Class: GeneOrGeneProduct

A union of gene loci or gene products. Frequently an identifier for one will be used as proxy for another

classDiagram class GeneOrGeneProduct click GeneOrGeneProduct href "../GeneOrGeneProduct" MacromolecularMachineMixin <|-- GeneOrGeneProduct click MacromolecularMachineMixin href "../MacromolecularMachineMixin" GeneOrGeneProduct <|-- Gene click Gene href "../Gene" GeneOrGeneProduct : macromolecular_machine_mixin_name GeneOrGeneProduct : name

Inheritance

MacromolecularMachineMixin
- GeneOrGeneProduct

Slots

Name	Cardinality and Range	Description	Inheritance
macromolecular_machine_mixin_name	0..1 SymbolType	genes are typically designated by a short symbol and a full name	direct
name	0..1 SymbolType	genes are typically designated by a short symbol and a full name	MacromolecularMachineMixin

Mixin Usage

mixed into	description
Gene	A region (or regions) that includes all of the sequence elements necessary to...

Identifier and Mapping Information

Valid ID Prefixes

Instances of this class should have identifiers with one of the following prefixes:

CHEMBL.TARGET
IUPHAR.FAMILY

Schema Source

from schema: https://w3id.org/brain-bican/bke-taxonomy

Mappings

Mapping Type	Mapped Value
self	biolink:GeneOrGeneProduct
native	bican:GeneOrGeneProduct

LinkML Source

Direct

name: gene or gene product
id_prefixes:
- CHEMBL.TARGET
- IUPHAR.FAMILY
definition_uri: https://w3id.org/biolink/vocab/GeneOrGeneProduct
description: A union of gene loci or gene products. Frequently an identifier for one
  will be used as proxy for another
from_schema: https://w3id.org/brain-bican/bke-taxonomy
is_a: macromolecular machine mixin
mixin: true
slots:
- macromolecular machine mixin_name
class_uri: biolink:GeneOrGeneProduct

Induced

name: gene or gene product
id_prefixes:
- CHEMBL.TARGET
- IUPHAR.FAMILY
definition_uri: https://w3id.org/biolink/vocab/GeneOrGeneProduct
description: A union of gene loci or gene products. Frequently an identifier for one
  will be used as proxy for another
from_schema: https://w3id.org/brain-bican/bke-taxonomy
is_a: macromolecular machine mixin
mixin: true
attributes:
  macromolecular machine mixin_name:
    name: macromolecular machine mixin_name
    definition_uri: https://w3id.org/biolink/vocab/name
    description: genes are typically designated by a short symbol and a full name.
      We map the symbol to the default display name and use an additional slot for
      full name
    in_subset:
    - translator_minimal
    - samples
    from_schema: https://w3id.org/brain-bican/bke-taxonomy
    aliases:
    - label
    - display name
    - title
    mappings:
    - rdfs:label
    exact_mappings:
    - gff3:Name
    - gpi:DB_Object_Name
    narrow_mappings:
    - dct:title
    - WIKIDATA_PROPERTY:P1476
    rank: 1000
    is_a: name
    domain: macromolecular machine mixin
    slot_uri: rdfs:label
    alias: name
    owner: gene or gene product
    domain_of:
    - macromolecular machine mixin
    - gene or gene product
    is_usage_slot: true
    usage_slot_name: name
    range: symbol type
  name:
    name: name
    definition_uri: https://w3id.org/biolink/vocab/name
    description: genes are typically designated by a short symbol and a full name.
      We map the symbol to the default display name and use an additional slot for
      full name
    in_subset:
    - translator_minimal
    - samples
    from_schema: https://w3id.org/brain-bican/bke-taxonomy
    aliases:
    - label
    - display name
    - title
    mappings:
    - rdfs:label
    exact_mappings:
    - gff3:Name
    - gpi:DB_Object_Name
    narrow_mappings:
    - dct:title
    - WIKIDATA_PROPERTY:P1476
    rank: 1000
    domain: entity
    slot_uri: rdfs:label
    alias: name
    owner: gene or gene product
    domain_of:
    - attribute
    - entity
    - macromolecular machine mixin
    - CellTypeTaxonomy
    - CellTypeSet
    - CellTypeTaxon
    - ClusterSet
    - Cluster
    - ColorPalette
    - named thing
    - organism taxon
    - study result
    - relative frequency analysis result
    - information content entity
    - dataset
    - physical entity
    - activity
    - procedure
    - material sample
    - biological entity
    - gene
    - genome
    range: symbol type
class_uri: biolink:GeneOrGeneProduct