Class: Entity
Root Biolink Model class for all things and informational relationships, real or imagined.
* __NOTE__: this is an abstract class and should not be instantiated directly
URI: [biolink:Entity](https://w3id.org/biolink/vocab/Entity)
[String](String.md) | A unique identifier for an entity | direct | | [iri](iri.md) | 0..1
[IriType](IriType.md) | An IRI for an entity | direct | | [category](category.md) | *
[Uriorcurie](Uriorcurie.md) | Name of the high level ontology class in which this entity is categorized | direct | | [type](type.md) | *
[String](String.md) | | direct | | [name](name.md) | 0..1
[LabelType](LabelType.md) | A human-readable name for an attribute or entity | direct | | [description](description.md) | 0..1
[NarrativeText](NarrativeText.md) | a human-readable description of an entity | direct | | [has_attribute](has_attribute.md) | *
[Attribute](Attribute.md) | connects any entity to an attribute | direct | | [deprecated](deprecated.md) | 0..1
[Boolean](Boolean.md) | A boolean flag indicating that an entity is no longer considered current or v... | direct | ## Usages | used by | used in | type | used | | --- | --- | --- | --- | | [CellTypeTaxonomyCreationProcess](CellTypeTaxonomyCreationProcess.md) | [id](id.md) | domain | [Entity](Entity.md) | | [CellTypeTaxonomyCreationProcess](CellTypeTaxonomyCreationProcess.md) | [type](type.md) | domain | [Entity](Entity.md) | | [CellTypeTaxonomyCreationProcess](CellTypeTaxonomyCreationProcess.md) | [name](name.md) | domain | [Entity](Entity.md) | | [CellTypeTaxonomyCreationProcess](CellTypeTaxonomyCreationProcess.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [CellTypeTaxonomyCreationProcess](CellTypeTaxonomyCreationProcess.md) | [category](category.md) | domain | [Entity](Entity.md) | | [CellTypeTaxonomy](CellTypeTaxonomy.md) | [id](id.md) | domain | [Entity](Entity.md) | | [CellTypeTaxonomy](CellTypeTaxonomy.md) | [name](name.md) | domain | [Entity](Entity.md) | | [CellTypeTaxonomy](CellTypeTaxonomy.md) | [type](type.md) | domain | [Entity](Entity.md) | | [CellTypeTaxonomy](CellTypeTaxonomy.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [CellTypeTaxonomy](CellTypeTaxonomy.md) | [category](category.md) | domain | [Entity](Entity.md) | | [CellTypeSet](CellTypeSet.md) | [id](id.md) | domain | [Entity](Entity.md) | | [CellTypeSet](CellTypeSet.md) | [name](name.md) | domain | [Entity](Entity.md) | | [CellTypeSet](CellTypeSet.md) | [type](type.md) | domain | [Entity](Entity.md) | | [CellTypeSet](CellTypeSet.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [CellTypeSet](CellTypeSet.md) | [category](category.md) | domain | [Entity](Entity.md) | | [CellTypeTaxon](CellTypeTaxon.md) | [id](id.md) | domain | [Entity](Entity.md) | | [CellTypeTaxon](CellTypeTaxon.md) | [name](name.md) | domain | [Entity](Entity.md) | | [CellTypeTaxon](CellTypeTaxon.md) | [type](type.md) | domain | [Entity](Entity.md) | | [CellTypeTaxon](CellTypeTaxon.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [CellTypeTaxon](CellTypeTaxon.md) | [category](category.md) | domain | [Entity](Entity.md) | | [ClusteringProcess](ClusteringProcess.md) | [id](id.md) | domain | [Entity](Entity.md) | | [ClusteringProcess](ClusteringProcess.md) | [type](type.md) | domain | [Entity](Entity.md) | | [ClusteringProcess](ClusteringProcess.md) | [name](name.md) | domain | [Entity](Entity.md) | | [ClusteringProcess](ClusteringProcess.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [ClusteringProcess](ClusteringProcess.md) | [category](category.md) | domain | [Entity](Entity.md) | | [ClusterSet](ClusterSet.md) | [id](id.md) | domain | [Entity](Entity.md) | | [ClusterSet](ClusterSet.md) | [name](name.md) | domain | [Entity](Entity.md) | | [ClusterSet](ClusterSet.md) | [type](type.md) | domain | [Entity](Entity.md) | | [ClusterSet](ClusterSet.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [ClusterSet](ClusterSet.md) | [category](category.md) | domain | [Entity](Entity.md) | | [Cluster](Cluster.md) | [id](id.md) | domain | [Entity](Entity.md) | | [Cluster](Cluster.md) | [name](name.md) | domain | [Entity](Entity.md) | | [Cluster](Cluster.md) | [type](type.md) | domain | [Entity](Entity.md) | | [Cluster](Cluster.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [Cluster](Cluster.md) | [category](category.md) | domain | [Entity](Entity.md) | | [ObservationMatrixCreationProcess](ObservationMatrixCreationProcess.md) | [id](id.md) | domain | [Entity](Entity.md) | | [ObservationMatrixCreationProcess](ObservationMatrixCreationProcess.md) | [type](type.md) | domain | [Entity](Entity.md) | | [ObservationMatrixCreationProcess](ObservationMatrixCreationProcess.md) | [name](name.md) | domain | [Entity](Entity.md) | | [ObservationMatrixCreationProcess](ObservationMatrixCreationProcess.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [ObservationMatrixCreationProcess](ObservationMatrixCreationProcess.md) | [category](category.md) | domain | [Entity](Entity.md) | | [ObservationMatrix](ObservationMatrix.md) | [id](id.md) | domain | [Entity](Entity.md) | | [ObservationMatrix](ObservationMatrix.md) | [type](type.md) | domain | [Entity](Entity.md) | | [ObservationMatrix](ObservationMatrix.md) | [name](name.md) | domain | [Entity](Entity.md) | | [ObservationMatrix](ObservationMatrix.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [ObservationMatrix](ObservationMatrix.md) | [category](category.md) | domain | [Entity](Entity.md) | | [ObservationRow](ObservationRow.md) | [id](id.md) | domain | [Entity](Entity.md) | | [ObservationRow](ObservationRow.md) | [type](type.md) | domain | [Entity](Entity.md) | | [ObservationRow](ObservationRow.md) | [name](name.md) | domain | [Entity](Entity.md) | | [ObservationRow](ObservationRow.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [ObservationRow](ObservationRow.md) | [category](category.md) | domain | [Entity](Entity.md) | | [CellSpecimen](CellSpecimen.md) | [id](id.md) | domain | [Entity](Entity.md) | | [CellSpecimen](CellSpecimen.md) | [type](type.md) | domain | [Entity](Entity.md) | | [CellSpecimen](CellSpecimen.md) | [name](name.md) | domain | [Entity](Entity.md) | | [CellSpecimen](CellSpecimen.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [CellSpecimen](CellSpecimen.md) | [category](category.md) | domain | [Entity](Entity.md) | | [Abbreviation](Abbreviation.md) | [id](id.md) | domain | [Entity](Entity.md) | | [Abbreviation](Abbreviation.md) | [type](type.md) | domain | [Entity](Entity.md) | | [Abbreviation](Abbreviation.md) | [name](name.md) | domain | [Entity](Entity.md) | | [Abbreviation](Abbreviation.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [Abbreviation](Abbreviation.md) | [category](category.md) | domain | [Entity](Entity.md) | | [MatrixFile](MatrixFile.md) | [id](id.md) | domain | [Entity](Entity.md) | | [MatrixFile](MatrixFile.md) | [type](type.md) | domain | [Entity](Entity.md) | | [MatrixFile](MatrixFile.md) | [name](name.md) | domain | [Entity](Entity.md) | | [MatrixFile](MatrixFile.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [MatrixFile](MatrixFile.md) | [category](category.md) | domain | [Entity](Entity.md) | | [ColorPalette](ColorPalette.md) | [id](id.md) | domain | [Entity](Entity.md) | | [ColorPalette](ColorPalette.md) | [name](name.md) | domain | [Entity](Entity.md) | | [ColorPalette](ColorPalette.md) | [type](type.md) | domain | [Entity](Entity.md) | | [ColorPalette](ColorPalette.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [ColorPalette](ColorPalette.md) | [category](category.md) | domain | [Entity](Entity.md) | | [DisplayColor](DisplayColor.md) | [id](id.md) | domain | [Entity](Entity.md) | | [DisplayColor](DisplayColor.md) | [type](type.md) | domain | [Entity](Entity.md) | | [DisplayColor](DisplayColor.md) | [name](name.md) | domain | [Entity](Entity.md) | | [DisplayColor](DisplayColor.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [DisplayColor](DisplayColor.md) | [category](category.md) | domain | [Entity](Entity.md) | | [SpatialProportions](SpatialProportions.md) | [id](id.md) | domain | [Entity](Entity.md) | | [SpatialProportions](SpatialProportions.md) | [type](type.md) | domain | [Entity](Entity.md) | | [SpatialProportions](SpatialProportions.md) | [name](name.md) | domain | [Entity](Entity.md) | | [SpatialProportions](SpatialProportions.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [SpatialProportions](SpatialProportions.md) | [category](category.md) | domain | [Entity](Entity.md) | | [OntologyClass](OntologyClass.md) | [id](id.md) | domain | [Entity](Entity.md) | | [Attribute](Attribute.md) | [id](id.md) | domain | [Entity](Entity.md) | | [Attribute](Attribute.md) | [type](type.md) | domain | [Entity](Entity.md) | | [Attribute](Attribute.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [Attribute](Attribute.md) | [name](name.md) | domain | [Entity](Entity.md) | | [Attribute](Attribute.md) | [category](category.md) | domain | [Entity](Entity.md) | | [Entity](Entity.md) | [id](id.md) | domain | [Entity](Entity.md) | | [Entity](Entity.md) | [category](category.md) | domain | [Entity](Entity.md) | | [Entity](Entity.md) | [type](type.md) | domain | [Entity](Entity.md) | | [Entity](Entity.md) | [name](name.md) | domain | [Entity](Entity.md) | | [Entity](Entity.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [NamedThing](NamedThing.md) | [id](id.md) | domain | [Entity](Entity.md) | | [NamedThing](NamedThing.md) | [type](type.md) | domain | [Entity](Entity.md) | | [NamedThing](NamedThing.md) | [name](name.md) | domain | [Entity](Entity.md) | | [NamedThing](NamedThing.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [NamedThing](NamedThing.md) | [category](category.md) | domain | [Entity](Entity.md) | | [TaxonomicRank](TaxonomicRank.md) | [id](id.md) | domain | [Entity](Entity.md) | | [OrganismTaxon](OrganismTaxon.md) | [id](id.md) | domain | [Entity](Entity.md) | | [OrganismTaxon](OrganismTaxon.md) | [type](type.md) | domain | [Entity](Entity.md) | | [OrganismTaxon](OrganismTaxon.md) | [name](name.md) | domain | [Entity](Entity.md) | | [OrganismTaxon](OrganismTaxon.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [OrganismTaxon](OrganismTaxon.md) | [category](category.md) | domain | [Entity](Entity.md) | | [StudyResult](StudyResult.md) | [id](id.md) | domain | [Entity](Entity.md) | | [StudyResult](StudyResult.md) | [type](type.md) | domain | [Entity](Entity.md) | | [StudyResult](StudyResult.md) | [name](name.md) | domain | [Entity](Entity.md) | | [StudyResult](StudyResult.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [StudyResult](StudyResult.md) | [category](category.md) | domain | [Entity](Entity.md) | | [RelativeFrequencyAnalysisResult](RelativeFrequencyAnalysisResult.md) | [id](id.md) | domain | [Entity](Entity.md) | | [RelativeFrequencyAnalysisResult](RelativeFrequencyAnalysisResult.md) | [type](type.md) | domain | [Entity](Entity.md) | | [RelativeFrequencyAnalysisResult](RelativeFrequencyAnalysisResult.md) | [name](name.md) | domain | [Entity](Entity.md) | | [RelativeFrequencyAnalysisResult](RelativeFrequencyAnalysisResult.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [RelativeFrequencyAnalysisResult](RelativeFrequencyAnalysisResult.md) | [category](category.md) | domain | [Entity](Entity.md) | | [InformationContentEntity](InformationContentEntity.md) | [id](id.md) | domain | [Entity](Entity.md) | | [InformationContentEntity](InformationContentEntity.md) | [type](type.md) | domain | [Entity](Entity.md) | | [InformationContentEntity](InformationContentEntity.md) | [name](name.md) | domain | [Entity](Entity.md) | | [InformationContentEntity](InformationContentEntity.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [InformationContentEntity](InformationContentEntity.md) | [category](category.md) | domain | [Entity](Entity.md) | | [Dataset](Dataset.md) | [id](id.md) | domain | [Entity](Entity.md) | | [Dataset](Dataset.md) | [type](type.md) | domain | [Entity](Entity.md) | | [Dataset](Dataset.md) | [name](name.md) | domain | [Entity](Entity.md) | | [Dataset](Dataset.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [Dataset](Dataset.md) | [category](category.md) | domain | [Entity](Entity.md) | | [PhysicalEntity](PhysicalEntity.md) | [id](id.md) | domain | [Entity](Entity.md) | | [PhysicalEntity](PhysicalEntity.md) | [type](type.md) | domain | [Entity](Entity.md) | | [PhysicalEntity](PhysicalEntity.md) | [name](name.md) | domain | [Entity](Entity.md) | | [PhysicalEntity](PhysicalEntity.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [PhysicalEntity](PhysicalEntity.md) | [category](category.md) | domain | [Entity](Entity.md) | | [Activity](Activity.md) | [id](id.md) | domain | [Entity](Entity.md) | | [Activity](Activity.md) | [type](type.md) | domain | [Entity](Entity.md) | | [Activity](Activity.md) | [name](name.md) | domain | [Entity](Entity.md) | | [Activity](Activity.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [Activity](Activity.md) | [category](category.md) | domain | [Entity](Entity.md) | | [Procedure](Procedure.md) | [id](id.md) | domain | [Entity](Entity.md) | | [Procedure](Procedure.md) | [type](type.md) | domain | [Entity](Entity.md) | | [Procedure](Procedure.md) | [name](name.md) | domain | [Entity](Entity.md) | | [Procedure](Procedure.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [Procedure](Procedure.md) | [category](category.md) | domain | [Entity](Entity.md) | | [MaterialSample](MaterialSample.md) | [id](id.md) | domain | [Entity](Entity.md) | | [MaterialSample](MaterialSample.md) | [type](type.md) | domain | [Entity](Entity.md) | | [MaterialSample](MaterialSample.md) | [name](name.md) | domain | [Entity](Entity.md) | | [MaterialSample](MaterialSample.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [MaterialSample](MaterialSample.md) | [category](category.md) | domain | [Entity](Entity.md) | | [BiologicalEntity](BiologicalEntity.md) | [id](id.md) | domain | [Entity](Entity.md) | | [BiologicalEntity](BiologicalEntity.md) | [type](type.md) | domain | [Entity](Entity.md) | | [BiologicalEntity](BiologicalEntity.md) | [name](name.md) | domain | [Entity](Entity.md) | | [BiologicalEntity](BiologicalEntity.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [BiologicalEntity](BiologicalEntity.md) | [category](category.md) | domain | [Entity](Entity.md) | | [MacromolecularMachineMixin](MacromolecularMachineMixin.md) | [name](name.md) | domain | [Entity](Entity.md) | | [GeneOrGeneProduct](GeneOrGeneProduct.md) | [name](name.md) | domain | [Entity](Entity.md) | | [Gene](Gene.md) | [id](id.md) | domain | [Entity](Entity.md) | | [Gene](Gene.md) | [type](type.md) | domain | [Entity](Entity.md) | | [Gene](Gene.md) | [name](name.md) | domain | [Entity](Entity.md) | | [Gene](Gene.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [Gene](Gene.md) | [category](category.md) | domain | [Entity](Entity.md) | | [Genome](Genome.md) | [id](id.md) | domain | [Entity](Entity.md) | | [Genome](Genome.md) | [type](type.md) | domain | [Entity](Entity.md) | | [Genome](Genome.md) | [name](name.md) | domain | [Entity](Entity.md) | | [Genome](Genome.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [Genome](Genome.md) | [category](category.md) | domain | [Entity](Entity.md) | | [VersionedNamedThing](VersionedNamedThing.md) | [id](id.md) | domain | [Entity](Entity.md) | | [VersionedNamedThing](VersionedNamedThing.md) | [type](type.md) | domain | [Entity](Entity.md) | | [VersionedNamedThing](VersionedNamedThing.md) | [name](name.md) | domain | [Entity](Entity.md) | | [VersionedNamedThing](VersionedNamedThing.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [VersionedNamedThing](VersionedNamedThing.md) | [category](category.md) | domain | [Entity](Entity.md) | | [Checksum](Checksum.md) | [id](id.md) | domain | [Entity](Entity.md) | | [Checksum](Checksum.md) | [category](category.md) | domain | [Entity](Entity.md) | | [Checksum](Checksum.md) | [type](type.md) | domain | [Entity](Entity.md) | | [Checksum](Checksum.md) | [name](name.md) | domain | [Entity](Entity.md) | | [Checksum](Checksum.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [GeneAnnotation](GeneAnnotation.md) | [id](id.md) | domain | [Entity](Entity.md) | | [GeneAnnotation](GeneAnnotation.md) | [type](type.md) | domain | [Entity](Entity.md) | | [GeneAnnotation](GeneAnnotation.md) | [name](name.md) | domain | [Entity](Entity.md) | | [GeneAnnotation](GeneAnnotation.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [GeneAnnotation](GeneAnnotation.md) | [category](category.md) | domain | [Entity](Entity.md) | | [GenomeAnnotation](GenomeAnnotation.md) | [id](id.md) | domain | [Entity](Entity.md) | | [GenomeAnnotation](GenomeAnnotation.md) | [type](type.md) | domain | [Entity](Entity.md) | | [GenomeAnnotation](GenomeAnnotation.md) | [name](name.md) | domain | [Entity](Entity.md) | | [GenomeAnnotation](GenomeAnnotation.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [GenomeAnnotation](GenomeAnnotation.md) | [category](category.md) | domain | [Entity](Entity.md) | | [GenomeAssembly](GenomeAssembly.md) | [id](id.md) | domain | [Entity](Entity.md) | | [GenomeAssembly](GenomeAssembly.md) | [type](type.md) | domain | [Entity](Entity.md) | | [GenomeAssembly](GenomeAssembly.md) | [name](name.md) | domain | [Entity](Entity.md) | | [GenomeAssembly](GenomeAssembly.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [GenomeAssembly](GenomeAssembly.md) | [category](category.md) | domain | [Entity](Entity.md) | | [ImageDataset](ImageDataset.md) | [id](id.md) | domain | [Entity](Entity.md) | | [ImageDataset](ImageDataset.md) | [type](type.md) | domain | [Entity](Entity.md) | | [ImageDataset](ImageDataset.md) | [name](name.md) | domain | [Entity](Entity.md) | | [ImageDataset](ImageDataset.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [ImageDataset](ImageDataset.md) | [category](category.md) | domain | [Entity](Entity.md) | | [AnatomicalSpace](AnatomicalSpace.md) | [id](id.md) | domain | [Entity](Entity.md) | | [AnatomicalSpace](AnatomicalSpace.md) | [type](type.md) | domain | [Entity](Entity.md) | | [AnatomicalSpace](AnatomicalSpace.md) | [name](name.md) | domain | [Entity](Entity.md) | | [AnatomicalSpace](AnatomicalSpace.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [AnatomicalSpace](AnatomicalSpace.md) | [category](category.md) | domain | [Entity](Entity.md) | | [ParcellationTerminology](ParcellationTerminology.md) | [id](id.md) | domain | [Entity](Entity.md) | | [ParcellationTerminology](ParcellationTerminology.md) | [type](type.md) | domain | [Entity](Entity.md) | | [ParcellationTerminology](ParcellationTerminology.md) | [name](name.md) | domain | [Entity](Entity.md) | | [ParcellationTerminology](ParcellationTerminology.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [ParcellationTerminology](ParcellationTerminology.md) | [category](category.md) | domain | [Entity](Entity.md) | | [ParcellationTermSet](ParcellationTermSet.md) | [id](id.md) | domain | [Entity](Entity.md) | | [ParcellationTermSet](ParcellationTermSet.md) | [type](type.md) | domain | [Entity](Entity.md) | | [ParcellationTermSet](ParcellationTermSet.md) | [name](name.md) | domain | [Entity](Entity.md) | | [ParcellationTermSet](ParcellationTermSet.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [ParcellationTermSet](ParcellationTermSet.md) | [category](category.md) | domain | [Entity](Entity.md) | | [ParcellationTerm](ParcellationTerm.md) | [id](id.md) | domain | [Entity](Entity.md) | | [ParcellationTerm](ParcellationTerm.md) | [type](type.md) | domain | [Entity](Entity.md) | | [ParcellationTerm](ParcellationTerm.md) | [name](name.md) | domain | [Entity](Entity.md) | | [ParcellationTerm](ParcellationTerm.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [ParcellationTerm](ParcellationTerm.md) | [category](category.md) | domain | [Entity](Entity.md) | | [ParcellationColorScheme](ParcellationColorScheme.md) | [id](id.md) | domain | [Entity](Entity.md) | | [ParcellationColorScheme](ParcellationColorScheme.md) | [type](type.md) | domain | [Entity](Entity.md) | | [ParcellationColorScheme](ParcellationColorScheme.md) | [name](name.md) | domain | [Entity](Entity.md) | | [ParcellationColorScheme](ParcellationColorScheme.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [ParcellationColorScheme](ParcellationColorScheme.md) | [category](category.md) | domain | [Entity](Entity.md) | | [AnatomicalAnnotationSet](AnatomicalAnnotationSet.md) | [id](id.md) | domain | [Entity](Entity.md) | | [AnatomicalAnnotationSet](AnatomicalAnnotationSet.md) | [type](type.md) | domain | [Entity](Entity.md) | | [AnatomicalAnnotationSet](AnatomicalAnnotationSet.md) | [name](name.md) | domain | [Entity](Entity.md) | | [AnatomicalAnnotationSet](AnatomicalAnnotationSet.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [AnatomicalAnnotationSet](AnatomicalAnnotationSet.md) | [category](category.md) | domain | [Entity](Entity.md) | | [ParcellationAtlas](ParcellationAtlas.md) | [id](id.md) | domain | [Entity](Entity.md) | | [ParcellationAtlas](ParcellationAtlas.md) | [type](type.md) | domain | [Entity](Entity.md) | | [ParcellationAtlas](ParcellationAtlas.md) | [name](name.md) | domain | [Entity](Entity.md) | | [ParcellationAtlas](ParcellationAtlas.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [ParcellationAtlas](ParcellationAtlas.md) | [category](category.md) | domain | [Entity](Entity.md) | ## Identifier and Mapping Information ### Schema Source * from schema: https://w3id.org/brain-bican/bke-taxonomy ## Mappings | Mapping Type | Mapped Value | | --- | --- | | self | biolink:Entity | | native | bican:Entity | ## LinkML Source ### Direct
### Induced
classDiagram
class Entity
click Entity href "../Entity/"
Entity <|-- NamedThing
click NamedThing href "../NamedThing/"
Entity <|-- Checksum
click Checksum href "../Checksum/"
Entity : category
Entity : deprecated
Entity : description
Entity : has_attribute
Entity --> "*" Attribute : has_attribute
click Attribute href "../Attribute/"
Entity : id
Entity : iri
Entity : name
Entity : type
## Inheritance
* **Entity**
* [NamedThing](NamedThing.md)
* [Checksum](Checksum.md)
## Class Properties
| Property | Value |
| --- | --- |
| Class URI | [biolink:Entity](https://w3id.org/biolink/vocab/Entity) |
## Slots
| Name | Cardinality and Range | Description | Inheritance |
| --- | --- | --- | --- |
| [id](id.md) | 1 [String](String.md) | A unique identifier for an entity | direct | | [iri](iri.md) | 0..1
[IriType](IriType.md) | An IRI for an entity | direct | | [category](category.md) | *
[Uriorcurie](Uriorcurie.md) | Name of the high level ontology class in which this entity is categorized | direct | | [type](type.md) | *
[String](String.md) | | direct | | [name](name.md) | 0..1
[LabelType](LabelType.md) | A human-readable name for an attribute or entity | direct | | [description](description.md) | 0..1
[NarrativeText](NarrativeText.md) | a human-readable description of an entity | direct | | [has_attribute](has_attribute.md) | *
[Attribute](Attribute.md) | connects any entity to an attribute | direct | | [deprecated](deprecated.md) | 0..1
[Boolean](Boolean.md) | A boolean flag indicating that an entity is no longer considered current or v... | direct | ## Usages | used by | used in | type | used | | --- | --- | --- | --- | | [CellTypeTaxonomyCreationProcess](CellTypeTaxonomyCreationProcess.md) | [id](id.md) | domain | [Entity](Entity.md) | | [CellTypeTaxonomyCreationProcess](CellTypeTaxonomyCreationProcess.md) | [type](type.md) | domain | [Entity](Entity.md) | | [CellTypeTaxonomyCreationProcess](CellTypeTaxonomyCreationProcess.md) | [name](name.md) | domain | [Entity](Entity.md) | | [CellTypeTaxonomyCreationProcess](CellTypeTaxonomyCreationProcess.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [CellTypeTaxonomyCreationProcess](CellTypeTaxonomyCreationProcess.md) | [category](category.md) | domain | [Entity](Entity.md) | | [CellTypeTaxonomy](CellTypeTaxonomy.md) | [id](id.md) | domain | [Entity](Entity.md) | | [CellTypeTaxonomy](CellTypeTaxonomy.md) | [name](name.md) | domain | [Entity](Entity.md) | | [CellTypeTaxonomy](CellTypeTaxonomy.md) | [type](type.md) | domain | [Entity](Entity.md) | | [CellTypeTaxonomy](CellTypeTaxonomy.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [CellTypeTaxonomy](CellTypeTaxonomy.md) | [category](category.md) | domain | [Entity](Entity.md) | | [CellTypeSet](CellTypeSet.md) | [id](id.md) | domain | [Entity](Entity.md) | | [CellTypeSet](CellTypeSet.md) | [name](name.md) | domain | [Entity](Entity.md) | | [CellTypeSet](CellTypeSet.md) | [type](type.md) | domain | [Entity](Entity.md) | | [CellTypeSet](CellTypeSet.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [CellTypeSet](CellTypeSet.md) | [category](category.md) | domain | [Entity](Entity.md) | | [CellTypeTaxon](CellTypeTaxon.md) | [id](id.md) | domain | [Entity](Entity.md) | | [CellTypeTaxon](CellTypeTaxon.md) | [name](name.md) | domain | [Entity](Entity.md) | | [CellTypeTaxon](CellTypeTaxon.md) | [type](type.md) | domain | [Entity](Entity.md) | | [CellTypeTaxon](CellTypeTaxon.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [CellTypeTaxon](CellTypeTaxon.md) | [category](category.md) | domain | [Entity](Entity.md) | | [ClusteringProcess](ClusteringProcess.md) | [id](id.md) | domain | [Entity](Entity.md) | | [ClusteringProcess](ClusteringProcess.md) | [type](type.md) | domain | [Entity](Entity.md) | | [ClusteringProcess](ClusteringProcess.md) | [name](name.md) | domain | [Entity](Entity.md) | | [ClusteringProcess](ClusteringProcess.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [ClusteringProcess](ClusteringProcess.md) | [category](category.md) | domain | [Entity](Entity.md) | | [ClusterSet](ClusterSet.md) | [id](id.md) | domain | [Entity](Entity.md) | | [ClusterSet](ClusterSet.md) | [name](name.md) | domain | [Entity](Entity.md) | | [ClusterSet](ClusterSet.md) | [type](type.md) | domain | [Entity](Entity.md) | | [ClusterSet](ClusterSet.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [ClusterSet](ClusterSet.md) | [category](category.md) | domain | [Entity](Entity.md) | | [Cluster](Cluster.md) | [id](id.md) | domain | [Entity](Entity.md) | | [Cluster](Cluster.md) | [name](name.md) | domain | [Entity](Entity.md) | | [Cluster](Cluster.md) | [type](type.md) | domain | [Entity](Entity.md) | | [Cluster](Cluster.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [Cluster](Cluster.md) | [category](category.md) | domain | [Entity](Entity.md) | | [ObservationMatrixCreationProcess](ObservationMatrixCreationProcess.md) | [id](id.md) | domain | [Entity](Entity.md) | | [ObservationMatrixCreationProcess](ObservationMatrixCreationProcess.md) | [type](type.md) | domain | [Entity](Entity.md) | | [ObservationMatrixCreationProcess](ObservationMatrixCreationProcess.md) | [name](name.md) | domain | [Entity](Entity.md) | | [ObservationMatrixCreationProcess](ObservationMatrixCreationProcess.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [ObservationMatrixCreationProcess](ObservationMatrixCreationProcess.md) | [category](category.md) | domain | [Entity](Entity.md) | | [ObservationMatrix](ObservationMatrix.md) | [id](id.md) | domain | [Entity](Entity.md) | | [ObservationMatrix](ObservationMatrix.md) | [type](type.md) | domain | [Entity](Entity.md) | | [ObservationMatrix](ObservationMatrix.md) | [name](name.md) | domain | [Entity](Entity.md) | | [ObservationMatrix](ObservationMatrix.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [ObservationMatrix](ObservationMatrix.md) | [category](category.md) | domain | [Entity](Entity.md) | | [ObservationRow](ObservationRow.md) | [id](id.md) | domain | [Entity](Entity.md) | | [ObservationRow](ObservationRow.md) | [type](type.md) | domain | [Entity](Entity.md) | | [ObservationRow](ObservationRow.md) | [name](name.md) | domain | [Entity](Entity.md) | | [ObservationRow](ObservationRow.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [ObservationRow](ObservationRow.md) | [category](category.md) | domain | [Entity](Entity.md) | | [CellSpecimen](CellSpecimen.md) | [id](id.md) | domain | [Entity](Entity.md) | | [CellSpecimen](CellSpecimen.md) | [type](type.md) | domain | [Entity](Entity.md) | | [CellSpecimen](CellSpecimen.md) | [name](name.md) | domain | [Entity](Entity.md) | | [CellSpecimen](CellSpecimen.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [CellSpecimen](CellSpecimen.md) | [category](category.md) | domain | [Entity](Entity.md) | | [Abbreviation](Abbreviation.md) | [id](id.md) | domain | [Entity](Entity.md) | | [Abbreviation](Abbreviation.md) | [type](type.md) | domain | [Entity](Entity.md) | | [Abbreviation](Abbreviation.md) | [name](name.md) | domain | [Entity](Entity.md) | | [Abbreviation](Abbreviation.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [Abbreviation](Abbreviation.md) | [category](category.md) | domain | [Entity](Entity.md) | | [MatrixFile](MatrixFile.md) | [id](id.md) | domain | [Entity](Entity.md) | | [MatrixFile](MatrixFile.md) | [type](type.md) | domain | [Entity](Entity.md) | | [MatrixFile](MatrixFile.md) | [name](name.md) | domain | [Entity](Entity.md) | | [MatrixFile](MatrixFile.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [MatrixFile](MatrixFile.md) | [category](category.md) | domain | [Entity](Entity.md) | | [ColorPalette](ColorPalette.md) | [id](id.md) | domain | [Entity](Entity.md) | | [ColorPalette](ColorPalette.md) | [name](name.md) | domain | [Entity](Entity.md) | | [ColorPalette](ColorPalette.md) | [type](type.md) | domain | [Entity](Entity.md) | | [ColorPalette](ColorPalette.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [ColorPalette](ColorPalette.md) | [category](category.md) | domain | [Entity](Entity.md) | | [DisplayColor](DisplayColor.md) | [id](id.md) | domain | [Entity](Entity.md) | | [DisplayColor](DisplayColor.md) | [type](type.md) | domain | [Entity](Entity.md) | | [DisplayColor](DisplayColor.md) | [name](name.md) | domain | [Entity](Entity.md) | | [DisplayColor](DisplayColor.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [DisplayColor](DisplayColor.md) | [category](category.md) | domain | [Entity](Entity.md) | | [SpatialProportions](SpatialProportions.md) | [id](id.md) | domain | [Entity](Entity.md) | | [SpatialProportions](SpatialProportions.md) | [type](type.md) | domain | [Entity](Entity.md) | | [SpatialProportions](SpatialProportions.md) | [name](name.md) | domain | [Entity](Entity.md) | | [SpatialProportions](SpatialProportions.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [SpatialProportions](SpatialProportions.md) | [category](category.md) | domain | [Entity](Entity.md) | | [OntologyClass](OntologyClass.md) | [id](id.md) | domain | [Entity](Entity.md) | | [Attribute](Attribute.md) | [id](id.md) | domain | [Entity](Entity.md) | | [Attribute](Attribute.md) | [type](type.md) | domain | [Entity](Entity.md) | | [Attribute](Attribute.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [Attribute](Attribute.md) | [name](name.md) | domain | [Entity](Entity.md) | | [Attribute](Attribute.md) | [category](category.md) | domain | [Entity](Entity.md) | | [Entity](Entity.md) | [id](id.md) | domain | [Entity](Entity.md) | | [Entity](Entity.md) | [category](category.md) | domain | [Entity](Entity.md) | | [Entity](Entity.md) | [type](type.md) | domain | [Entity](Entity.md) | | [Entity](Entity.md) | [name](name.md) | domain | [Entity](Entity.md) | | [Entity](Entity.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [NamedThing](NamedThing.md) | [id](id.md) | domain | [Entity](Entity.md) | | [NamedThing](NamedThing.md) | [type](type.md) | domain | [Entity](Entity.md) | | [NamedThing](NamedThing.md) | [name](name.md) | domain | [Entity](Entity.md) | | [NamedThing](NamedThing.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [NamedThing](NamedThing.md) | [category](category.md) | domain | [Entity](Entity.md) | | [TaxonomicRank](TaxonomicRank.md) | [id](id.md) | domain | [Entity](Entity.md) | | [OrganismTaxon](OrganismTaxon.md) | [id](id.md) | domain | [Entity](Entity.md) | | [OrganismTaxon](OrganismTaxon.md) | [type](type.md) | domain | [Entity](Entity.md) | | [OrganismTaxon](OrganismTaxon.md) | [name](name.md) | domain | [Entity](Entity.md) | | [OrganismTaxon](OrganismTaxon.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [OrganismTaxon](OrganismTaxon.md) | [category](category.md) | domain | [Entity](Entity.md) | | [StudyResult](StudyResult.md) | [id](id.md) | domain | [Entity](Entity.md) | | [StudyResult](StudyResult.md) | [type](type.md) | domain | [Entity](Entity.md) | | [StudyResult](StudyResult.md) | [name](name.md) | domain | [Entity](Entity.md) | | [StudyResult](StudyResult.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [StudyResult](StudyResult.md) | [category](category.md) | domain | [Entity](Entity.md) | | [RelativeFrequencyAnalysisResult](RelativeFrequencyAnalysisResult.md) | [id](id.md) | domain | [Entity](Entity.md) | | [RelativeFrequencyAnalysisResult](RelativeFrequencyAnalysisResult.md) | [type](type.md) | domain | [Entity](Entity.md) | | [RelativeFrequencyAnalysisResult](RelativeFrequencyAnalysisResult.md) | [name](name.md) | domain | [Entity](Entity.md) | | [RelativeFrequencyAnalysisResult](RelativeFrequencyAnalysisResult.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [RelativeFrequencyAnalysisResult](RelativeFrequencyAnalysisResult.md) | [category](category.md) | domain | [Entity](Entity.md) | | [InformationContentEntity](InformationContentEntity.md) | [id](id.md) | domain | [Entity](Entity.md) | | [InformationContentEntity](InformationContentEntity.md) | [type](type.md) | domain | [Entity](Entity.md) | | [InformationContentEntity](InformationContentEntity.md) | [name](name.md) | domain | [Entity](Entity.md) | | [InformationContentEntity](InformationContentEntity.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [InformationContentEntity](InformationContentEntity.md) | [category](category.md) | domain | [Entity](Entity.md) | | [Dataset](Dataset.md) | [id](id.md) | domain | [Entity](Entity.md) | | [Dataset](Dataset.md) | [type](type.md) | domain | [Entity](Entity.md) | | [Dataset](Dataset.md) | [name](name.md) | domain | [Entity](Entity.md) | | [Dataset](Dataset.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [Dataset](Dataset.md) | [category](category.md) | domain | [Entity](Entity.md) | | [PhysicalEntity](PhysicalEntity.md) | [id](id.md) | domain | [Entity](Entity.md) | | [PhysicalEntity](PhysicalEntity.md) | [type](type.md) | domain | [Entity](Entity.md) | | [PhysicalEntity](PhysicalEntity.md) | [name](name.md) | domain | [Entity](Entity.md) | | [PhysicalEntity](PhysicalEntity.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [PhysicalEntity](PhysicalEntity.md) | [category](category.md) | domain | [Entity](Entity.md) | | [Activity](Activity.md) | [id](id.md) | domain | [Entity](Entity.md) | | [Activity](Activity.md) | [type](type.md) | domain | [Entity](Entity.md) | | [Activity](Activity.md) | [name](name.md) | domain | [Entity](Entity.md) | | [Activity](Activity.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [Activity](Activity.md) | [category](category.md) | domain | [Entity](Entity.md) | | [Procedure](Procedure.md) | [id](id.md) | domain | [Entity](Entity.md) | | [Procedure](Procedure.md) | [type](type.md) | domain | [Entity](Entity.md) | | [Procedure](Procedure.md) | [name](name.md) | domain | [Entity](Entity.md) | | [Procedure](Procedure.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [Procedure](Procedure.md) | [category](category.md) | domain | [Entity](Entity.md) | | [MaterialSample](MaterialSample.md) | [id](id.md) | domain | [Entity](Entity.md) | | [MaterialSample](MaterialSample.md) | [type](type.md) | domain | [Entity](Entity.md) | | [MaterialSample](MaterialSample.md) | [name](name.md) | domain | [Entity](Entity.md) | | [MaterialSample](MaterialSample.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [MaterialSample](MaterialSample.md) | [category](category.md) | domain | [Entity](Entity.md) | | [BiologicalEntity](BiologicalEntity.md) | [id](id.md) | domain | [Entity](Entity.md) | | [BiologicalEntity](BiologicalEntity.md) | [type](type.md) | domain | [Entity](Entity.md) | | [BiologicalEntity](BiologicalEntity.md) | [name](name.md) | domain | [Entity](Entity.md) | | [BiologicalEntity](BiologicalEntity.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [BiologicalEntity](BiologicalEntity.md) | [category](category.md) | domain | [Entity](Entity.md) | | [MacromolecularMachineMixin](MacromolecularMachineMixin.md) | [name](name.md) | domain | [Entity](Entity.md) | | [GeneOrGeneProduct](GeneOrGeneProduct.md) | [name](name.md) | domain | [Entity](Entity.md) | | [Gene](Gene.md) | [id](id.md) | domain | [Entity](Entity.md) | | [Gene](Gene.md) | [type](type.md) | domain | [Entity](Entity.md) | | [Gene](Gene.md) | [name](name.md) | domain | [Entity](Entity.md) | | [Gene](Gene.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [Gene](Gene.md) | [category](category.md) | domain | [Entity](Entity.md) | | [Genome](Genome.md) | [id](id.md) | domain | [Entity](Entity.md) | | [Genome](Genome.md) | [type](type.md) | domain | [Entity](Entity.md) | | [Genome](Genome.md) | [name](name.md) | domain | [Entity](Entity.md) | | [Genome](Genome.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [Genome](Genome.md) | [category](category.md) | domain | [Entity](Entity.md) | | [VersionedNamedThing](VersionedNamedThing.md) | [id](id.md) | domain | [Entity](Entity.md) | | [VersionedNamedThing](VersionedNamedThing.md) | [type](type.md) | domain | [Entity](Entity.md) | | [VersionedNamedThing](VersionedNamedThing.md) | [name](name.md) | domain | [Entity](Entity.md) | | [VersionedNamedThing](VersionedNamedThing.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [VersionedNamedThing](VersionedNamedThing.md) | [category](category.md) | domain | [Entity](Entity.md) | | [Checksum](Checksum.md) | [id](id.md) | domain | [Entity](Entity.md) | | [Checksum](Checksum.md) | [category](category.md) | domain | [Entity](Entity.md) | | [Checksum](Checksum.md) | [type](type.md) | domain | [Entity](Entity.md) | | [Checksum](Checksum.md) | [name](name.md) | domain | [Entity](Entity.md) | | [Checksum](Checksum.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [GeneAnnotation](GeneAnnotation.md) | [id](id.md) | domain | [Entity](Entity.md) | | [GeneAnnotation](GeneAnnotation.md) | [type](type.md) | domain | [Entity](Entity.md) | | [GeneAnnotation](GeneAnnotation.md) | [name](name.md) | domain | [Entity](Entity.md) | | [GeneAnnotation](GeneAnnotation.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [GeneAnnotation](GeneAnnotation.md) | [category](category.md) | domain | [Entity](Entity.md) | | [GenomeAnnotation](GenomeAnnotation.md) | [id](id.md) | domain | [Entity](Entity.md) | | [GenomeAnnotation](GenomeAnnotation.md) | [type](type.md) | domain | [Entity](Entity.md) | | [GenomeAnnotation](GenomeAnnotation.md) | [name](name.md) | domain | [Entity](Entity.md) | | [GenomeAnnotation](GenomeAnnotation.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [GenomeAnnotation](GenomeAnnotation.md) | [category](category.md) | domain | [Entity](Entity.md) | | [GenomeAssembly](GenomeAssembly.md) | [id](id.md) | domain | [Entity](Entity.md) | | [GenomeAssembly](GenomeAssembly.md) | [type](type.md) | domain | [Entity](Entity.md) | | [GenomeAssembly](GenomeAssembly.md) | [name](name.md) | domain | [Entity](Entity.md) | | [GenomeAssembly](GenomeAssembly.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [GenomeAssembly](GenomeAssembly.md) | [category](category.md) | domain | [Entity](Entity.md) | | [ImageDataset](ImageDataset.md) | [id](id.md) | domain | [Entity](Entity.md) | | [ImageDataset](ImageDataset.md) | [type](type.md) | domain | [Entity](Entity.md) | | [ImageDataset](ImageDataset.md) | [name](name.md) | domain | [Entity](Entity.md) | | [ImageDataset](ImageDataset.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [ImageDataset](ImageDataset.md) | [category](category.md) | domain | [Entity](Entity.md) | | [AnatomicalSpace](AnatomicalSpace.md) | [id](id.md) | domain | [Entity](Entity.md) | | [AnatomicalSpace](AnatomicalSpace.md) | [type](type.md) | domain | [Entity](Entity.md) | | [AnatomicalSpace](AnatomicalSpace.md) | [name](name.md) | domain | [Entity](Entity.md) | | [AnatomicalSpace](AnatomicalSpace.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [AnatomicalSpace](AnatomicalSpace.md) | [category](category.md) | domain | [Entity](Entity.md) | | [ParcellationTerminology](ParcellationTerminology.md) | [id](id.md) | domain | [Entity](Entity.md) | | [ParcellationTerminology](ParcellationTerminology.md) | [type](type.md) | domain | [Entity](Entity.md) | | [ParcellationTerminology](ParcellationTerminology.md) | [name](name.md) | domain | [Entity](Entity.md) | | [ParcellationTerminology](ParcellationTerminology.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [ParcellationTerminology](ParcellationTerminology.md) | [category](category.md) | domain | [Entity](Entity.md) | | [ParcellationTermSet](ParcellationTermSet.md) | [id](id.md) | domain | [Entity](Entity.md) | | [ParcellationTermSet](ParcellationTermSet.md) | [type](type.md) | domain | [Entity](Entity.md) | | [ParcellationTermSet](ParcellationTermSet.md) | [name](name.md) | domain | [Entity](Entity.md) | | [ParcellationTermSet](ParcellationTermSet.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [ParcellationTermSet](ParcellationTermSet.md) | [category](category.md) | domain | [Entity](Entity.md) | | [ParcellationTerm](ParcellationTerm.md) | [id](id.md) | domain | [Entity](Entity.md) | | [ParcellationTerm](ParcellationTerm.md) | [type](type.md) | domain | [Entity](Entity.md) | | [ParcellationTerm](ParcellationTerm.md) | [name](name.md) | domain | [Entity](Entity.md) | | [ParcellationTerm](ParcellationTerm.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [ParcellationTerm](ParcellationTerm.md) | [category](category.md) | domain | [Entity](Entity.md) | | [ParcellationColorScheme](ParcellationColorScheme.md) | [id](id.md) | domain | [Entity](Entity.md) | | [ParcellationColorScheme](ParcellationColorScheme.md) | [type](type.md) | domain | [Entity](Entity.md) | | [ParcellationColorScheme](ParcellationColorScheme.md) | [name](name.md) | domain | [Entity](Entity.md) | | [ParcellationColorScheme](ParcellationColorScheme.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [ParcellationColorScheme](ParcellationColorScheme.md) | [category](category.md) | domain | [Entity](Entity.md) | | [AnatomicalAnnotationSet](AnatomicalAnnotationSet.md) | [id](id.md) | domain | [Entity](Entity.md) | | [AnatomicalAnnotationSet](AnatomicalAnnotationSet.md) | [type](type.md) | domain | [Entity](Entity.md) | | [AnatomicalAnnotationSet](AnatomicalAnnotationSet.md) | [name](name.md) | domain | [Entity](Entity.md) | | [AnatomicalAnnotationSet](AnatomicalAnnotationSet.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [AnatomicalAnnotationSet](AnatomicalAnnotationSet.md) | [category](category.md) | domain | [Entity](Entity.md) | | [ParcellationAtlas](ParcellationAtlas.md) | [id](id.md) | domain | [Entity](Entity.md) | | [ParcellationAtlas](ParcellationAtlas.md) | [type](type.md) | domain | [Entity](Entity.md) | | [ParcellationAtlas](ParcellationAtlas.md) | [name](name.md) | domain | [Entity](Entity.md) | | [ParcellationAtlas](ParcellationAtlas.md) | [has_attribute](has_attribute.md) | domain | [Entity](Entity.md) | | [ParcellationAtlas](ParcellationAtlas.md) | [category](category.md) | domain | [Entity](Entity.md) | ## Identifier and Mapping Information ### Schema Source * from schema: https://w3id.org/brain-bican/bke-taxonomy ## Mappings | Mapping Type | Mapped Value | | --- | --- | | self | biolink:Entity | | native | bican:Entity | ## LinkML Source ### Direct
name: entity
definition_uri: https://w3id.org/biolink/vocab/Entity
description: Root Biolink Model class for all things and informational relationships,
real or imagined.
from_schema: https://w3id.org/brain-bican/bke-taxonomy
abstract: true
slots:
- id
- iri
- category
- type
- name
- description
- has attribute
- deprecated
class_uri: biolink:Entity
name: entity
definition_uri: https://w3id.org/biolink/vocab/Entity
description: Root Biolink Model class for all things and informational relationships,
real or imagined.
from_schema: https://w3id.org/brain-bican/bke-taxonomy
abstract: true
attributes:
id:
name: id
definition_uri: https://w3id.org/biolink/vocab/id
description: A unique identifier for an entity. Must be either a CURIE shorthand
for a URI or a complete URI
in_subset:
- translator_minimal
from_schema: https://w3id.org/brain-bican/bke-taxonomy
exact_mappings:
- AGRKB:primaryId
- gff3:ID
- gpi:DB_Object_ID
rank: 1000
domain: entity
slot_uri: biolink:id
identifier: true
owner: entity
domain_of:
- ontology class
- entity
- CellTypeTaxonomy
- CellTypeSet
- CellTypeTaxon
- ClusterSet
- Cluster
- Abbreviation
- ColorPalette
- DisplayColor
- attribute
- named thing
- taxonomic rank
- organism taxon
- study result
- relative frequency analysis result
- information content entity
- dataset
- physical entity
- activity
- procedure
- material sample
- biological entity
- gene
- genome
range: string
required: true
iri:
name: iri
definition_uri: https://w3id.org/biolink/vocab/iri
description: An IRI for an entity. This is determined by the id using expansion
rules.
in_subset:
- translator_minimal
- samples
from_schema: https://w3id.org/brain-bican/bke-taxonomy
exact_mappings:
- WIKIDATA_PROPERTY:P854
rank: 1000
slot_uri: biolink:iri
owner: entity
domain_of:
- attribute
- entity
- named thing
- organism taxon
- study result
- relative frequency analysis result
- information content entity
- dataset
- physical entity
- activity
- procedure
- material sample
- biological entity
- gene
- genome
range: iri type
category:
name: category
definition_uri: https://w3id.org/biolink/vocab/category
description: Name of the high level ontology class in which this entity is categorized.
Corresponds to the label for the biolink entity type class. In a neo4j database
this MAY correspond to the neo4j label tag. In an RDF database it should be
a biolink model class URI. This field is multi-valued. It should include values
for ancestors of the biolink class; for example, a protein such as Shh would
have category values `biolink:Protein`, `biolink:GeneProduct`, `biolink:MolecularEntity`.
In an RDF database, nodes will typically have an rdf:type triples. This can
be to the most specific biolink class, or potentially to a class more specific
than something in biolink. For example, a sequence feature `f` may have a rdf:type
assertion to a SO class such as TF_binding_site, which is more specific than
anything in biolink. Here we would have categories {biolink:GenomicEntity, biolink:MolecularEntity,
biolink:NamedThing}
in_subset:
- translator_minimal
from_schema: https://w3id.org/brain-bican/bke-taxonomy
rank: 1000
is_a: type
domain: entity
slot_uri: biolink:category
designates_type: true
owner: entity
domain_of:
- entity
is_class_field: true
range: uriorcurie
multivalued: true
type:
name: type
definition_uri: https://w3id.org/biolink/vocab/type
from_schema: https://w3id.org/brain-bican/bke-taxonomy
mappings:
- rdf:type
exact_mappings:
- gff3:type
- gpi:DB_Object_Type
rank: 1000
domain: entity
slot_uri: rdf:type
owner: entity
domain_of:
- entity
- attribute
- named thing
- organism taxon
- study result
- relative frequency analysis result
- information content entity
- dataset
- physical entity
- activity
- procedure
- material sample
- biological entity
- gene
- genome
range: string
multivalued: true
name:
name: name
definition_uri: https://w3id.org/biolink/vocab/name
description: A human-readable name for an attribute or entity.
in_subset:
- translator_minimal
- samples
from_schema: https://w3id.org/brain-bican/bke-taxonomy
aliases:
- label
- display name
- title
mappings:
- rdfs:label
exact_mappings:
- gff3:Name
- gpi:DB_Object_Name
narrow_mappings:
- dct:title
- WIKIDATA_PROPERTY:P1476
rank: 1000
domain: entity
slot_uri: rdfs:label
owner: entity
domain_of:
- attribute
- entity
- macromolecular machine mixin
- CellTypeTaxonomy
- CellTypeSet
- CellTypeTaxon
- ClusterSet
- Cluster
- ColorPalette
- named thing
- organism taxon
- study result
- relative frequency analysis result
- information content entity
- dataset
- physical entity
- activity
- procedure
- material sample
- biological entity
- gene
- genome
range: label type
description:
name: description
definition_uri: https://w3id.org/biolink/vocab/description
description: a human-readable description of an entity
in_subset:
- translator_minimal
from_schema: https://w3id.org/brain-bican/bke-taxonomy
aliases:
- definition
mappings:
- dct:description
exact_mappings:
- IAO:0000115
- skos:definitions
narrow_mappings:
- gff3:Description
rank: 1000
slot_uri: dct:description
owner: entity
domain_of:
- entity
- CellTypeTaxonomy
- CellTypeSet
- CellTypeTaxon
- ClusterSet
- ColorPalette
- attribute
- named thing
- organism taxon
- study result
- relative frequency analysis result
- information content entity
- dataset
- physical entity
- activity
- procedure
- material sample
- biological entity
- gene
- genome
range: narrative text
has attribute:
name: has attribute
definition_uri: https://w3id.org/biolink/vocab/has_attribute
description: connects any entity to an attribute
in_subset:
- samples
from_schema: https://w3id.org/brain-bican/bke-taxonomy
exact_mappings:
- SIO:000008
close_mappings:
- OBI:0001927
narrow_mappings:
- OBAN:association_has_subject_property
- OBAN:association_has_object_property
- CPT:has_possibly_included_panel_element
- DRUGBANK:category
- EFO:is_executed_in
- HANCESTRO:0301
- LOINC:has_action_guidance
- LOINC:has_adjustment
- LOINC:has_aggregation_view
- LOINC:has_approach_guidance
- LOINC:has_divisor
- LOINC:has_exam
- LOINC:has_method
- LOINC:has_modality_subtype
- LOINC:has_object_guidance
- LOINC:has_scale
- LOINC:has_suffix
- LOINC:has_time_aspect
- LOINC:has_time_modifier
- LOINC:has_timing_of
- NCIT:R88
- NCIT:eo_disease_has_property_or_attribute
- NCIT:has_data_element
- NCIT:has_pharmaceutical_administration_method
- NCIT:has_pharmaceutical_basic_dose_form
- NCIT:has_pharmaceutical_intended_site
- NCIT:has_pharmaceutical_release_characteristics
- NCIT:has_pharmaceutical_state_of_matter
- NCIT:has_pharmaceutical_transformation
- NCIT:is_qualified_by
- NCIT:qualifier_applies_to
- NCIT:role_has_domain
- NCIT:role_has_range
- INO:0000154
- HANCESTRO:0308
- orphanet:C016
- orphanet:C017
- RO:0000053
- RO:0000086
- RO:0000087
- SNOMED:has_access
- SNOMED:has_clinical_course
- SNOMED:has_count_of_base_of_active_ingredient
- SNOMED:has_dose_form_administration_method
- SNOMED:has_dose_form_release_characteristic
- SNOMED:has_dose_form_transformation
- SNOMED:has_finding_context
- SNOMED:has_finding_informer
- SNOMED:has_inherent_attribute
- SNOMED:has_intent
- SNOMED:has_interpretation
- SNOMED:has_laterality
- SNOMED:has_measurement_method
- SNOMED:has_method
- SNOMED:has_priority
- SNOMED:has_procedure_context
- SNOMED:has_process_duration
- SNOMED:has_property
- SNOMED:has_revision_status
- SNOMED:has_scale_type
- SNOMED:has_severity
- SNOMED:has_specimen
- SNOMED:has_state_of_matter
- SNOMED:has_subject_relationship_context
- SNOMED:has_surgical_approach
- SNOMED:has_technique
- SNOMED:has_temporal_context
- SNOMED:has_time_aspect
- SNOMED:has_units
- UMLS:has_structural_class
- UMLS:has_supported_concept_property
- UMLS:has_supported_concept_relationship
- UMLS:may_be_qualified_by
rank: 1000
domain: entity
slot_uri: biolink:has_attribute
alias: has_attribute
owner: entity
domain_of:
- entity
- attribute
- named thing
- organism taxon
- study result
- relative frequency analysis result
- information content entity
- dataset
- physical entity
- activity
- procedure
- material sample
- biological entity
- gene
- genome
range: attribute
multivalued: true
deprecated:
name: deprecated
definition_uri: https://w3id.org/biolink/vocab/deprecated
description: A boolean flag indicating that an entity is no longer considered
current or valid.
from_schema: https://w3id.org/brain-bican/bke-taxonomy
exact_mappings:
- oboInOwl:ObsoleteClass
rank: 1000
slot_uri: biolink:deprecated
owner: entity
domain_of:
- entity
- attribute
- named thing
- organism taxon
- study result
- relative frequency analysis result
- information content entity
- dataset
- physical entity
- activity
- procedure
- material sample
- biological entity
- gene
- genome
range: boolean
class_uri: biolink:Entity