CS202210140_96
DLNP_95 (CS202210140_96)
Hierarchy: CS202210140_473 > CS202210140_96
PURL: https://purl.brain-bican.org/taxonomy/CS202210140/CS202210140_neurons/CS202210140_96
Labelset: Cluster (Rank: 1)
Parent Cell Set: Deep-layer near-projecting (CS202210140_473)
Cell Ontology Term:
Transferred annotations:
| Transferred cell label | Source taxonomy | Source node accession | Algorithm name | Comment |
|---|---|---|---|---|
| L5/6 NP | https://purl.brain-bican.org/taxonomy/AIT_MTG/AIT_MTG.json | CrossArea_subclass:2d233a9ab8 | We performed PCA (50 components) on our full dataset, trained a random forest classifier (scikit-learn, class_ weight=‘balanced’, max_depth=50) on the MTG labels, and then predicted labels for all cells. We labeled each cluster with the mode of its constituent cells if two conditions were met: more than 0.8 of predicted labels matched the mode, and the mean probability of these pre- dictions was greater than 0.8. |
Author annotation fields:
| Author annotation | Value |
|---|---|
| Cluster ID | 95 |
| Class auto_annotation | NEUR |
| Neurotransmitter auto_annotation | VGLUT1 |
| Neuropeptide auto_annotation | CCK CHGA CHGB GRP NAMPT NUCB NXPH UBL UCN VGF proSAAS |
| Subtype auto_annotation | None |
| Transferred MTG Label | L5/6 NP |
| Top three regions | Cerebral cortex: 89.0%, Basal forebrain: 7.0%, Hypothalamus: 3.3% |
| Top three dissections | Human A25: 21.2%, Human ACC: 13.9%, Human AON: 12.5% |
| Top Enriched Genes | NPSR1-AS1, AC009081.2, ERG, CCDC80, HMGA2, MYOCD, PDLIM1, CD200R1L, FSHR, GNAT3 |
| Number of cells | 1307.0 |
| DoubletFinder score | 0.026316845 |
| Total UMI | 30629.0635 |
| Fraction unspliced | 0.736956179 |
| Fraction mitochondrial | 0.003887312 |
| H19.30.002 | 413.0 |
| H19.30.001 | 248.0 |
| H18.30.002 | 606.0 |
| H18.30.001 | 40.0 |
| Fraction cells from top donor | 0.46365723 |
| Number of donors | 4.0 |
| subcluster_id | None |