CS202210140_97
DLNP_96 (CS202210140_97)
Hierarchy: CS202210140_473 > CS202210140_97
PURL: https://purl.brain-bican.org/taxonomy/CS202210140/CS202210140_neurons/CS202210140_97
Labelset: Cluster (Rank: 1)
Parent Cell Set: Deep-layer near-projecting (CS202210140_473)
Cell Ontology Term:
Transferred annotations:
| Transferred cell label | Source taxonomy | Source node accession | Algorithm name | Comment |
|---|---|---|---|---|
| L5/6 NP | https://purl.brain-bican.org/taxonomy/AIT_MTG/AIT_MTG.json | CrossArea_subclass:2d233a9ab8 | We performed PCA (50 components) on our full dataset, trained a random forest classifier (scikit-learn, class_ weight=‘balanced’, max_depth=50) on the MTG labels, and then predicted labels for all cells. We labeled each cluster with the mode of its constituent cells if two conditions were met: more than 0.8 of predicted labels matched the mode, and the mean probability of these pre- dictions was greater than 0.8. |
Author annotation fields:
| Author annotation | Value |
|---|---|
| Cluster ID | 96 |
| Class auto_annotation | NEUR |
| Neurotransmitter auto_annotation | VGLUT1 VGLUT2 |
| Neuropeptide auto_annotation | CCK CHGA CHGB GRP NAMPT NUCB NXPH UBL UCN proSAAS |
| Subtype auto_annotation | None |
| Transferred MTG Label | L5/6 NP |
| Top three regions | Cerebral cortex: 85.1%, Amygdala: 7.0%, Basal forebrain: 5.7% |
| Top three dissections | Human A38: 17.5%, Human MTG: 9.1%, Human Idg: 8.3% |
| Top Enriched Genes | HMGA2, AC129807.1, MYOCD, NPSR1-AS1, CD200R1L, ERG, COL8A1, TRIM22, FER1L6-AS2, CCDC80 |
| Number of cells | 685.0 |
| DoubletFinder score | 0.043474492 |
| Total UMI | 30852.62628 |
| Fraction unspliced | 0.742676633 |
| Fraction mitochondrial | 0.003642022 |
| H19.30.002 | 223.0 |
| H19.30.001 | 211.0 |
| H18.30.002 | 236.0 |
| H18.30.001 | 15.0 |
| Fraction cells from top donor | 0.344525547 |
| Number of donors | 4.0 |
| subcluster_id | None |