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Class: ImageDataset

An image dataset is versioned release of a multidimensional regular grid of measurements and metadata required for a morphological representation of an entity such as an anatomical structure (ref: OBI_0003327, RRID:SCR_006266)

URI: AnS:ImageDataset

classDiagram class ImageDataset click ImageDataset href "../ImageDataset" VersionedNamedThing <|-- ImageDataset click VersionedNamedThing href "../VersionedNamedThing" ImageDataset : category ImageDataset : description ImageDataset : id ImageDataset : name ImageDataset : revision_of ImageDataset --> "0..1" VersionedNamedThing : revision_of click VersionedNamedThing href "../VersionedNamedThing" ImageDataset : unit ImageDataset --> "0..1" DISTANCEUNIT : unit click DISTANCEUNIT href "../DISTANCEUNIT" ImageDataset : version ImageDataset : x_direction ImageDataset --> "0..1" ANATOMICALDIRECTION : x_direction click ANATOMICALDIRECTION href "../ANATOMICALDIRECTION" ImageDataset : x_resolution ImageDataset : x_size ImageDataset : y_direction ImageDataset --> "0..1" ANATOMICALDIRECTION : y_direction click ANATOMICALDIRECTION href "../ANATOMICALDIRECTION" ImageDataset : y_resolution ImageDataset : y_size ImageDataset : z_direction ImageDataset --> "0..1" ANATOMICALDIRECTION : z_direction click ANATOMICALDIRECTION href "../ANATOMICALDIRECTION" ImageDataset : z_resolution ImageDataset : z_size

Inheritance

Slots

Name Cardinality and Range Description Inheritance
x_direction 0..1
ANATOMICALDIRECTION		 A controlled vocabulary attribute defining the x axis direction in terms of a... direct
y_direction 0..1
ANATOMICALDIRECTION		 A controlled vocabulary attribute defining the y axis direction in terms of a... direct
z_direction 0..1
ANATOMICALDIRECTION		 A controlled vocabulary attribute defining the z axis direction in terms of a... direct
x_size 0..1
Integer		 The number of pixels/voxels (size) along the x axis direct
y_size 0..1
Integer		 The number of pixels/voxels (size) along the y axis direct
z_size 0..1
Integer		 The number of pixels/voxels (size) along the y axis direct
x_resolution 0..1
Float		 The resolution (length / pixel) in along the x axis (numerical value part) direct
y_resolution 0..1
Float		 The resolution (length / pixel) in along the y axis (numerical value part) direct
z_resolution 0..1
Float		 The resolution (length / pixel) in along the z axis (numerical value part) direct
unit 0..1
DISTANCEUNIT		 A controlled vocabulary attribute defining the length unit of the x, y, and z... direct
version 1
String		 VersionedNamedThing
revision_of 0..1
VersionedNamedThing or 
ImageDataset or 
String		 VersionedNamedThing
id 1
Uriorcurie		 NamedThing
name 1
String		 NamedThing
description 1
String		 NamedThing
category *
Uriorcurie		 NamedThing

Usages

used by used in type used
ImageDataset revision_of any_of[range] ImageDataset
AnatomicalSpace measures any_of[range] ImageDataset

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/my-org/anatomical-structure-schema

Mappings

Mapping Type Mapped Value
self AnS:ImageDataset
native AnS:ImageDataset

LinkML Source

Direct

name: ImageDataset
description: 'An image dataset is versioned release of a multidimensional regular
  grid of measurements  and metadata required for a morphological representation of
  an entity such as an anatomical  structure (ref: OBI_0003327, RRID:SCR_006266)'
from_schema: https://w3id.org/my-org/anatomical-structure-schema
is_a: VersionedNamedThing
slot_usage:
  revision_of:
    name: revision_of
    domain_of:
    - VersionedNamedThing
    any_of:
    - range: ImageDataset
    - range: string
attributes:
  x_direction:
    name: x_direction
    description: A controlled vocabulary attribute defining the x axis direction in
      terms of anatomical  direction.
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    domain_of:
    - ImageDataset
    range: ANATOMICAL_DIRECTION
  y_direction:
    name: y_direction
    description: A controlled vocabulary attribute defining the y axis direction in
      terms of anatomical  direction.
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    domain_of:
    - ImageDataset
    range: ANATOMICAL_DIRECTION
  z_direction:
    name: z_direction
    description: A controlled vocabulary attribute defining the z axis direction in
      terms of anatomical  direction.
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    domain_of:
    - ImageDataset
    range: ANATOMICAL_DIRECTION
  x_size:
    name: x_size
    description: The number of pixels/voxels (size) along the x axis.
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    domain_of:
    - ImageDataset
    range: integer
    minimum_value: 1
  y_size:
    name: y_size
    description: The number of pixels/voxels (size) along the y axis.
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    domain_of:
    - ImageDataset
    range: integer
    minimum_value: 1
  z_size:
    name: z_size
    description: The number of pixels/voxels (size) along the y axis.
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    domain_of:
    - ImageDataset
    range: integer
    minimum_value: 1
  x_resolution:
    name: x_resolution
    description: The resolution (length / pixel) in along the x axis (numerical value
      part).
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    domain_of:
    - ImageDataset
    range: float
    structured_pattern:
      syntax: '{PositiveFloat}'
  y_resolution:
    name: y_resolution
    description: The resolution (length / pixel) in along the y axis (numerical value
      part).
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    domain_of:
    - ImageDataset
    range: float
    structured_pattern:
      syntax: '{PositiveFloat}'
  z_resolution:
    name: z_resolution
    description: The resolution (length / pixel) in along the z axis (numerical value
      part).
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    domain_of:
    - ImageDataset
    range: float
    structured_pattern:
      syntax: '{PositiveFloat}'
  unit:
    name: unit
    description: A controlled vocabulary attribute defining the length unit of the
      x, y, and z  resolution values.
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    domain_of:
    - ImageDataset
    range: DISTANCE_UNIT

Induced

name: ImageDataset
description: 'An image dataset is versioned release of a multidimensional regular
  grid of measurements  and metadata required for a morphological representation of
  an entity such as an anatomical  structure (ref: OBI_0003327, RRID:SCR_006266)'
from_schema: https://w3id.org/my-org/anatomical-structure-schema
is_a: VersionedNamedThing
slot_usage:
  revision_of:
    name: revision_of
    domain_of:
    - VersionedNamedThing
    any_of:
    - range: ImageDataset
    - range: string
attributes:
  x_direction:
    name: x_direction
    description: A controlled vocabulary attribute defining the x axis direction in
      terms of anatomical  direction.
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    alias: x_direction
    owner: ImageDataset
    domain_of:
    - ImageDataset
    range: ANATOMICAL_DIRECTION
  y_direction:
    name: y_direction
    description: A controlled vocabulary attribute defining the y axis direction in
      terms of anatomical  direction.
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    alias: y_direction
    owner: ImageDataset
    domain_of:
    - ImageDataset
    range: ANATOMICAL_DIRECTION
  z_direction:
    name: z_direction
    description: A controlled vocabulary attribute defining the z axis direction in
      terms of anatomical  direction.
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    alias: z_direction
    owner: ImageDataset
    domain_of:
    - ImageDataset
    range: ANATOMICAL_DIRECTION
  x_size:
    name: x_size
    description: The number of pixels/voxels (size) along the x axis.
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    alias: x_size
    owner: ImageDataset
    domain_of:
    - ImageDataset
    range: integer
    minimum_value: 1
  y_size:
    name: y_size
    description: The number of pixels/voxels (size) along the y axis.
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    alias: y_size
    owner: ImageDataset
    domain_of:
    - ImageDataset
    range: integer
    minimum_value: 1
  z_size:
    name: z_size
    description: The number of pixels/voxels (size) along the y axis.
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    alias: z_size
    owner: ImageDataset
    domain_of:
    - ImageDataset
    range: integer
    minimum_value: 1
  x_resolution:
    name: x_resolution
    description: The resolution (length / pixel) in along the x axis (numerical value
      part).
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    alias: x_resolution
    owner: ImageDataset
    domain_of:
    - ImageDataset
    range: float
    structured_pattern:
      syntax: '{PositiveFloat}'
  y_resolution:
    name: y_resolution
    description: The resolution (length / pixel) in along the y axis (numerical value
      part).
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    alias: y_resolution
    owner: ImageDataset
    domain_of:
    - ImageDataset
    range: float
    structured_pattern:
      syntax: '{PositiveFloat}'
  z_resolution:
    name: z_resolution
    description: The resolution (length / pixel) in along the z axis (numerical value
      part).
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    alias: z_resolution
    owner: ImageDataset
    domain_of:
    - ImageDataset
    range: float
    structured_pattern:
      syntax: '{PositiveFloat}'
  unit:
    name: unit
    description: A controlled vocabulary attribute defining the length unit of the
      x, y, and z  resolution values.
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    alias: unit
    owner: ImageDataset
    domain_of:
    - ImageDataset
    range: DISTANCE_UNIT
  version:
    name: version
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    alias: version
    owner: ImageDataset
    domain_of:
    - VersionedNamedThing
    range: string
    required: true
  revision_of:
    name: revision_of
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    alias: revision_of
    owner: ImageDataset
    domain_of:
    - VersionedNamedThing
    range: VersionedNamedThing
    any_of:
    - range: ImageDataset
    - range: string
  id:
    name: id
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    identifier: true
    alias: id
    owner: ImageDataset
    domain_of:
    - NamedThing
    range: uriorcurie
    required: true
  name:
    name: name
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    alias: name
    owner: ImageDataset
    domain_of:
    - NamedThing
    range: string
    required: true
  description:
    name: description
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    alias: description
    owner: ImageDataset
    domain_of:
    - NamedThing
    range: string
    required: true
  category:
    name: category
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    designates_type: true
    alias: category
    owner: ImageDataset
    domain_of:
    - NamedThing
    is_class_field: true
    range: uriorcurie
    multivalued: true