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Class: AnatomicalAnnotationSet

An anatomical annotation set is a versioned release of a set of anatomical annotations anchored in the same anatomical space that divides the space into distinct segments following some annotation criteria or parcellation scheme. For example, the anatomical annotation set of 3D image based reference atlases (e.g. Allen Mouse CCF) can be expressed as a set of label indices of single multi-valued image annotations or as a set of segmentation masks (ref: ILX:0777108, RRID:SCR_023499)

URI: AnS:AnatomicalAnnotationSet

classDiagram class AnatomicalAnnotationSet click AnatomicalAnnotationSet href "../AnatomicalAnnotationSet" VersionedNamedThing <|-- AnatomicalAnnotationSet click VersionedNamedThing href "../VersionedNamedThing" AnatomicalAnnotationSet : category AnatomicalAnnotationSet : description AnatomicalAnnotationSet : id AnatomicalAnnotationSet : name AnatomicalAnnotationSet : parameterizes AnatomicalAnnotationSet : revision_of AnatomicalAnnotationSet --> "0..1" VersionedNamedThing : revision_of click VersionedNamedThing href "../VersionedNamedThing" AnatomicalAnnotationSet : version

Inheritance

Slots

Name Cardinality and Range Description Inheritance
parameterizes 1
String or 
AnatomicalSpace or 
String		 Reference to the anatomical space for which the anatomical annotation set is ... direct
version 1
String		 VersionedNamedThing
revision_of 0..1
VersionedNamedThing or 
AnatomicalAnnotationSet or 
String		 VersionedNamedThing
id 1
Uriorcurie		 NamedThing
name 1
String		 NamedThing
description 1
String		 NamedThing
category *
Uriorcurie		 NamedThing

Usages

used by used in type used
AnatomicalAnnotationSet revision_of any_of[range] AnatomicalAnnotationSet
ParcellationAnnotation part_of_anatomical_annotation_set any_of[range] AnatomicalAnnotationSet
ParcellationAtlas has_anatomical_annotation_set any_of[range] AnatomicalAnnotationSet

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/my-org/anatomical-structure-schema

Mappings

Mapping Type Mapped Value
self AnS:AnatomicalAnnotationSet
native AnS:AnatomicalAnnotationSet

LinkML Source

Direct

name: AnatomicalAnnotationSet
description: 'An anatomical annotation set is a versioned release of a set of anatomical
  annotations anchored  in the same anatomical space that divides the space into distinct
  segments following some annotation  criteria or parcellation scheme. For example,
  the anatomical annotation set of 3D image based  reference atlases (e.g. Allen Mouse
  CCF) can be expressed as a set of label indices of single  multi-valued image annotations
  or as a set of segmentation masks (ref: ILX:0777108, RRID:SCR_023499)'
from_schema: https://w3id.org/my-org/anatomical-structure-schema
is_a: VersionedNamedThing
slot_usage:
  revision_of:
    name: revision_of
    any_of:
    - range: AnatomicalAnnotationSet
    - range: string
attributes:
  parameterizes:
    name: parameterizes
    description: Reference to the anatomical space for which the anatomical annotation
      set is anchored
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    domain_of:
    - AnatomicalAnnotationSet
    required: true
    any_of:
    - range: AnatomicalSpace
    - range: string

Induced

name: AnatomicalAnnotationSet
description: 'An anatomical annotation set is a versioned release of a set of anatomical
  annotations anchored  in the same anatomical space that divides the space into distinct
  segments following some annotation  criteria or parcellation scheme. For example,
  the anatomical annotation set of 3D image based  reference atlases (e.g. Allen Mouse
  CCF) can be expressed as a set of label indices of single  multi-valued image annotations
  or as a set of segmentation masks (ref: ILX:0777108, RRID:SCR_023499)'
from_schema: https://w3id.org/my-org/anatomical-structure-schema
is_a: VersionedNamedThing
slot_usage:
  revision_of:
    name: revision_of
    any_of:
    - range: AnatomicalAnnotationSet
    - range: string
attributes:
  parameterizes:
    name: parameterizes
    description: Reference to the anatomical space for which the anatomical annotation
      set is anchored
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    alias: parameterizes
    owner: AnatomicalAnnotationSet
    domain_of:
    - AnatomicalAnnotationSet
    range: string
    required: true
    any_of:
    - range: AnatomicalSpace
    - range: string
  version:
    name: version
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    alias: version
    owner: AnatomicalAnnotationSet
    domain_of:
    - VersionedNamedThing
    range: string
    required: true
  revision_of:
    name: revision_of
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    alias: revision_of
    owner: AnatomicalAnnotationSet
    domain_of:
    - VersionedNamedThing
    range: VersionedNamedThing
    any_of:
    - range: AnatomicalAnnotationSet
    - range: string
  id:
    name: id
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    identifier: true
    alias: id
    owner: AnatomicalAnnotationSet
    domain_of:
    - NamedThing
    range: uriorcurie
    required: true
  name:
    name: name
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    alias: name
    owner: AnatomicalAnnotationSet
    domain_of:
    - NamedThing
    range: string
    required: true
  description:
    name: description
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    alias: description
    owner: AnatomicalAnnotationSet
    domain_of:
    - NamedThing
    range: string
    required: true
  category:
    name: category
    from_schema: https://w3id.org/my-org/anatomical-structure-schema
    rank: 1000
    designates_type: true
    alias: category
    owner: AnatomicalAnnotationSet
    domain_of:
    - NamedThing
    is_class_field: true
    range: uriorcurie
    multivalued: true