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Class: CellTypeSet

A grouping of cell type taxons. The grouping may represent a specific taxonomic level (rank) or cell type neighborhood.

URI: bican:CellTypeSet

classDiagram class CellTypeSet click CellTypeSet href "../CellTypeSet" ProvEntity <|-- CellTypeSet click ProvEntity href "../ProvEntity" NamedThing <|-- CellTypeSet click NamedThing href "../NamedThing" CellTypeSet : accession_id CellTypeSet : category CellTypeSet : cell_type_set_type CellTypeSet --> "0..1" CellTypeSetType : cell_type_set_type click CellTypeSetType href "../CellTypeSetType" CellTypeSet : contains_taxon CellTypeSet --> "*" CellTypeTaxon : contains_taxon click CellTypeTaxon href "../CellTypeTaxon" CellTypeSet : deprecated CellTypeSet : description CellTypeSet : equivalent_identifiers CellTypeSet : full_name CellTypeSet : has_attribute CellTypeSet --> "*" Attribute : has_attribute click Attribute href "../Attribute" CellTypeSet : has_abbreviation CellTypeSet --> "*" Abbreviation : has_abbreviation click Abbreviation href "../Abbreviation" CellTypeSet : has_parent CellTypeSet --> "0..1" CellTypeSet : has_parent click CellTypeSet href "../CellTypeSet" CellTypeSet : id CellTypeSet : information_content CellTypeSet : iri CellTypeSet : name CellTypeSet : named_thing_category CellTypeSet : order CellTypeSet : part_of_taxonomy CellTypeSet --> "0..1" CellTypeTaxonomy : part_of_taxonomy click CellTypeTaxonomy href "../CellTypeTaxonomy" CellTypeSet : provided_by CellTypeSet : synonym CellTypeSet : type CellTypeSet : was_derived_from CellTypeSet --> "0..1" ProvEntity : was_derived_from click ProvEntity href "../ProvEntity" CellTypeSet : was_generated_by CellTypeSet --> "0..1" ProvActivity : was_generated_by click ProvActivity href "../ProvActivity" CellTypeSet : xref

Inheritance

Slots

Name Cardinality and Range Description Inheritance
part_of_taxonomy 0..1
CellTypeTaxonomy		 The cell types taxonomy for which the cell type set is part of direct
has_parent 0..1
CellTypeSet		 When the cell type set represents a taxonomic level, the parent is the next h... direct
has_abbreviation *
Abbreviation		 One of many abbreviation that are part of the cell type set name direct
id 1
String		 ( database GUID) direct
accession_id 0..1
String		 A provider assigned accession identifier for the cell type set direct
name 0..1
String		 Name of the cell type set taxonomy direct
description 0..1
String		 Description of the cell type set direct
order 0..1
Integer		 The priority or display order of the cell type set among all other sets of th... direct
xref *
Uriorcurie		 A database cross reference or alternative identifier for a NamedThing or edge... direct
contains_taxon *
CellTypeTaxon		 One of potentially many cell types taxons which together defines the cell typ... direct
cell_type_set_type 0..1
CellTypeSetType		 A tag denoting the type or purpose of the cell type set direct
was_derived_from 0..1
ProvEntity		 A derivation is a transformation of an entity into another, an update of an e... ProvEntity
was_generated_by 0..1
ProvActivity		 Generation is the completion of production of a new entity by an activity ProvEntity
iri 0..1
IriType		 An IRI for an entity NamedThing, Entity
type *
String		 NamedThing, Entity
has_attribute *
Attribute		 connects any entity to an attribute NamedThing, Entity
deprecated 0..1
Boolean		 A boolean flag indicating that an entity is no longer considered current or v... NamedThing, Entity
provided_by *
String		 The value in this node property represents the knowledge provider that create... NamedThing
full_name 0..1
LabelType		 a long-form human readable name for a thing NamedThing
synonym *
LabelType		 Alternate human-readable names for a thing NamedThing
information_content 0..1
Float		 Information content (IC) value for a term, primarily from Automats NamedThing
equivalent_identifiers *
Uriorcurie		 A set of identifiers that are considered equivalent to the primary identifier... NamedThing
named_thing_category 1..*
Uriorcurie		 Name of the high level ontology class in which this entity is categorized NamedThing
category 1..*
Uriorcurie		 Name of the high level ontology class in which this entity is categorized Entity

Usages

used by used in type used
CellTypeSet has_parent range CellTypeSet
DisplayColor is_color_for_set range CellTypeSet

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/brain-bican/bke-taxonomy

Mappings

Mapping Type Mapped Value
self bican:CellTypeSet
native bican:CellTypeSet

LinkML Source

Direct

name: CellTypeSet
description: A grouping of cell type taxons. The grouping may represent a specific
  taxonomic level (rank) or cell type neighborhood.
from_schema: https://w3id.org/brain-bican/bke-taxonomy
is_a: named thing
mixins:
- ProvEntity
slots:
- part_of_taxonomy
- has_parent
- has_abbreviation
- id
- accession_id
- name
- description
- order
- xref
slot_usage:
  part_of_taxonomy:
    name: part_of_taxonomy
    description: The cell types taxonomy for which the cell type set is part of.
    range: CellTypeTaxonomy
  has_parent:
    name: has_parent
    description: When the cell type set represents a taxonomic level, the parent is
      the next higher level in the heirarchy.
    range: CellTypeSet
  has_abbreviation:
    name: has_abbreviation
    description: One of many abbreviation that are part of the cell type set name.
    range: Abbreviation
    multivalued: true
  id:
    name: id
    description: ( database GUID)
    from_schema: bican_biolink
    range: string
  accession_id:
    name: accession_id
    description: A provider assigned accession identifier for the cell type set.
    examples:
    - value: CCN20230722_CLAS
    range: string
  name:
    name: name
    description: Name of the cell type set taxonomy.
    examples:
    - value: class
    from_schema: bican_biolink
    range: string
  description:
    name: description
    description: Description of the cell type set.
    examples:
    - value: The top level of cell type definition in the mouse whole brain taxonomy.
        It is primarily determined by broad brain region and neurotransmitter type.
        All cells within a subclass belong to the same class. Class provides a broader
        categorization of cell types.
    from_schema: bican_biolink
    range: string
  order:
    name: order
    local_names:
      allen:
        local_name_source: allen
        local_name_value: order_idx
    description: The priority or display order of the cell type set among all other
      sets of the same type.
    examples:
    - value: '1'
    range: integer
    minimum_value: '0.0'
  xref:
    name: xref
    local_names:
      allen:
        local_name_source: allen
        local_name_value: unique_id
    from_schema: bican_biolink
attributes:
  contains_taxon:
    name: contains_taxon
    description: One of potentially many cell types taxons which together defines
      the cell type set.
    from_schema: https://w3id.org/brain-bican/bke-taxonomy
    rank: 1000
    domain_of:
    - CellTypeSet
    range: CellTypeTaxon
    multivalued: true
  cell_type_set_type:
    name: cell_type_set_type
    local_names:
      allen:
        local_name_source: allen
        local_name_value: type
    description: A tag denoting the type or purpose of the cell type set.
    examples:
    - value: taxonomic_level
    from_schema: https://w3id.org/brain-bican/bke-taxonomy
    rank: 1000
    domain_of:
    - CellTypeSet
    range: CellTypeSetType

Induced

name: CellTypeSet
description: A grouping of cell type taxons. The grouping may represent a specific
  taxonomic level (rank) or cell type neighborhood.
from_schema: https://w3id.org/brain-bican/bke-taxonomy
is_a: named thing
mixins:
- ProvEntity
slot_usage:
  part_of_taxonomy:
    name: part_of_taxonomy
    description: The cell types taxonomy for which the cell type set is part of.
    range: CellTypeTaxonomy
  has_parent:
    name: has_parent
    description: When the cell type set represents a taxonomic level, the parent is
      the next higher level in the heirarchy.
    range: CellTypeSet
  has_abbreviation:
    name: has_abbreviation
    description: One of many abbreviation that are part of the cell type set name.
    range: Abbreviation
    multivalued: true
  id:
    name: id
    description: ( database GUID)
    from_schema: bican_biolink
    range: string
  accession_id:
    name: accession_id
    description: A provider assigned accession identifier for the cell type set.
    examples:
    - value: CCN20230722_CLAS
    range: string
  name:
    name: name
    description: Name of the cell type set taxonomy.
    examples:
    - value: class
    from_schema: bican_biolink
    range: string
  description:
    name: description
    description: Description of the cell type set.
    examples:
    - value: The top level of cell type definition in the mouse whole brain taxonomy.
        It is primarily determined by broad brain region and neurotransmitter type.
        All cells within a subclass belong to the same class. Class provides a broader
        categorization of cell types.
    from_schema: bican_biolink
    range: string
  order:
    name: order
    local_names:
      allen:
        local_name_source: allen
        local_name_value: order_idx
    description: The priority or display order of the cell type set among all other
      sets of the same type.
    examples:
    - value: '1'
    range: integer
    minimum_value: '0.0'
  xref:
    name: xref
    local_names:
      allen:
        local_name_source: allen
        local_name_value: unique_id
    from_schema: bican_biolink
attributes:
  contains_taxon:
    name: contains_taxon
    description: One of potentially many cell types taxons which together defines
      the cell type set.
    from_schema: https://w3id.org/brain-bican/bke-taxonomy
    rank: 1000
    alias: contains_taxon
    owner: CellTypeSet
    domain_of:
    - CellTypeSet
    range: CellTypeTaxon
    multivalued: true
  cell_type_set_type:
    name: cell_type_set_type
    local_names:
      allen:
        local_name_source: allen
        local_name_value: type
    description: A tag denoting the type or purpose of the cell type set.
    examples:
    - value: taxonomic_level
    from_schema: https://w3id.org/brain-bican/bke-taxonomy
    rank: 1000
    alias: cell_type_set_type
    owner: CellTypeSet
    domain_of:
    - CellTypeSet
    range: CellTypeSetType
  part_of_taxonomy:
    name: part_of_taxonomy
    description: The cell types taxonomy for which the cell type set is part of.
    from_schema: https://w3id.org/brain-bican/bke-taxonomy
    rank: 1000
    alias: part_of_taxonomy
    owner: CellTypeSet
    domain_of:
    - CellTypeSet
    - CellTypeTaxon
    range: CellTypeTaxonomy
  has_parent:
    name: has_parent
    description: When the cell type set represents a taxonomic level, the parent is
      the next higher level in the heirarchy.
    from_schema: https://w3id.org/brain-bican/bke-taxonomy
    rank: 1000
    alias: has_parent
    owner: CellTypeSet
    domain_of:
    - CellTypeSet
    - CellTypeTaxon
    range: CellTypeSet
  has_abbreviation:
    name: has_abbreviation
    description: One of many abbreviation that are part of the cell type set name.
    from_schema: https://w3id.org/brain-bican/bke-taxonomy
    rank: 1000
    alias: has_abbreviation
    owner: CellTypeSet
    domain_of:
    - CellTypeSet
    - CellTypeTaxon
    range: Abbreviation
    multivalued: true
  id:
    name: id
    definition_uri: https://w3id.org/biolink/vocab/id
    description: ( database GUID)
    in_subset:
    - translator_minimal
    from_schema: bican_biolink
    exact_mappings:
    - AGRKB:primaryId
    - gff3:ID
    - gpi:DB_Object_ID
    rank: 1000
    domain: entity
    slot_uri: biolink:id
    identifier: true
    alias: id
    owner: CellTypeSet
    domain_of:
    - ontology class
    - entity
    - CellTypeTaxonomy
    - CellTypeSet
    - CellTypeTaxon
    - ClusterSet
    - Cluster
    - Abbreviation
    - ColorPalette
    - DisplayColor
    - attribute
    - named thing
    - taxonomic rank
    - organism taxon
    - study result
    - relative frequency analysis result
    - information content entity
    - dataset
    - physical entity
    - activity
    - procedure
    - material sample
    - biological entity
    - gene
    - genome
    range: string
    required: true
  accession_id:
    name: accession_id
    description: A provider assigned accession identifier for the cell type set.
    examples:
    - value: CCN20230722_CLAS
    from_schema: https://w3id.org/brain-bican/bke-taxonomy
    rank: 1000
    alias: accession_id
    owner: CellTypeSet
    domain_of:
    - CellTypeTaxonomy
    - CellTypeSet
    - CellTypeTaxon
    - ClusterSet
    - Cluster
    range: string
  name:
    name: name
    definition_uri: https://w3id.org/biolink/vocab/name
    description: Name of the cell type set taxonomy.
    examples:
    - value: class
    in_subset:
    - translator_minimal
    - samples
    from_schema: bican_biolink
    aliases:
    - label
    - display name
    - title
    mappings:
    - rdfs:label
    exact_mappings:
    - gff3:Name
    - gpi:DB_Object_Name
    narrow_mappings:
    - dct:title
    - WIKIDATA_PROPERTY:P1476
    rank: 1000
    domain: entity
    slot_uri: rdfs:label
    alias: name
    owner: CellTypeSet
    domain_of:
    - attribute
    - entity
    - macromolecular machine mixin
    - CellTypeTaxonomy
    - CellTypeSet
    - CellTypeTaxon
    - ClusterSet
    - Cluster
    - ColorPalette
    - named thing
    - organism taxon
    - study result
    - relative frequency analysis result
    - information content entity
    - dataset
    - physical entity
    - activity
    - procedure
    - material sample
    - biological entity
    - gene
    - genome
    range: string
  description:
    name: description
    definition_uri: https://w3id.org/biolink/vocab/description
    description: Description of the cell type set.
    examples:
    - value: The top level of cell type definition in the mouse whole brain taxonomy.
        It is primarily determined by broad brain region and neurotransmitter type.
        All cells within a subclass belong to the same class. Class provides a broader
        categorization of cell types.
    in_subset:
    - translator_minimal
    from_schema: bican_biolink
    aliases:
    - definition
    mappings:
    - dct:description
    exact_mappings:
    - IAO:0000115
    - skos:definitions
    narrow_mappings:
    - gff3:Description
    rank: 1000
    slot_uri: dct:description
    alias: description
    owner: CellTypeSet
    domain_of:
    - entity
    - CellTypeTaxonomy
    - CellTypeSet
    - CellTypeTaxon
    - ClusterSet
    - ColorPalette
    - attribute
    - named thing
    - organism taxon
    - study result
    - relative frequency analysis result
    - information content entity
    - dataset
    - physical entity
    - activity
    - procedure
    - material sample
    - biological entity
    - gene
    - genome
    range: string
  order:
    name: order
    local_names:
      allen:
        local_name_source: allen
        local_name_value: order_idx
    description: The priority or display order of the cell type set among all other
      sets of the same type.
    examples:
    - value: '1'
    from_schema: https://w3id.org/brain-bican/bke-taxonomy
    rank: 1000
    alias: order
    owner: CellTypeSet
    domain_of:
    - CellTypeSet
    - CellTypeTaxon
    range: integer
    minimum_value: '0.0'
  xref:
    name: xref
    definition_uri: https://w3id.org/biolink/vocab/xref
    local_names:
      allen:
        local_name_source: allen
        local_name_value: unique_id
    description: A database cross reference or alternative identifier for a NamedThing
      or edge between two NamedThings.  This property should point to a database record
      or webpage that supports the existence of the edge, or gives more detail about
      the edge. This property can be used on a node or edge to provide multiple URIs
      or CURIE cross references.
    in_subset:
    - translator_minimal
    from_schema: bican_biolink
    aliases:
    - dbxref
    - Dbxref
    - DbXref
    - record_url
    - source_record_urls
    narrow_mappings:
    - gff3:Dbxref
    - gpi:DB_Xrefs
    rank: 1000
    domain: named thing
    slot_uri: biolink:xref
    alias: xref
    owner: CellTypeSet
    domain_of:
    - named thing
    - gene
    - CellTypeTaxonomy
    - CellTypeSet
    - CellTypeTaxon
    - ClusterSet
    - Cluster
    - ObservationMatrix
    - ObservationRow
    - Abbreviation
    - MatrixFile
    - ColorPalette
    - DisplayColor
    - attribute
    - organism taxon
    - study result
    - relative frequency analysis result
    - information content entity
    - dataset
    - physical entity
    - activity
    - procedure
    - material sample
    - biological entity
    - genome
    range: uriorcurie
    multivalued: true
  was_derived_from:
    name: was_derived_from
    description: A derivation is a transformation of an entity into another, an update
      of an entity resulting in a new one, or the construction of a new entity based
      on a pre-existing entity.
    from_schema: https://w3id.org/brain-bican/bke-taxonomy
    rank: 1000
    slot_uri: prov:wasDerivedFrom
    alias: was_derived_from
    owner: CellTypeSet
    domain_of:
    - CellTypeTaxonomy
    - ClusterSet
    - ObservationMatrix
    - ObservationRow
    - ProvEntity
    range: ProvEntity
  was_generated_by:
    name: was_generated_by
    description: Generation is the completion of production of a new entity by an
      activity. This entity did not exist before generation and becomes available
      for usage after this generation.
    from_schema: https://w3id.org/brain-bican/bke-taxonomy
    rank: 1000
    slot_uri: prov:wasGeneratedBy
    alias: was_generated_by
    owner: CellTypeSet
    domain_of:
    - CellTypeTaxonomy
    - ClusterSet
    - ObservationMatrix
    - ProvEntity
    range: ProvActivity
  iri:
    name: iri
    definition_uri: https://w3id.org/biolink/vocab/iri
    description: An IRI for an entity. This is determined by the id using expansion
      rules.
    in_subset:
    - translator_minimal
    - samples
    from_schema: https://w3id.org/brain-bican/bke-taxonomy
    exact_mappings:
    - WIKIDATA_PROPERTY:P854
    rank: 1000
    slot_uri: biolink:iri
    alias: iri
    owner: CellTypeSet
    domain_of:
    - attribute
    - entity
    - named thing
    - organism taxon
    - study result
    - relative frequency analysis result
    - information content entity
    - dataset
    - physical entity
    - activity
    - procedure
    - material sample
    - biological entity
    - gene
    - genome
    range: iri type
  type:
    name: type
    definition_uri: https://w3id.org/biolink/vocab/type
    from_schema: https://w3id.org/brain-bican/bke-taxonomy
    mappings:
    - rdf:type
    exact_mappings:
    - gff3:type
    - gpi:DB_Object_Type
    rank: 1000
    domain: entity
    slot_uri: rdf:type
    alias: type
    owner: CellTypeSet
    domain_of:
    - entity
    - attribute
    - named thing
    - organism taxon
    - study result
    - relative frequency analysis result
    - information content entity
    - dataset
    - physical entity
    - activity
    - procedure
    - material sample
    - biological entity
    - gene
    - genome
    range: string
    multivalued: true
  has attribute:
    name: has attribute
    definition_uri: https://w3id.org/biolink/vocab/has_attribute
    description: connects any entity to an attribute
    in_subset:
    - samples
    from_schema: https://w3id.org/brain-bican/bke-taxonomy
    exact_mappings:
    - SIO:000008
    close_mappings:
    - OBI:0001927
    narrow_mappings:
    - OBAN:association_has_subject_property
    - OBAN:association_has_object_property
    - CPT:has_possibly_included_panel_element
    - DRUGBANK:category
    - EFO:is_executed_in
    - HANCESTRO:0301
    - LOINC:has_action_guidance
    - LOINC:has_adjustment
    - LOINC:has_aggregation_view
    - LOINC:has_approach_guidance
    - LOINC:has_divisor
    - LOINC:has_exam
    - LOINC:has_method
    - LOINC:has_modality_subtype
    - LOINC:has_object_guidance
    - LOINC:has_scale
    - LOINC:has_suffix
    - LOINC:has_time_aspect
    - LOINC:has_time_modifier
    - LOINC:has_timing_of
    - NCIT:R88
    - NCIT:eo_disease_has_property_or_attribute
    - NCIT:has_data_element
    - NCIT:has_pharmaceutical_administration_method
    - NCIT:has_pharmaceutical_basic_dose_form
    - NCIT:has_pharmaceutical_intended_site
    - NCIT:has_pharmaceutical_release_characteristics
    - NCIT:has_pharmaceutical_state_of_matter
    - NCIT:has_pharmaceutical_transformation
    - NCIT:is_qualified_by
    - NCIT:qualifier_applies_to
    - NCIT:role_has_domain
    - NCIT:role_has_range
    - INO:0000154
    - HANCESTRO:0308
    - orphanet:C016
    - orphanet:C017
    - RO:0000053
    - RO:0000086
    - RO:0000087
    - SNOMED:has_access
    - SNOMED:has_clinical_course
    - SNOMED:has_count_of_base_of_active_ingredient
    - SNOMED:has_dose_form_administration_method
    - SNOMED:has_dose_form_release_characteristic
    - SNOMED:has_dose_form_transformation
    - SNOMED:has_finding_context
    - SNOMED:has_finding_informer
    - SNOMED:has_inherent_attribute
    - SNOMED:has_intent
    - SNOMED:has_interpretation
    - SNOMED:has_laterality
    - SNOMED:has_measurement_method
    - SNOMED:has_method
    - SNOMED:has_priority
    - SNOMED:has_procedure_context
    - SNOMED:has_process_duration
    - SNOMED:has_property
    - SNOMED:has_revision_status
    - SNOMED:has_scale_type
    - SNOMED:has_severity
    - SNOMED:has_specimen
    - SNOMED:has_state_of_matter
    - SNOMED:has_subject_relationship_context
    - SNOMED:has_surgical_approach
    - SNOMED:has_technique
    - SNOMED:has_temporal_context
    - SNOMED:has_time_aspect
    - SNOMED:has_units
    - UMLS:has_structural_class
    - UMLS:has_supported_concept_property
    - UMLS:has_supported_concept_relationship
    - UMLS:may_be_qualified_by
    rank: 1000
    domain: entity
    slot_uri: biolink:has_attribute
    alias: has_attribute
    owner: CellTypeSet
    domain_of:
    - entity
    - attribute
    - named thing
    - organism taxon
    - study result
    - relative frequency analysis result
    - information content entity
    - dataset
    - physical entity
    - activity
    - procedure
    - material sample
    - biological entity
    - gene
    - genome
    range: attribute
    multivalued: true
  deprecated:
    name: deprecated
    definition_uri: https://w3id.org/biolink/vocab/deprecated
    description: A boolean flag indicating that an entity is no longer considered
      current or valid.
    from_schema: https://w3id.org/brain-bican/bke-taxonomy
    exact_mappings:
    - oboInOwl:ObsoleteClass
    rank: 1000
    slot_uri: biolink:deprecated
    alias: deprecated
    owner: CellTypeSet
    domain_of:
    - entity
    - attribute
    - named thing
    - organism taxon
    - study result
    - relative frequency analysis result
    - information content entity
    - dataset
    - physical entity
    - activity
    - procedure
    - material sample
    - biological entity
    - gene
    - genome
    range: boolean
  provided by:
    name: provided by
    definition_uri: https://w3id.org/biolink/vocab/provided_by
    description: The value in this node property represents the knowledge provider
      that created or assembled the node and all of its attributes.  Used internally
      to represent how a particular node made its way into a knowledge provider or
      graph.
    from_schema: https://w3id.org/brain-bican/bke-taxonomy
    rank: 1000
    is_a: node property
    domain: named thing
    slot_uri: biolink:provided_by
    alias: provided_by
    owner: CellTypeSet
    domain_of:
    - named thing
    - attribute
    - organism taxon
    - study result
    - relative frequency analysis result
    - information content entity
    - dataset
    - physical entity
    - activity
    - procedure
    - material sample
    - biological entity
    - gene
    - genome
    range: string
    multivalued: true
  full name:
    name: full name
    definition_uri: https://w3id.org/biolink/vocab/full_name
    description: a long-form human readable name for a thing
    from_schema: https://w3id.org/brain-bican/bke-taxonomy
    rank: 1000
    is_a: node property
    domain: named thing
    slot_uri: biolink:full_name
    alias: full_name
    owner: CellTypeSet
    domain_of:
    - named thing
    - attribute
    - organism taxon
    - study result
    - relative frequency analysis result
    - information content entity
    - dataset
    - physical entity
    - activity
    - procedure
    - material sample
    - biological entity
    - gene
    - genome
    range: label type
  synonym:
    name: synonym
    definition_uri: https://w3id.org/biolink/vocab/synonym
    description: Alternate human-readable names for a thing
    in_subset:
    - translator_minimal
    from_schema: https://w3id.org/brain-bican/bke-taxonomy
    aliases:
    - alias
    narrow_mappings:
    - skos:altLabel
    - gff3:Alias
    - AGRKB:synonyms
    - gpi:DB_Object_Synonyms
    - HANCESTRO:0330
    - IAO:0000136
    - RXNORM:has_tradename
    rank: 1000
    is_a: node property
    domain: named thing
    slot_uri: biolink:synonym
    alias: synonym
    owner: CellTypeSet
    domain_of:
    - named thing
    - attribute
    - organism taxon
    - study result
    - relative frequency analysis result
    - information content entity
    - dataset
    - physical entity
    - activity
    - procedure
    - material sample
    - biological entity
    - gene
    - genome
    range: label type
    multivalued: true
  information content:
    name: information content
    definition_uri: https://w3id.org/biolink/vocab/information_content
    description: Information content (IC) value for a term, primarily from Automats.
    from_schema: https://w3id.org/brain-bican/bke-taxonomy
    rank: 1000
    is_a: node property
    domain: named thing
    slot_uri: biolink:information_content
    alias: information_content
    owner: CellTypeSet
    domain_of:
    - named thing
    - attribute
    - organism taxon
    - study result
    - relative frequency analysis result
    - information content entity
    - dataset
    - physical entity
    - activity
    - procedure
    - material sample
    - biological entity
    - gene
    - genome
    range: float
  equivalent identifiers:
    name: equivalent identifiers
    definition_uri: https://w3id.org/biolink/vocab/equivalent_identifiers
    description: A set of identifiers that are considered equivalent to the primary
      identifier of the entity. This attribute is used to represent a collection of
      identifiers that are considered equivalent to the primary identifier of an entity.
      These equivalent identifiers may come from different databases, ontologies,
      or naming conventions, but they all refer to the same underlying concept or
      entity. This attribute is particularly useful in data integration and interoperability
      scenarios, where it is important to recognize and link different representations
      of the same entity across various sources.
    from_schema: https://w3id.org/brain-bican/bke-taxonomy
    see_also:
    - biolink:xref
    - biolink:synonyms
    rank: 1000
    is_a: node property
    domain: named thing
    slot_uri: biolink:equivalent_identifiers
    alias: equivalent_identifiers
    owner: CellTypeSet
    domain_of:
    - named thing
    - attribute
    - organism taxon
    - study result
    - relative frequency analysis result
    - information content entity
    - dataset
    - physical entity
    - activity
    - procedure
    - material sample
    - biological entity
    - gene
    - genome
    range: uriorcurie
    multivalued: true
  named thing_category:
    name: named thing_category
    definition_uri: https://w3id.org/biolink/vocab/category
    description: Name of the high level ontology class in which this entity is categorized.
      Corresponds to the label for the biolink entity type class. In a neo4j database
      this MAY correspond to the neo4j label tag. In an RDF database it should be
      a biolink model class URI. This field is multi-valued. It should include values
      for ancestors of the biolink class; for example, a protein such as Shh would
      have category values `biolink:Protein`, `biolink:GeneProduct`, `biolink:MolecularEntity`.
      In an RDF database, nodes will typically have an rdf:type triples. This can
      be to the most specific biolink class, or potentially to a class more specific
      than something in biolink. For example, a sequence feature `f` may have a rdf:type
      assertion to a SO class such as TF_binding_site, which is more specific than
      anything in biolink. Here we would have categories {biolink:GenomicEntity, biolink:MolecularEntity,
      biolink:NamedThing}
    in_subset:
    - translator_minimal
    from_schema: https://w3id.org/brain-bican/bke-taxonomy
    rank: 1000
    is_a: category
    domain: named thing
    slot_uri: biolink:category
    designates_type: true
    alias: category
    owner: CellTypeSet
    domain_of:
    - named thing
    - attribute
    - organism taxon
    - study result
    - relative frequency analysis result
    - information content entity
    - dataset
    - physical entity
    - activity
    - procedure
    - material sample
    - biological entity
    - gene
    - genome
    is_class_field: true
    is_usage_slot: true
    usage_slot_name: category
    range: uriorcurie
    required: true
    multivalued: true
  category:
    name: category
    definition_uri: https://w3id.org/biolink/vocab/category
    description: Name of the high level ontology class in which this entity is categorized.
      Corresponds to the label for the biolink entity type class. In a neo4j database
      this MAY correspond to the neo4j label tag. In an RDF database it should be
      a biolink model class URI. This field is multi-valued. It should include values
      for ancestors of the biolink class; for example, a protein such as Shh would
      have category values `biolink:Protein`, `biolink:GeneProduct`, `biolink:MolecularEntity`.
      In an RDF database, nodes will typically have an rdf:type triples. This can
      be to the most specific biolink class, or potentially to a class more specific
      than something in biolink. For example, a sequence feature `f` may have a rdf:type
      assertion to a SO class such as TF_binding_site, which is more specific than
      anything in biolink. Here we would have categories {biolink:GenomicEntity, biolink:MolecularEntity,
      biolink:NamedThing}
    in_subset:
    - translator_minimal
    from_schema: https://w3id.org/brain-bican/bke-taxonomy
    rank: 1000
    is_a: type
    domain: entity
    slot_uri: biolink:category
    designates_type: true
    alias: category
    owner: CellTypeSet
    domain_of:
    - entity
    is_class_field: true
    range: uriorcurie
    required: true
    multivalued: true