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Class: AmplifiedCdna

A collection of cDNA molecules derived and amplified from an input barcoded cell sample. These cDNA molecules represent the gene expression of each cell, with all cDNA molecules from a given cell retaining that cell's unique barcode from the cell barcoding step. This is a necessary step for GEX methods but is not used for ATAC methods.

URI: bican:AmplifiedCdna

classDiagram class AmplifiedCdna click AmplifiedCdna href "../AmplifiedCdna" ProvEntity <|-- AmplifiedCdna click ProvEntity href "../ProvEntity" MaterialSample <|-- AmplifiedCdna click MaterialSample href "../MaterialSample" AmplifiedCdna : category AmplifiedCdna : deprecated AmplifiedCdna : description AmplifiedCdna : full_name AmplifiedCdna : has_attribute AmplifiedCdna --> "*" Attribute : has_attribute click Attribute href "../Attribute" AmplifiedCdna : id AmplifiedCdna : iri AmplifiedCdna : name AmplifiedCdna : pass_fail_result AmplifiedCdna --> "0..1" AmplifiedCdnaRnaAmplificationPassFail : pass_fail_result click AmplifiedCdnaRnaAmplificationPassFail href "../AmplifiedCdnaRnaAmplificationPassFail" AmplifiedCdna : percent_cdna_longer_than_400bp AmplifiedCdna : provided_by AmplifiedCdna : quantity_ng AmplifiedCdna : synonym AmplifiedCdna : type AmplifiedCdna : was_derived_from AmplifiedCdna --> "0..1" BarcodedCellSample : was_derived_from click BarcodedCellSample href "../BarcodedCellSample" AmplifiedCdna : was_generated_by AmplifiedCdna --> "0..1" CdnaAmplification : was_generated_by click CdnaAmplification href "../CdnaAmplification" AmplifiedCdna : xref

Inheritance

Slots

Name Cardinality and Range Description Inheritance
was_generated_by 0..1
CdnaAmplification		 The cDNA amplification process from which the amplified cDNA was generated by direct
was_derived_from 0..1
BarcodedCellSample		 The input barcoded cell sample from which amplified cDNA was derived from direct
name 0..1
LabelType		 Name of a collection of cDNA molecules derived and amplified from an input ba... direct
quantity_ng 0..1
Float		 Amount of cDNA produced after cDNA amplification measured in nanograms direct
pass_fail_result 0..1
AmplifiedCdnaRnaAmplificationPassFail		 Pass or Fail result based on qualitative assessment of cDNA yield and size direct
percent_cdna_longer_than_400bp 0..1
Float		 QC metric to measure mRNA degradation of cDNA direct
id 1
String		 A unique identifier for an entity Entity, MaterialSample, NamedThing, PhysicalEntity
iri 0..1
IriType		 An IRI for an entity Entity, MaterialSample, NamedThing, PhysicalEntity
category *
Curie		 Name of the high level ontology class in which this entity is categorized Entity, MaterialSample, NamedThing, PhysicalEntity
type *
String		 Entity, MaterialSample, NamedThing, PhysicalEntity
description 0..1
NarrativeText		 a human-readable description of an entity Entity, MaterialSample, NamedThing, PhysicalEntity
has_attribute *
Attribute		 connects any entity to an attribute Entity, MaterialSample, NamedThing, PhysicalEntity
deprecated 0..1
Boolean		 A boolean flag indicating that an entity is no longer considered current or v... Entity, MaterialSample, NamedThing, PhysicalEntity
provided_by *
String		 The value in this node property represents the knowledge provider that create... MaterialSample, NamedThing, PhysicalEntity
xref *
Uriorcurie		 A database cross reference or alternative identifier for a NamedThing or edge... MaterialSample, NamedThing, PhysicalEntity
full_name 0..1
LabelType		 a long-form human readable name for a thing MaterialSample, NamedThing, PhysicalEntity
synonym *
LabelType		 Alternate human-readable names for a thing MaterialSample, NamedThing, PhysicalEntity

Usages

used by used in type used
Library was_derived_from any_of[range] AmplifiedCdna
LibraryConstruction used any_of[range] AmplifiedCdna

Identifier and Mapping Information

Schema Source

  • from schema: https://identifiers.org/brain-bican/library-generation-schema

Mappings

Mapping Type Mapped Value
self bican:AmplifiedCdna
native bican:AmplifiedCdna
exact NIMP:Amplified%20cDNA

LinkML Source

Direct

name: AmplifiedCdna
description: A collection of cDNA molecules derived and amplified from an input barcoded
  cell sample. These cDNA molecules represent the gene expression of each cell, with
  all cDNA molecules from a given cell retaining that cell's unique barcode from the
  cell barcoding step. This is a necessary step for GEX methods but is not used for
  ATAC methods.
in_subset:
- bican
- library_generation
from_schema: https://identifiers.org/brain-bican/library-generation-schema
exact_mappings:
- NIMP:Amplified%20cDNA
is_a: material sample
mixins:
- ProvEntity
slots:
- was_generated_by
- was_derived_from
- name
slot_usage:
  was_generated_by:
    name: was_generated_by
    description: The cDNA amplification process from which the amplified cDNA was
      generated by.
    domain_of:
    - TissueSample
    - DissociatedCellSample
    - EnrichedCellSample
    - BarcodedCellSample
    - AmplifiedCdna
    - Library
    - LibraryPool
    - DissectionRoiPolygon
    - ProvEntity
    range: CdnaAmplification
  was_derived_from:
    name: was_derived_from
    description: The input barcoded cell sample from which amplified cDNA was derived
      from.
    exact_mappings:
    - NIMP:has_parent
    domain_of:
    - BrainSlab
    - TissueSample
    - DissociatedCellSample
    - EnrichedCellSample
    - BarcodedCellSample
    - AmplifiedCdna
    - Library
    - LibraryAliquot
    - LibraryPool
    - DigitalAsset
    - ProvEntity
    range: BarcodedCellSample
  name:
    name: name
    local_names:
      NIMP:
        local_name_source: NIMP
        local_name_value: amplified_cdna_local_name
    description: Name of a collection of cDNA molecules derived and amplified from
      an input barcoded_cell_sample.  These cDNA molecules represent the gene expression
      of each cell, with all cDNA molecules from a given cell retaining that cell's
      unique barcode from the cell barcoding step.  This is a necessary step for GEX
      methods but is not used for ATAC methods.
    exact_mappings:
    - NIMP:PD-YAAGGG39
    slot_uri: bican:e2606a11-114e-472f-9e05-33f9b6fc3089
    domain_of:
    - Donor
    - BrainSlab
    - TissueSample
    - DissociatedCellSample
    - EnrichedCellSample
    - BarcodedCellSample
    - AmplifiedCdna
    - Library
    - LibraryAliquot
    - LibraryPool
    - DissectionRoiPolygon
    - entity
    - named thing
    - organism taxon
    - information content entity
    - dataset
    - physical entity
    - activity
    - procedure
    - material sample
    - biological entity
    - macromolecular machine mixin
    - gene or gene product
    - gene
    - genome
attributes:
  quantity_ng:
    name: quantity_ng
    local_names:
      NIMP:
        local_name_source: NIMP
        local_name_value: amplified_cdna_amplified_quantity_ng
    description: Amount of cDNA produced after cDNA amplification measured in nanograms.
    in_subset:
    - analysis
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    exact_mappings:
    - NIMP:PD-TITIIC26
    rank: 1000
    slot_uri: bican:0db79d05-8612-4896-b9d3-eb1558841449
    alias: amplified cDNA amplified quantity ng
    domain_of:
    - AmplifiedCdna
    - Library
    range: float
  pass_fail_result:
    name: pass_fail_result
    local_names:
      NIMP:
        local_name_source: NIMP
        local_name_value: amplified_cdna_rna_amplification_pass_fail
    description: Pass or Fail result based on qualitative assessment of cDNA yield
      and size.
    in_subset:
    - analysis
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    exact_mappings:
    - NIMP:PD-XXXXFQ31
    rank: 1000
    slot_uri: bican:bc62bdb2-7dc8-4404-bb84-ce0bbcae59e5
    alias: amplified cDNA RNA amplification pass-fail
    domain_of:
    - AmplifiedCdna
    - Library
    range: amplified_cdna_rna_amplification_pass_fail
  percent_cdna_longer_than_400bp:
    name: percent_cdna_longer_than_400bp
    local_names:
      NIMP:
        local_name_source: NIMP
        local_name_value: amplified_cdna_percent_cdna_longer_than_400bp
    description: QC metric to measure mRNA degradation of cDNA.  Higher % is higher
      quality starting material.  Over 400bp is used as a universal cutoff for intact
      (full length) vs degraded cDNA and is a common output from Bioanalyzer and Fragment
      Analyzer elecropheragrams.
    in_subset:
    - analysis
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    exact_mappings:
    - NIMP:PD-JJJJWD35
    rank: 1000
    slot_uri: bican:8d150467-f69e-461c-b54c-bcfd22f581e5
    alias: amplified cDNA percent cDNA longer than 400bp
    domain_of:
    - AmplifiedCdna
    range: float

Induced

name: AmplifiedCdna
description: A collection of cDNA molecules derived and amplified from an input barcoded
  cell sample. These cDNA molecules represent the gene expression of each cell, with
  all cDNA molecules from a given cell retaining that cell's unique barcode from the
  cell barcoding step. This is a necessary step for GEX methods but is not used for
  ATAC methods.
in_subset:
- bican
- library_generation
from_schema: https://identifiers.org/brain-bican/library-generation-schema
exact_mappings:
- NIMP:Amplified%20cDNA
is_a: material sample
mixins:
- ProvEntity
slot_usage:
  was_generated_by:
    name: was_generated_by
    description: The cDNA amplification process from which the amplified cDNA was
      generated by.
    domain_of:
    - TissueSample
    - DissociatedCellSample
    - EnrichedCellSample
    - BarcodedCellSample
    - AmplifiedCdna
    - Library
    - LibraryPool
    - DissectionRoiPolygon
    - ProvEntity
    range: CdnaAmplification
  was_derived_from:
    name: was_derived_from
    description: The input barcoded cell sample from which amplified cDNA was derived
      from.
    exact_mappings:
    - NIMP:has_parent
    domain_of:
    - BrainSlab
    - TissueSample
    - DissociatedCellSample
    - EnrichedCellSample
    - BarcodedCellSample
    - AmplifiedCdna
    - Library
    - LibraryAliquot
    - LibraryPool
    - DigitalAsset
    - ProvEntity
    range: BarcodedCellSample
  name:
    name: name
    local_names:
      NIMP:
        local_name_source: NIMP
        local_name_value: amplified_cdna_local_name
    description: Name of a collection of cDNA molecules derived and amplified from
      an input barcoded_cell_sample.  These cDNA molecules represent the gene expression
      of each cell, with all cDNA molecules from a given cell retaining that cell's
      unique barcode from the cell barcoding step.  This is a necessary step for GEX
      methods but is not used for ATAC methods.
    exact_mappings:
    - NIMP:PD-YAAGGG39
    slot_uri: bican:e2606a11-114e-472f-9e05-33f9b6fc3089
    domain_of:
    - Donor
    - BrainSlab
    - TissueSample
    - DissociatedCellSample
    - EnrichedCellSample
    - BarcodedCellSample
    - AmplifiedCdna
    - Library
    - LibraryAliquot
    - LibraryPool
    - DissectionRoiPolygon
    - entity
    - named thing
    - organism taxon
    - information content entity
    - dataset
    - physical entity
    - activity
    - procedure
    - material sample
    - biological entity
    - macromolecular machine mixin
    - gene or gene product
    - gene
    - genome
attributes:
  quantity_ng:
    name: quantity_ng
    local_names:
      NIMP:
        local_name_source: NIMP
        local_name_value: amplified_cdna_amplified_quantity_ng
    description: Amount of cDNA produced after cDNA amplification measured in nanograms.
    in_subset:
    - analysis
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    exact_mappings:
    - NIMP:PD-TITIIC26
    rank: 1000
    slot_uri: bican:0db79d05-8612-4896-b9d3-eb1558841449
    alias: amplified cDNA amplified quantity ng
    owner: AmplifiedCdna
    domain_of:
    - AmplifiedCdna
    - Library
    range: float
  pass_fail_result:
    name: pass_fail_result
    local_names:
      NIMP:
        local_name_source: NIMP
        local_name_value: amplified_cdna_rna_amplification_pass_fail
    description: Pass or Fail result based on qualitative assessment of cDNA yield
      and size.
    in_subset:
    - analysis
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    exact_mappings:
    - NIMP:PD-XXXXFQ31
    rank: 1000
    slot_uri: bican:bc62bdb2-7dc8-4404-bb84-ce0bbcae59e5
    alias: amplified cDNA RNA amplification pass-fail
    owner: AmplifiedCdna
    domain_of:
    - AmplifiedCdna
    - Library
    range: amplified_cdna_rna_amplification_pass_fail
  percent_cdna_longer_than_400bp:
    name: percent_cdna_longer_than_400bp
    local_names:
      NIMP:
        local_name_source: NIMP
        local_name_value: amplified_cdna_percent_cdna_longer_than_400bp
    description: QC metric to measure mRNA degradation of cDNA.  Higher % is higher
      quality starting material.  Over 400bp is used as a universal cutoff for intact
      (full length) vs degraded cDNA and is a common output from Bioanalyzer and Fragment
      Analyzer elecropheragrams.
    in_subset:
    - analysis
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    exact_mappings:
    - NIMP:PD-JJJJWD35
    rank: 1000
    slot_uri: bican:8d150467-f69e-461c-b54c-bcfd22f581e5
    alias: amplified cDNA percent cDNA longer than 400bp
    owner: AmplifiedCdna
    domain_of:
    - AmplifiedCdna
    range: float
  was_generated_by:
    name: was_generated_by
    description: The cDNA amplification process from which the amplified cDNA was
      generated by.
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    rank: 1000
    slot_uri: prov:wasGeneratedBy
    alias: was_generated_by
    owner: AmplifiedCdna
    domain_of:
    - TissueSample
    - DissociatedCellSample
    - EnrichedCellSample
    - BarcodedCellSample
    - AmplifiedCdna
    - Library
    - LibraryPool
    - DissectionRoiPolygon
    - ProvEntity
    range: CdnaAmplification
  was_derived_from:
    name: was_derived_from
    description: The input barcoded cell sample from which amplified cDNA was derived
      from.
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    exact_mappings:
    - NIMP:has_parent
    rank: 1000
    slot_uri: prov:wasDerivedFrom
    alias: was_derived_from
    owner: AmplifiedCdna
    domain_of:
    - BrainSlab
    - TissueSample
    - DissociatedCellSample
    - EnrichedCellSample
    - BarcodedCellSample
    - AmplifiedCdna
    - Library
    - LibraryAliquot
    - LibraryPool
    - DigitalAsset
    - ProvEntity
    range: BarcodedCellSample
  name:
    name: name
    definition_uri: https://w3id.org/biolink/vocab/name
    local_names:
      NIMP:
        local_name_source: NIMP
        local_name_value: amplified_cdna_local_name
    description: Name of a collection of cDNA molecules derived and amplified from
      an input barcoded_cell_sample.  These cDNA molecules represent the gene expression
      of each cell, with all cDNA molecules from a given cell retaining that cell's
      unique barcode from the cell barcoding step.  This is a necessary step for GEX
      methods but is not used for ATAC methods.
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    exact_mappings:
    - NIMP:PD-YAAGGG39
    rank: 1000
    domain: entity
    slot_uri: bican:e2606a11-114e-472f-9e05-33f9b6fc3089
    alias: name
    owner: AmplifiedCdna
    domain_of:
    - Donor
    - BrainSlab
    - TissueSample
    - DissociatedCellSample
    - EnrichedCellSample
    - BarcodedCellSample
    - AmplifiedCdna
    - Library
    - LibraryAliquot
    - LibraryPool
    - DissectionRoiPolygon
    - entity
    - named thing
    - organism taxon
    - information content entity
    - dataset
    - physical entity
    - activity
    - procedure
    - material sample
    - biological entity
    - macromolecular machine mixin
    - gene or gene product
    - gene
    - genome
    range: label type
  id:
    name: id
    definition_uri: https://w3id.org/biolink/vocab/id
    description: A unique identifier for an entity. Must be either a CURIE shorthand
      for a URI or a complete URI
    in_subset:
    - translator_minimal
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    exact_mappings:
    - AGRKB:primaryId
    - gff3:ID
    - gpi:DB_Object_ID
    rank: 1000
    domain: entity
    slot_uri: biolink:id
    identifier: true
    alias: id
    owner: AmplifiedCdna
    domain_of:
    - ontology class
    - entity
    - attribute
    - named thing
    - taxonomic rank
    - organism taxon
    - information content entity
    - dataset
    - physical entity
    - activity
    - procedure
    - material sample
    - biological entity
    - gene
    - genome
    range: string
    required: true
  iri:
    name: iri
    definition_uri: https://w3id.org/biolink/vocab/iri
    description: An IRI for an entity. This is determined by the id using expansion
      rules.
    in_subset:
    - translator_minimal
    - samples
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    exact_mappings:
    - WIKIDATA_PROPERTY:P854
    rank: 1000
    slot_uri: biolink:iri
    alias: iri
    owner: AmplifiedCdna
    domain_of:
    - attribute
    - entity
    - named thing
    - organism taxon
    - information content entity
    - dataset
    - physical entity
    - activity
    - procedure
    - material sample
    - biological entity
    - gene
    - genome
    range: iri type
  category:
    name: category
    definition_uri: https://w3id.org/biolink/vocab/category
    description: 'Name of the high level ontology class in which this entity is categorized.
      Corresponds to the label for the biolink entity type class. In a neo4j database
      this MAY correspond to the neo4j label tag. In an RDF database it should be
      a biolink model class URI. This field is multi-valued. It should include values
      for ancestors of the biolink class; for example, a protein such as Shh would
      have category values `biolink:Protein`, `biolink:GeneProduct`, `biolink:MolecularEntity`.
      In an RDF database, nodes will typically have an rdf:type triples. This can
      be to the most specific biolink class, or potentially to a class more specific
      than something in biolink. For example, a sequence feature `f` may have a rdf:type
      assertion to a SO class such as TF_binding_site, which is more specific than
      anything in biolink. Here we would have categories {biolink:GenomicEntity, biolink:MolecularEntity,
      biolink:NamedThing}. NOTE: The category slot was modified to have a curie range
      and a pattern for bican categories.'
    in_subset:
    - translator_minimal
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    rank: 1000
    is_a: type
    domain: entity
    slot_uri: biolink:category
    designates_type: true
    alias: category
    owner: AmplifiedCdna
    domain_of:
    - entity
    - attribute
    - named thing
    - organism taxon
    - information content entity
    - dataset
    - physical entity
    - activity
    - procedure
    - material sample
    - biological entity
    - gene
    - genome
    is_class_field: true
    range: curie
    multivalued: true
    pattern: ^bican:[A-Z][A-Za-z]+$
  type:
    name: type
    definition_uri: https://w3id.org/biolink/vocab/type
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    mappings:
    - rdf:type
    exact_mappings:
    - gff3:type
    - gpi:DB_Object_Type
    rank: 1000
    domain: entity
    slot_uri: rdf:type
    alias: type
    owner: AmplifiedCdna
    domain_of:
    - entity
    - attribute
    - named thing
    - organism taxon
    - information content entity
    - dataset
    - physical entity
    - activity
    - procedure
    - material sample
    - biological entity
    - gene
    - genome
    range: string
    multivalued: true
  description:
    name: description
    definition_uri: https://w3id.org/biolink/vocab/description
    description: a human-readable description of an entity
    in_subset:
    - translator_minimal
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    aliases:
    - definition
    mappings:
    - dct:description
    exact_mappings:
    - IAO:0000115
    - skos:definitions
    narrow_mappings:
    - gff3:Description
    rank: 1000
    slot_uri: dct:description
    alias: description
    owner: AmplifiedCdna
    domain_of:
    - entity
    - attribute
    - named thing
    - organism taxon
    - information content entity
    - dataset
    - physical entity
    - activity
    - procedure
    - material sample
    - biological entity
    - gene
    - genome
    range: narrative text
  has attribute:
    name: has attribute
    definition_uri: https://w3id.org/biolink/vocab/has_attribute
    description: connects any entity to an attribute
    in_subset:
    - samples
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    exact_mappings:
    - SIO:000008
    close_mappings:
    - OBI:0001927
    narrow_mappings:
    - OBAN:association_has_subject_property
    - OBAN:association_has_object_property
    - CPT:has_possibly_included_panel_element
    - DRUGBANK:category
    - EFO:is_executed_in
    - HANCESTRO:0301
    - LOINC:has_action_guidance
    - LOINC:has_adjustment
    - LOINC:has_aggregation_view
    - LOINC:has_approach_guidance
    - LOINC:has_divisor
    - LOINC:has_exam
    - LOINC:has_method
    - LOINC:has_modality_subtype
    - LOINC:has_object_guidance
    - LOINC:has_scale
    - LOINC:has_suffix
    - LOINC:has_time_aspect
    - LOINC:has_time_modifier
    - LOINC:has_timing_of
    - NCIT:R88
    - NCIT:eo_disease_has_property_or_attribute
    - NCIT:has_data_element
    - NCIT:has_pharmaceutical_administration_method
    - NCIT:has_pharmaceutical_basic_dose_form
    - NCIT:has_pharmaceutical_intended_site
    - NCIT:has_pharmaceutical_release_characteristics
    - NCIT:has_pharmaceutical_state_of_matter
    - NCIT:has_pharmaceutical_transformation
    - NCIT:is_qualified_by
    - NCIT:qualifier_applies_to
    - NCIT:role_has_domain
    - NCIT:role_has_range
    - INO:0000154
    - HANCESTRO:0308
    - OMIM:has_inheritance_type
    - orphanet:C016
    - orphanet:C017
    - RO:0000053
    - RO:0000086
    - RO:0000087
    - SNOMED:has_access
    - SNOMED:has_clinical_course
    - SNOMED:has_count_of_base_of_active_ingredient
    - SNOMED:has_dose_form_administration_method
    - SNOMED:has_dose_form_release_characteristic
    - SNOMED:has_dose_form_transformation
    - SNOMED:has_finding_context
    - SNOMED:has_finding_informer
    - SNOMED:has_inherent_attribute
    - SNOMED:has_intent
    - SNOMED:has_interpretation
    - SNOMED:has_laterality
    - SNOMED:has_measurement_method
    - SNOMED:has_method
    - SNOMED:has_priority
    - SNOMED:has_procedure_context
    - SNOMED:has_process_duration
    - SNOMED:has_property
    - SNOMED:has_revision_status
    - SNOMED:has_scale_type
    - SNOMED:has_severity
    - SNOMED:has_specimen
    - SNOMED:has_state_of_matter
    - SNOMED:has_subject_relationship_context
    - SNOMED:has_surgical_approach
    - SNOMED:has_technique
    - SNOMED:has_temporal_context
    - SNOMED:has_time_aspect
    - SNOMED:has_units
    - UMLS:has_structural_class
    - UMLS:has_supported_concept_property
    - UMLS:has_supported_concept_relationship
    - UMLS:may_be_qualified_by
    rank: 1000
    domain: entity
    slot_uri: biolink:has_attribute
    alias: has_attribute
    owner: AmplifiedCdna
    domain_of:
    - entity
    - attribute
    - named thing
    - organism taxon
    - information content entity
    - dataset
    - physical entity
    - activity
    - procedure
    - material sample
    - biological entity
    - gene
    - genome
    range: attribute
    multivalued: true
  deprecated:
    name: deprecated
    definition_uri: https://w3id.org/biolink/vocab/deprecated
    description: A boolean flag indicating that an entity is no longer considered
      current or valid.
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    exact_mappings:
    - oboInOwl:ObsoleteClass
    rank: 1000
    slot_uri: biolink:deprecated
    alias: deprecated
    owner: AmplifiedCdna
    domain_of:
    - entity
    - attribute
    - named thing
    - organism taxon
    - information content entity
    - dataset
    - physical entity
    - activity
    - procedure
    - material sample
    - biological entity
    - gene
    - genome
    range: boolean
  provided by:
    name: provided by
    definition_uri: https://w3id.org/biolink/vocab/provided_by
    description: The value in this node property represents the knowledge provider
      that created or assembled the node and all of its attributes.  Used internally
      to represent how a particular node made its way into a knowledge provider or
      graph.
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    rank: 1000
    is_a: node property
    domain: named thing
    slot_uri: biolink:provided_by
    alias: provided_by
    owner: AmplifiedCdna
    domain_of:
    - named thing
    - attribute
    - organism taxon
    - information content entity
    - dataset
    - physical entity
    - activity
    - procedure
    - material sample
    - biological entity
    - gene
    - genome
    range: string
    multivalued: true
  xref:
    name: xref
    definition_uri: https://w3id.org/biolink/vocab/xref
    description: A database cross reference or alternative identifier for a NamedThing
      or edge between two NamedThings.  This property should point to a database record
      or webpage that supports the existence of the edge, or gives more detail about
      the edge. This property can be used on a node or edge to provide multiple URIs
      or CURIE cross references.
    in_subset:
    - translator_minimal
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    aliases:
    - dbxref
    - Dbxref
    - DbXref
    - record_url
    - source_record_urls
    narrow_mappings:
    - gff3:Dbxref
    - gpi:DB_Xrefs
    rank: 1000
    domain: named thing
    slot_uri: biolink:xref
    alias: xref
    owner: AmplifiedCdna
    domain_of:
    - named thing
    - gene
    - attribute
    - organism taxon
    - information content entity
    - dataset
    - physical entity
    - activity
    - procedure
    - material sample
    - biological entity
    - genome
    range: uriorcurie
    multivalued: true
  full name:
    name: full name
    definition_uri: https://w3id.org/biolink/vocab/full_name
    description: a long-form human readable name for a thing
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    rank: 1000
    is_a: node property
    domain: named thing
    slot_uri: biolink:full_name
    alias: full_name
    owner: AmplifiedCdna
    domain_of:
    - named thing
    - attribute
    - organism taxon
    - information content entity
    - dataset
    - physical entity
    - activity
    - procedure
    - material sample
    - biological entity
    - gene
    - genome
    range: label type
  synonym:
    name: synonym
    definition_uri: https://w3id.org/biolink/vocab/synonym
    description: Alternate human-readable names for a thing
    in_subset:
    - translator_minimal
    from_schema: https://identifiers.org/brain-bican/library-generation-schema
    aliases:
    - alias
    narrow_mappings:
    - skos:altLabel
    - gff3:Alias
    - AGRKB:synonyms
    - gpi:DB_Object_Synonyms
    - HANCESTRO:0330
    - IAO:0000136
    - RXNORM:has_tradename
    rank: 1000
    is_a: node property
    domain: named thing
    slot_uri: biolink:synonym
    alias: synonym
    owner: AmplifiedCdna
    domain_of:
    - named thing
    - attribute
    - organism taxon
    - information content entity
    - dataset
    - physical entity
    - activity
    - procedure
    - material sample
    - biological entity
    - gene
    - genome
    range: label type
    multivalued: true