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Class: AnatomicalSpace

An anatomical space is versioned release of a mathematical space with a defined mapping between the anatomical axes and the mathematical axes. An anatomical space may be defined by a reference image chosen as the biological reference for an anatomical structure of interest derived from a single or multiple specimens (ref: ILX:0777106, RRID:SCR_023499)

URI: AnS:AnatomicalSpace

classDiagram class AnatomicalSpace click AnatomicalSpace href "../AnatomicalSpace" VersionedNamedThing <|-- AnatomicalSpace click VersionedNamedThing href "../VersionedNamedThing" AnatomicalSpace : category AnatomicalSpace : description AnatomicalSpace : id AnatomicalSpace : measures AnatomicalSpace : name AnatomicalSpace : revision_of AnatomicalSpace --> "0..1" VersionedNamedThing : revision_of click VersionedNamedThing href "../VersionedNamedThing" AnatomicalSpace : version

Inheritance

Slots

Name Cardinality and Range Description Inheritance
measures 1
String or 
ImageDataset or 
String		 Reference to the specific image dataset used to define the anatomical space direct
version 1
String		 VersionedNamedThing
revision_of 0..1
VersionedNamedThing or 
AnatomicalSpace or 
String		 VersionedNamedThing
id 1
Uriorcurie		 NamedThing
name 1
String		 NamedThing
description 1
String		 NamedThing
category *
Uriorcurie		 NamedThing

Usages

used by used in type used
AnatomicalSpace revision_of any_of[range] AnatomicalSpace
AnatomicalAnnotationSet parameterizes any_of[range] AnatomicalSpace
ParcellationAtlas has_anatomical_space any_of[range] AnatomicalSpace

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/my-org/anatomical-structure-schema

Mappings

Mapping Type Mapped Value
self AnS:AnatomicalSpace
native AnS:AnatomicalSpace

LinkML Source

Direct

name: AnatomicalSpace
description: 'An anatomical space is versioned release of a mathematical space with
  a defined mapping  between the anatomical axes and the mathematical axes. An anatomical
  space may be defined by  a reference image chosen as the biological reference for
  an anatomical structure of interest  derived from a single or multiple specimens
  (ref: ILX:0777106, RRID:SCR_023499)'
from_schema: https://w3id.org/my-org/anatomical-structure-schema
is_a: VersionedNamedThing
slot_usage:
  revision_of:
    name: revision_of
    domain_of:
    - VersionedNamedThing
    any_of:
    - range: AnatomicalSpace
    - range: string
attributes:
  measures:
    name: measures
    description: Reference to the specific image dataset used to define the anatomical
      space.
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    domain_of:
    - AnatomicalSpace
    required: true
    any_of:
    - range: ImageDataset
    - range: string

Induced

name: AnatomicalSpace
description: 'An anatomical space is versioned release of a mathematical space with
  a defined mapping  between the anatomical axes and the mathematical axes. An anatomical
  space may be defined by  a reference image chosen as the biological reference for
  an anatomical structure of interest  derived from a single or multiple specimens
  (ref: ILX:0777106, RRID:SCR_023499)'
from_schema: https://w3id.org/my-org/anatomical-structure-schema
is_a: VersionedNamedThing
slot_usage:
  revision_of:
    name: revision_of
    domain_of:
    - VersionedNamedThing
    any_of:
    - range: AnatomicalSpace
    - range: string
attributes:
  measures:
    name: measures
    description: Reference to the specific image dataset used to define the anatomical
      space.
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    alias: measures
    owner: AnatomicalSpace
    domain_of:
    - AnatomicalSpace
    range: string
    required: true
    any_of:
    - range: ImageDataset
    - range: string
  version:
    name: version
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    alias: version
    owner: AnatomicalSpace
    domain_of:
    - VersionedNamedThing
    range: string
    required: true
  revision_of:
    name: revision_of
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    alias: revision_of
    owner: AnatomicalSpace
    domain_of:
    - VersionedNamedThing
    range: VersionedNamedThing
    any_of:
    - range: AnatomicalSpace
    - range: string
  id:
    name: id
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    identifier: true
    alias: id
    owner: AnatomicalSpace
    domain_of:
    - NamedThing
    range: uriorcurie
    required: true
  name:
    name: name
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    alias: name
    owner: AnatomicalSpace
    domain_of:
    - NamedThing
    range: string
    required: true
  description:
    name: description
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    alias: description
    owner: AnatomicalSpace
    domain_of:
    - NamedThing
    range: string
    required: true
  category:
    name: category
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    designates_type: true
    alias: category
    owner: AnatomicalSpace
    domain_of:
    - NamedThing
    is_class_field: true
    range: uriorcurie
    multivalued: true