has_inheritance_type
    - orphanet:C016
    - orphanet:C017
    - RO:0000053
    - RO:0000086
    - RO:0000087
    - SNOMED:has_access
    - SNOMED:has_clinical_course
    - SNOMED:has_count_of_base_of_active_ingredient
    - SNOMED:has_dose_form_administration_method
    - SNOMED:has_dose_form_release_characteristic
    - SNOMED:has_dose_form_transformation
    - SNOMED:has_finding_context
    - SNOMED:has_finding_informer
    - SNOMED:has_inherent_attribute
    - SNOMED:has_intent
    - SNOMED:has_interpretation
    - SNOMED:has_laterality
    - SNOMED:has_measurement_method
    - SNOMED:has_method
    - SNOMED:has_priority
    - SNOMED:has_procedure_context
    - SNOMED:has_process_duration
    - SNOMED:has_property
    - SNOMED:has_revision_status
    - SNOMED:has_scale_type
    - SNOMED:has_severity
    - SNOMED:has_specimen
    - SNOMED:has_state_of_matter
    - SNOMED:has_subject_relationship_context
    - SNOMED:has_surgical_approach
    - SNOMED:has_technique
    - SNOMED:has_temporal_context
    - SNOMED:has_time_aspect
    - SNOMED:has_units
    - UMLS:has_structural_class
    - UMLS:has_supported_concept_property
    - UMLS:has_supported_concept_relationship
    - UMLS:may_be_qualified_by
    rank: 1000
    domain: entity
    slot_uri: biolink:has_attribute
    multivalued: true
    alias: has_attribute
    owner: Library
    domain_of:
    - entity
    - attribute
    - named thing
    - organism taxon
    - information content entity
    - dataset
    - physical entity
    - activity
    - procedure
    - material sample
    - biological entity
    - gene
    - genome
    range: attribute
  deprecated:
    name: deprecated
    definition_uri: https://w3id.org/biolink/vocab/deprecated
    description: A boolean flag indicating that an entity is no longer considered
      current or valid.
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    exact_mappings:
    - oboInOwl:ObsoleteClass
    rank: 1000
    slot_uri: biolink:deprecated
    alias: deprecated
    owner: Library
    domain_of:
    - entity
    - attribute
    - named thing
    - organism taxon
    - information content entity
    - dataset
    - physical entity
    - activity
    - procedure
    - material sample
    - biological entity
    - gene
    - genome
    range: boolean
  provided by:
    name: provided by
    definition_uri: https://w3id.org/biolink/vocab/provided_by
    description: The value in this node property represents the knowledge provider
      that created or assembled the node and all of its attributes.  Used internally
      to represent how a particular node made its way into a knowledge provider or
      graph.
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    rank: 1000
    is_a: node property
    domain: named thing
    slot_uri: biolink:provided_by
    multivalued: true
    alias: provided_by
    owner: Library
    domain_of:
    - named thing
    - attribute
    - organism taxon
    - information content entity
    - dataset
    - physical entity
    - activity
    - procedure
    - material sample
    - biological entity
    - gene
    - genome
    range: string
  xref:
    name: xref
    definition_uri: https://w3id.org/biolink/vocab/xref
    description: A database cross reference or alternative identifier for a NamedThing
      or edge between two NamedThings.  This property should point to a database record
      or webpage that supports the existence of the edge, or gives more detail about
      the edge. This property can be used on a node or edge to provide multiple URIs
      or CURIE cross references.
    in_subset:
    - translator_minimal
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    aliases:
    - dbxref
    - Dbxref
    - DbXref
    - record_url
    - source_record_urls
    narrow_mappings:
    - gff3:Dbxref
    - gpi:DB_Xrefs
    rank: 1000
    domain: named thing
    slot_uri: biolink:xref
    multivalued: true
    alias: xref
    owner: Library
    domain_of:
    - named thing
    - gene
    - attribute
    - organism taxon
    - information content entity
    - dataset
    - physical entity
    - activity
    - procedure
    - material sample
    - biological entity
    - genome
    range: uriorcurie
  full name:
    name: full name
    definition_uri: https://w3id.org/biolink/vocab/full_name
    description: a long-form human readable name for a thing
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    rank: 1000
    is_a: node property
    domain: named thing
    slot_uri: biolink:full_name
    alias: full_name
    owner: Library
    domain_of:
    - named thing
    - attribute
    - organism taxon
    - information content entity
    - dataset
    - physical entity
    - activity
    - procedure
    - material sample
    - biological entity
    - gene
    - genome
    range: label type
  synonym:
    name: synonym
    definition_uri: https://w3id.org/biolink/vocab/synonym
    description: Alternate human-readable names for a thing
    in_subset:
    - translator_minimal
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    aliases:
    - alias
    narrow_mappings:
    - skos:altLabel
    - gff3:Alias
    - AGRKB:synonyms
    - gpi:DB_Object_Synonyms
    - HANCESTRO:0330
    - IAO:0000136
    - RXNORM:has_tradename
    rank: 1000
    is_a: node property
    domain: named thing
    slot_uri: biolink:synonym
    multivalued: true
    alias: synonym
    owner: Library
    domain_of:
    - named thing
    - attribute
    - organism taxon
    - information content entity
    - dataset
    - physical entity
    - activity
    - procedure
    - material sample
    - biological entity
    - gene
    - genome
    range: label type