Subset: Analysis
A subset of slots/attributes that are required for analysis.
URI: Analysis
Identifier and Mapping Information
Schema Source
- from schema: https://identifiers.org/brain-bican/library-generation-schema
Slots in subset
| Slot | Description |
|---|---|
| average_size_bp | Average size of the library in terms of base pairs |
| cell_prep_type | The type of cell preparation |
| enrichment_population | Actual percentage of cells as a result of using set of fluorescent marker lab... |
| input_quantity | Number of enriched or dissociated cells/nuclei going into the barcoding proce... |
| input_quantity_ng | Amount of cDNA going into library construction in nanograms |
| local_tube_id | Library Pool Tube local name |
| number_of_expected_cells | Expected number of cells/nuclei of a barcoded_cell_sample that will be barcod... |
| pass_fail_result | Pass or Fail result based on qualitative assessment of cDNA yield and size |
| pcr_cycles | Number of PCR cycles used during cDNA amplification for this cDNA |
| percent_cdna_longer_than_400bp | QC metric to measure mRNA degradation of cDNA |
| port_well | Specific position of the loaded port of the 10x chip |
| quantity_fmol | Amount of library generated in terms of femtomoles |
| quantity_ng | Amount of cDNA produced after cDNA amplification measured in nanograms |
| r1_r2_index | Name of the pair of library indexes used for sequencing |
| set | cDNA amplification set, containing multiple amplified_cDNA_names that were pr... |