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Class: Donor

A person or organism that is the source of a biological sample for scientific study. Many biological samples are generated from a single donor.

URI: bican:Donor

classDiagram class Donor click Donor href "../Donor" ThingWithTaxon <|-- Donor click ThingWithTaxon href "../ThingWithTaxon" ProvEntity <|-- Donor click ProvEntity href "../ProvEntity" PhysicalEntity <|-- Donor click PhysicalEntity href "../PhysicalEntity" Donor : age_at_death_description Donor : age_at_death_reference_point Donor --> "0..1" age_at_death_reference_point : age_at_death_reference_point click age_at_death_reference_point href "../age_at_death_reference_point" Donor : age_at_death_unit Donor --> "0..1" age_at_death_unit : age_at_death_unit click age_at_death_unit href "../age_at_death_unit" Donor : age_at_death_value Donor : biological_sex Donor --> "0..1" Sex : biological_sex click Sex href "../Sex" Donor : category Donor : deprecated Donor : description Donor : equivalent_identifiers Donor : full_name Donor : has_attribute Donor --> "*" Attribute : has_attribute click Attribute href "../Attribute" Donor : id Donor : in_taxon Donor --> "*" OrganismTaxon : in_taxon click OrganismTaxon href "../OrganismTaxon" Donor : in_taxon_label Donor : information_content Donor : iri Donor : name Donor : named_thing_category Donor : provided_by Donor : species Donor : synonym Donor : type Donor : was_derived_from Donor --> "0..1" ProvEntity : was_derived_from click ProvEntity href "../ProvEntity" Donor : was_generated_by Donor --> "0..1" ProvActivity : was_generated_by click ProvActivity href "../ProvActivity" Donor : xref

Inheritance

Slots

Name Cardinality and Range Description Inheritance
name 0..1
LabelType		 Name of person or organism that is the source of a biological sample for scie... direct
biological_sex 0..1
Sex		 Biological sex of donor at birth direct
age_at_death_description 0..1
String		 Text description of the age of death following typical scientific convention ... direct
age_at_death_reference_point 0..1
age_at_death_reference_point		 The reference point for an age interval; for example, birth or conception direct
age_at_death_unit 0..1
age_at_death_unit		 The unit used for representing the donor age from the reference point direct
age_at_death_value 0..1
Float		 The value representing the donor age from the reference point direct
species 0..1
String		 Species of donor direct
in_taxon *
OrganismTaxon		 connects an entity to its taxonomic classification ThingWithTaxon
in_taxon_label 0..1
LabelType		 The human readable scientific name for the taxon of the entity ThingWithTaxon
was_derived_from 0..1
ProvEntity		 A derivation is a transformation of an entity into another, an update of an e... ProvEntity
was_generated_by 0..1
ProvActivity		 Generation is the completion of production of a new entity by an activity ProvEntity
id 1
String		 A unique identifier for an entity PhysicalEntity, Entity, NamedThing
iri 0..1
IriType		 An IRI for an entity PhysicalEntity, Entity, NamedThing
type *
String		 PhysicalEntity, Entity, NamedThing
description 0..1
NarrativeText		 a human-readable description of an entity PhysicalEntity, Entity, NamedThing
has_attribute *
Attribute		 connects any entity to an attribute PhysicalEntity, Entity, NamedThing
deprecated 0..1
Boolean		 A boolean flag indicating that an entity is no longer considered current or v... PhysicalEntity, Entity, NamedThing
provided_by *
String		 The value in this node property represents the knowledge provider that create... PhysicalEntity, NamedThing
xref *
Uriorcurie		 A database cross reference or alternative identifier for a NamedThing or edge... PhysicalEntity, NamedThing
full_name 0..1
LabelType		 a long-form human readable name for a thing PhysicalEntity, NamedThing
synonym *
LabelType		 Alternate human-readable names for a thing PhysicalEntity, NamedThing
information_content 0..1
Float		 Information content (IC) value for a term, primarily from Automats PhysicalEntity, NamedThing
equivalent_identifiers *
Uriorcurie		 A set of identifiers that are considered equivalent to the primary identifier... PhysicalEntity, NamedThing
named_thing_category 1..*
Uriorcurie		 Name of the high level ontology class in which this entity is categorized PhysicalEntity, NamedThing
category 1..*
Uriorcurie		 Name of the high level ontology class in which this entity is categorized Entity

Usages

used by used in type used
BrainSlab was_derived_from any_of[range] Donor
TissueSample was_derived_from range Donor

Identifier and Mapping Information

Schema Source

  • from schema: https://identifiers.org/brain-bican/library-generation-schema

Mappings

Mapping Type Mapped Value
self bican:Donor
native bican:Donor
exact NIMP:Donor

LinkML Source

Direct

name: Donor
description: A person or organism that is the source of a biological sample for scientific
  study.  Many biological samples are generated from a single donor.
from_schema: https://identifiers.org/brain-bican/library-generation-schema
exact_mappings:
- NIMP:Donor
is_a: physical entity
mixins:
- thing with taxon
- ProvEntity
slots:
- name
slot_usage:
  name:
    name: name
    local_names:
      NIMP:
        local_name_source: NIMP
        local_name_value: donor_local_id
    description: Name of person or organism that is the source of a biological sample
      for scientific study.  Many biological samples are generated from a single donor.
    from_schema: bican_biolink
attributes:
  biological_sex:
    name: biological_sex
    local_names:
      NIMP:
        local_name_source: NIMP
        local_name_value: sex
    description: Biological sex of donor at birth
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    exact_mappings:
    - NIMP:PD-LXUBTM45
    rank: 1000
    slot_uri: bican:632d3d3f-f85b-4efc-a1ab-010fe417ae81
    domain_of:
    - Donor
    range: sex
  age_at_death_description:
    name: age_at_death_description
    local_names:
      NIMP:
        local_name_source: NIMP
        local_name_value: age_at_death_description
    description: 'Text description of the age of death following typical scientific
      convention for the species or developmental stage. For example: P56, E11.5'
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    exact_mappings:
    - NIMP:PD-ZJZJLE33
    rank: 1000
    slot_uri: bican:0630a265-4a63-48f4-8853-66b929002306
    domain_of:
    - Donor
  age_at_death_reference_point:
    name: age_at_death_reference_point
    local_names:
      NIMP:
        local_name_source: NIMP
        local_name_value: age_at_death_reference_point
    description: The reference point for an age interval; for example, birth or conception.
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    exact_mappings:
    - NIMP:PD-RARAGG39
    rank: 1000
    slot_uri: bican:3bed1f94-9d82-4ed7-afdf-79d896b24dbb
    domain_of:
    - Donor
    range: age_at_death_reference_point
  age_at_death_unit:
    name: age_at_death_unit
    local_names:
      NIMP:
        local_name_source: NIMP
        local_name_value: age_at_death_unit
    description: The unit used for representing the donor age from the reference point.
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    exact_mappings:
    - NIMP:PD-AVAVEV39
    rank: 1000
    slot_uri: bican:b5436e99-f0a7-4c30-825d-56b88ee2ac1d
    domain_of:
    - Donor
    range: age_at_death_unit
  age_at_death_value:
    name: age_at_death_value
    local_names:
      NIMP:
        local_name_source: NIMP
        local_name_value: age_at_death
    description: The value representing the donor age from the reference point.
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    exact_mappings:
    - NIMP:PD-FTFTCP24
    rank: 1000
    slot_uri: bican:57e24d3c-c9c7-4ef3-9809-a35802d563ec
    domain_of:
    - Donor
    range: float
  species:
    name: species
    local_names:
      NIMP:
        local_name_source: NIMP
        local_name_value: donor_species
    description: Species of donor.
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    rank: 1000
    slot_uri: bican:6837cb02-6bd7-4fb8-838c-9062ead96ba4
    domain_of:
    - Donor

Induced

name: Donor
description: A person or organism that is the source of a biological sample for scientific
  study.  Many biological samples are generated from a single donor.
from_schema: https://identifiers.org/brain-bican/library-generation-schema
exact_mappings:
- NIMP:Donor
is_a: physical entity
mixins:
- thing with taxon
- ProvEntity
slot_usage:
  name:
    name: name
    local_names:
      NIMP:
        local_name_source: NIMP
        local_name_value: donor_local_id
    description: Name of person or organism that is the source of a biological sample
      for scientific study.  Many biological samples are generated from a single donor.
    from_schema: bican_biolink
attributes:
  biological_sex:
    name: biological_sex
    local_names:
      NIMP:
        local_name_source: NIMP
        local_name_value: sex
    description: Biological sex of donor at birth
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    exact_mappings:
    - NIMP:PD-LXUBTM45
    rank: 1000
    slot_uri: bican:632d3d3f-f85b-4efc-a1ab-010fe417ae81
    alias: biological_sex
    owner: Donor
    domain_of:
    - Donor
    range: sex
  age_at_death_description:
    name: age_at_death_description
    local_names:
      NIMP:
        local_name_source: NIMP
        local_name_value: age_at_death_description
    description: 'Text description of the age of death following typical scientific
      convention for the species or developmental stage. For example: P56, E11.5'
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    exact_mappings:
    - NIMP:PD-ZJZJLE33
    rank: 1000
    slot_uri: bican:0630a265-4a63-48f4-8853-66b929002306
    alias: age_at_death_description
    owner: Donor
    domain_of:
    - Donor
    range: string
  age_at_death_reference_point:
    name: age_at_death_reference_point
    local_names:
      NIMP:
        local_name_source: NIMP
        local_name_value: age_at_death_reference_point
    description: The reference point for an age interval; for example, birth or conception.
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    exact_mappings:
    - NIMP:PD-RARAGG39
    rank: 1000
    slot_uri: bican:3bed1f94-9d82-4ed7-afdf-79d896b24dbb
    alias: age_at_death_reference_point
    owner: Donor
    domain_of:
    - Donor
    range: age_at_death_reference_point
  age_at_death_unit:
    name: age_at_death_unit
    local_names:
      NIMP:
        local_name_source: NIMP
        local_name_value: age_at_death_unit
    description: The unit used for representing the donor age from the reference point.
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    exact_mappings:
    - NIMP:PD-AVAVEV39
    rank: 1000
    slot_uri: bican:b5436e99-f0a7-4c30-825d-56b88ee2ac1d
    alias: age_at_death_unit
    owner: Donor
    domain_of:
    - Donor
    range: age_at_death_unit
  age_at_death_value:
    name: age_at_death_value
    local_names:
      NIMP:
        local_name_source: NIMP
        local_name_value: age_at_death
    description: The value representing the donor age from the reference point.
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    exact_mappings:
    - NIMP:PD-FTFTCP24
    rank: 1000
    slot_uri: bican:57e24d3c-c9c7-4ef3-9809-a35802d563ec
    alias: age_at_death_value
    owner: Donor
    domain_of:
    - Donor
    range: float
  species:
    name: species
    local_names:
      NIMP:
        local_name_source: NIMP
        local_name_value: donor_species
    description: Species of donor.
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    rank: 1000
    slot_uri: bican:6837cb02-6bd7-4fb8-838c-9062ead96ba4
    alias: species
    owner: Donor
    domain_of:
    - Donor
    range: string
  name:
    name: name
    definition_uri: https://w3id.org/biolink/vocab/name
    local_names:
      NIMP:
        local_name_source: NIMP
        local_name_value: donor_local_id
    description: Name of person or organism that is the source of a biological sample
      for scientific study.  Many biological samples are generated from a single donor.
    in_subset:
    - translator_minimal
    - samples
    from_schema: bican_biolink
    aliases:
    - label
    - display name
    - title
    mappings:
    - rdfs:label
    exact_mappings:
    - gff3:Name
    - gpi:DB_Object_Name
    narrow_mappings:
    - dct:title
    - WIKIDATA_PROPERTY:P1476
    rank: 1000
    domain: entity
    slot_uri: rdfs:label
    alias: name
    owner: Donor
    domain_of:
    - attribute
    - entity
    - macromolecular machine mixin
    - Donor
    - BrainSlab
    - TissueSample
    - DissociatedCellSample
    - EnrichedCellSample
    - BarcodedCellSample
    - AmplifiedCdna
    - Library
    - LibraryAliquot
    - LibraryPool
    - DissectionRoiPolygon
    - named thing
    - organism taxon
    - study result
    - relative frequency analysis result
    - information content entity
    - dataset
    - physical entity
    - activity
    - procedure
    - material sample
    - biological entity
    - gene
    - genome
    range: label type
  in taxon:
    name: in taxon
    definition_uri: https://w3id.org/biolink/vocab/in_taxon
    annotations:
      canonical_predicate:
        tag: canonical_predicate
        value: true
    description: connects an entity to its taxonomic classification. Only certain
      kinds of entities can be taxonomically classified; see 'thing with taxon'
    in_subset:
    - translator_minimal
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    aliases:
    - instance of
    - is organism source of gene product
    - organism has gene
    - gene found in organism
    - gene product has organism source
    exact_mappings:
    - RO:0002162
    - WIKIDATA_PROPERTY:P703
    narrow_mappings:
    - RO:0002160
    rank: 1000
    is_a: related to at instance level
    domain: thing with taxon
    slot_uri: biolink:in_taxon
    inherited: true
    alias: in_taxon
    owner: Donor
    domain_of:
    - thing with taxon
    - biological entity
    - gene
    - genome
    range: organism taxon
    multivalued: true
  in taxon label:
    name: in taxon label
    definition_uri: https://w3id.org/biolink/vocab/in_taxon_label
    annotations:
      denormalized:
        tag: denormalized
        value: true
    description: The human readable scientific name for the taxon of the entity.
    in_subset:
    - translator_minimal
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    exact_mappings:
    - WIKIDATA_PROPERTY:P225
    rank: 1000
    is_a: node property
    domain: thing with taxon
    slot_uri: biolink:in_taxon_label
    alias: in_taxon_label
    owner: Donor
    domain_of:
    - thing with taxon
    - biological entity
    - gene
    - genome
    range: label type
  was_derived_from:
    name: was_derived_from
    description: A derivation is a transformation of an entity into another, an update
      of an entity resulting in a new one, or the construction of a new entity based
      on a pre-existing entity.
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    rank: 1000
    slot_uri: prov:wasDerivedFrom
    alias: was_derived_from
    owner: Donor
    domain_of:
    - BrainSlab
    - TissueSample
    - DissociatedCellSample
    - EnrichedCellSample
    - BarcodedCellSample
    - AmplifiedCdna
    - Library
    - LibraryAliquot
    - LibraryPool
    - DigitalAsset
    - ProvEntity
    range: ProvEntity
  was_generated_by:
    name: was_generated_by
    description: Generation is the completion of production of a new entity by an
      activity. This entity did not exist before generation and becomes available
      for usage after this generation.
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    rank: 1000
    slot_uri: prov:wasGeneratedBy
    alias: was_generated_by
    owner: Donor
    domain_of:
    - TissueSample
    - DissociatedCellSample
    - EnrichedCellSample
    - BarcodedCellSample
    - AmplifiedCdna
    - Library
    - LibraryPool
    - DissectionRoiPolygon
    - ProvEntity
    range: ProvActivity
  id:
    name: id
    definition_uri: https://w3id.org/biolink/vocab/id
    description: A unique identifier for an entity. Must be either a CURIE shorthand
      for a URI or a complete URI
    in_subset:
    - translator_minimal
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    exact_mappings:
    - AGRKB:primaryId
    - gff3:ID
    - gpi:DB_Object_ID
    rank: 1000
    domain: entity
    slot_uri: biolink:id
    identifier: true
    alias: id
    owner: Donor
    domain_of:
    - ontology class
    - entity
    - attribute
    - named thing
    - taxonomic rank
    - organism taxon
    - study result
    - relative frequency analysis result
    - information content entity
    - dataset
    - physical entity
    - activity
    - procedure
    - material sample
    - biological entity
    - gene
    - genome
    range: string
    required: true
  iri:
    name: iri
    definition_uri: https://w3id.org/biolink/vocab/iri
    description: An IRI for an entity. This is determined by the id using expansion
      rules.
    in_subset:
    - translator_minimal
    - samples
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    exact_mappings:
    - WIKIDATA_PROPERTY:P854
    rank: 1000
    slot_uri: biolink:iri
    alias: iri
    owner: Donor
    domain_of:
    - attribute
    - entity
    - named thing
    - organism taxon
    - study result
    - relative frequency analysis result
    - information content entity
    - dataset
    - physical entity
    - activity
    - procedure
    - material sample
    - biological entity
    - gene
    - genome
    range: iri type
  type:
    name: type
    definition_uri: https://w3id.org/biolink/vocab/type
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    mappings:
    - rdf:type
    exact_mappings:
    - gff3:type
    - gpi:DB_Object_Type
    rank: 1000
    domain: entity
    slot_uri: rdf:type
    alias: type
    owner: Donor
    domain_of:
    - entity
    - attribute
    - named thing
    - organism taxon
    - study result
    - relative frequency analysis result
    - information content entity
    - dataset
    - physical entity
    - activity
    - procedure
    - material sample
    - biological entity
    - gene
    - genome
    range: string
    multivalued: true
  description:
    name: description
    definition_uri: https://w3id.org/biolink/vocab/description
    description: a human-readable description of an entity
    in_subset:
    - translator_minimal
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    aliases:
    - definition
    mappings:
    - dct:description
    exact_mappings:
    - IAO:0000115
    - skos:definitions
    narrow_mappings:
    - gff3:Description
    rank: 1000
    slot_uri: dct:description
    alias: description
    owner: Donor
    domain_of:
    - entity
    - attribute
    - named thing
    - organism taxon
    - study result
    - relative frequency analysis result
    - information content entity
    - dataset
    - physical entity
    - activity
    - procedure
    - material sample
    - biological entity
    - gene
    - genome
    range: narrative text
  has attribute:
    name: has attribute
    definition_uri: https://w3id.org/biolink/vocab/has_attribute
    description: connects any entity to an attribute
    in_subset:
    - samples
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    exact_mappings:
    - SIO:000008
    close_mappings:
    - OBI:0001927
    narrow_mappings:
    - OBAN:association_has_subject_property
    - OBAN:association_has_object_property
    - CPT:has_possibly_included_panel_element
    - DRUGBANK:category
    - EFO:is_executed_in
    - HANCESTRO:0301
    - LOINC:has_action_guidance
    - LOINC:has_adjustment
    - LOINC:has_aggregation_view
    - LOINC:has_approach_guidance
    - LOINC:has_divisor
    - LOINC:has_exam
    - LOINC:has_method
    - LOINC:has_modality_subtype
    - LOINC:has_object_guidance
    - LOINC:has_scale
    - LOINC:has_suffix
    - LOINC:has_time_aspect
    - LOINC:has_time_modifier
    - LOINC:has_timing_of
    - NCIT:R88
    - NCIT:eo_disease_has_property_or_attribute
    - NCIT:has_data_element
    - NCIT:has_pharmaceutical_administration_method
    - NCIT:has_pharmaceutical_basic_dose_form
    - NCIT:has_pharmaceutical_intended_site
    - NCIT:has_pharmaceutical_release_characteristics
    - NCIT:has_pharmaceutical_state_of_matter
    - NCIT:has_pharmaceutical_transformation
    - NCIT:is_qualified_by
    - NCIT:qualifier_applies_to
    - NCIT:role_has_domain
    - NCIT:role_has_range
    - INO:0000154
    - HANCESTRO:0308
    - orphanet:C016
    - orphanet:C017
    - RO:0000053
    - RO:0000086
    - RO:0000087
    - SNOMED:has_access
    - SNOMED:has_clinical_course
    - SNOMED:has_count_of_base_of_active_ingredient
    - SNOMED:has_dose_form_administration_method
    - SNOMED:has_dose_form_release_characteristic
    - SNOMED:has_dose_form_transformation
    - SNOMED:has_finding_context
    - SNOMED:has_finding_informer
    - SNOMED:has_inherent_attribute
    - SNOMED:has_intent
    - SNOMED:has_interpretation
    - SNOMED:has_laterality
    - SNOMED:has_measurement_method
    - SNOMED:has_method
    - SNOMED:has_priority
    - SNOMED:has_procedure_context
    - SNOMED:has_process_duration
    - SNOMED:has_property
    - SNOMED:has_revision_status
    - SNOMED:has_scale_type
    - SNOMED:has_severity
    - SNOMED:has_specimen
    - SNOMED:has_state_of_matter
    - SNOMED:has_subject_relationship_context
    - SNOMED:has_surgical_approach
    - SNOMED:has_technique
    - SNOMED:has_temporal_context
    - SNOMED:has_time_aspect
    - SNOMED:has_units
    - UMLS:has_structural_class
    - UMLS:has_supported_concept_property
    - UMLS:has_supported_concept_relationship
    - UMLS:may_be_qualified_by
    rank: 1000
    domain: entity
    slot_uri: biolink:has_attribute
    alias: has_attribute
    owner: Donor
    domain_of:
    - entity
    - attribute
    - named thing
    - organism taxon
    - study result
    - relative frequency analysis result
    - information content entity
    - dataset
    - physical entity
    - activity
    - procedure
    - material sample
    - biological entity
    - gene
    - genome
    range: attribute
    multivalued: true
  deprecated:
    name: deprecated
    definition_uri: https://w3id.org/biolink/vocab/deprecated
    description: A boolean flag indicating that an entity is no longer considered
      current or valid.
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    exact_mappings:
    - oboInOwl:ObsoleteClass
    rank: 1000
    slot_uri: biolink:deprecated
    alias: deprecated
    owner: Donor
    domain_of:
    - entity
    - attribute
    - named thing
    - organism taxon
    - study result
    - relative frequency analysis result
    - information content entity
    - dataset
    - physical entity
    - activity
    - procedure
    - material sample
    - biological entity
    - gene
    - genome
    range: boolean
  provided by:
    name: provided by
    definition_uri: https://w3id.org/biolink/vocab/provided_by
    description: The value in this node property represents the knowledge provider
      that created or assembled the node and all of its attributes.  Used internally
      to represent how a particular node made its way into a knowledge provider or
      graph.
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    rank: 1000
    is_a: node property
    domain: named thing
    slot_uri: biolink:provided_by
    alias: provided_by
    owner: Donor
    domain_of:
    - named thing
    - attribute
    - organism taxon
    - study result
    - relative frequency analysis result
    - information content entity
    - dataset
    - physical entity
    - activity
    - procedure
    - material sample
    - biological entity
    - gene
    - genome
    range: string
    multivalued: true
  xref:
    name: xref
    definition_uri: https://w3id.org/biolink/vocab/xref
    description: A database cross reference or alternative identifier for a NamedThing
      or edge between two NamedThings.  This property should point to a database record
      or webpage that supports the existence of the edge, or gives more detail about
      the edge. This property can be used on a node or edge to provide multiple URIs
      or CURIE cross references.
    in_subset:
    - translator_minimal
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    aliases:
    - dbxref
    - Dbxref
    - DbXref
    - record_url
    - source_record_urls
    narrow_mappings:
    - gff3:Dbxref
    - gpi:DB_Xrefs
    rank: 1000
    domain: named thing
    slot_uri: biolink:xref
    alias: xref
    owner: Donor
    domain_of:
    - named thing
    - gene
    - attribute
    - organism taxon
    - study result
    - relative frequency analysis result
    - information content entity
    - dataset
    - physical entity
    - activity
    - procedure
    - material sample
    - biological entity
    - genome
    range: uriorcurie
    multivalued: true
  full name:
    name: full name
    definition_uri: https://w3id.org/biolink/vocab/full_name
    description: a long-form human readable name for a thing
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    rank: 1000
    is_a: node property
    domain: named thing
    slot_uri: biolink:full_name
    alias: full_name
    owner: Donor
    domain_of:
    - named thing
    - attribute
    - organism taxon
    - study result
    - relative frequency analysis result
    - information content entity
    - dataset
    - physical entity
    - activity
    - procedure
    - material sample
    - biological entity
    - gene
    - genome
    range: label type
  synonym:
    name: synonym
    definition_uri: https://w3id.org/biolink/vocab/synonym
    description: Alternate human-readable names for a thing
    in_subset:
    - translator_minimal
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    aliases:
    - alias
    narrow_mappings:
    - skos:altLabel
    - gff3:Alias
    - AGRKB:synonyms
    - gpi:DB_Object_Synonyms
    - HANCESTRO:0330
    - IAO:0000136
    - RXNORM:has_tradename
    rank: 1000
    is_a: node property
    domain: named thing
    slot_uri: biolink:synonym
    alias: synonym
    owner: Donor
    domain_of:
    - named thing
    - attribute
    - organism taxon
    - study result
    - relative frequency analysis result
    - information content entity
    - dataset
    - physical entity
    - activity
    - procedure
    - material sample
    - biological entity
    - gene
    - genome
    range: label type
    multivalued: true
  information content:
    name: information content
    definition_uri: https://w3id.org/biolink/vocab/information_content
    description: Information content (IC) value for a term, primarily from Automats.
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    rank: 1000
    is_a: node property
    domain: named thing
    slot_uri: biolink:information_content
    alias: information_content
    owner: Donor
    domain_of:
    - named thing
    - attribute
    - organism taxon
    - study result
    - relative frequency analysis result
    - information content entity
    - dataset
    - physical entity
    - activity
    - procedure
    - material sample
    - biological entity
    - gene
    - genome
    range: float
  equivalent identifiers:
    name: equivalent identifiers
    definition_uri: https://w3id.org/biolink/vocab/equivalent_identifiers
    description: A set of identifiers that are considered equivalent to the primary
      identifier of the entity. This attribute is used to represent a collection of
      identifiers that are considered equivalent to the primary identifier of an entity.
      These equivalent identifiers may come from different databases, ontologies,
      or naming conventions, but they all refer to the same underlying concept or
      entity. This attribute is particularly useful in data integration and interoperability
      scenarios, where it is important to recognize and link different representations
      of the same entity across various sources.
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    see_also:
    - biolink:xref
    - biolink:synonyms
    rank: 1000
    is_a: node property
    domain: named thing
    slot_uri: biolink:equivalent_identifiers
    alias: equivalent_identifiers
    owner: Donor
    domain_of:
    - named thing
    - attribute
    - organism taxon
    - study result
    - relative frequency analysis result
    - information content entity
    - dataset
    - physical entity
    - activity
    - procedure
    - material sample
    - biological entity
    - gene
    - genome
    range: uriorcurie
    multivalued: true
  named thing_category:
    name: named thing_category
    definition_uri: https://w3id.org/biolink/vocab/category
    description: Name of the high level ontology class in which this entity is categorized.
      Corresponds to the label for the biolink entity type class. In a neo4j database
      this MAY correspond to the neo4j label tag. In an RDF database it should be
      a biolink model class URI. This field is multi-valued. It should include values
      for ancestors of the biolink class; for example, a protein such as Shh would
      have category values `biolink:Protein`, `biolink:GeneProduct`, `biolink:MolecularEntity`.
      In an RDF database, nodes will typically have an rdf:type triples. This can
      be to the most specific biolink class, or potentially to a class more specific
      than something in biolink. For example, a sequence feature `f` may have a rdf:type
      assertion to a SO class such as TF_binding_site, which is more specific than
      anything in biolink. Here we would have categories {biolink:GenomicEntity, biolink:MolecularEntity,
      biolink:NamedThing}
    in_subset:
    - translator_minimal
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    rank: 1000
    is_a: category
    domain: named thing
    slot_uri: biolink:category
    designates_type: true
    alias: category
    owner: Donor
    domain_of:
    - named thing
    - attribute
    - organism taxon
    - study result
    - relative frequency analysis result
    - information content entity
    - dataset
    - physical entity
    - activity
    - procedure
    - material sample
    - biological entity
    - gene
    - genome
    is_class_field: true
    is_usage_slot: true
    usage_slot_name: category
    range: uriorcurie
    required: true
    multivalued: true
  category:
    name: category
    definition_uri: https://w3id.org/biolink/vocab/category
    description: Name of the high level ontology class in which this entity is categorized.
      Corresponds to the label for the biolink entity type class. In a neo4j database
      this MAY correspond to the neo4j label tag. In an RDF database it should be
      a biolink model class URI. This field is multi-valued. It should include values
      for ancestors of the biolink class; for example, a protein such as Shh would
      have category values `biolink:Protein`, `biolink:GeneProduct`, `biolink:MolecularEntity`.
      In an RDF database, nodes will typically have an rdf:type triples. This can
      be to the most specific biolink class, or potentially to a class more specific
      than something in biolink. For example, a sequence feature `f` may have a rdf:type
      assertion to a SO class such as TF_binding_site, which is more specific than
      anything in biolink. Here we would have categories {biolink:GenomicEntity, biolink:MolecularEntity,
      biolink:NamedThing}
    in_subset:
    - translator_minimal
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    rank: 1000
    is_a: type
    domain: entity
    slot_uri: biolink:category
    designates_type: true
    alias: category
    owner: Donor
    domain_of:
    - entity
    is_class_field: true
    range: uriorcurie
    required: true
    multivalued: true