CS202210140_95
DLNP_94 (CS202210140_95)
Hierarchy: CS202210140_473 > CS202210140_95
PURL: https://purl.brain-bican.org/taxonomy/CS202210140/CS202210140_neurons/CS202210140_95
Labelset: Cluster (Rank: 1)
Parent Cell Set: Deep-layer near-projecting (CS202210140_473)
Cell Ontology Term:
Transferred annotations:
| Transferred cell label | Source taxonomy | Source node accession | Algorithm name | Comment |
|---|---|---|---|---|
| L5/6 NP | https://purl.brain-bican.org/taxonomy/AIT_MTG/AIT_MTG.json | CrossArea_subclass:2d233a9ab8 | We performed PCA (50 components) on our full dataset, trained a random forest classifier (scikit-learn, class_ weight=‘balanced’, max_depth=50) on the MTG labels, and then predicted labels for all cells. We labeled each cluster with the mode of its constituent cells if two conditions were met: more than 0.8 of predicted labels matched the mode, and the mean probability of these pre- dictions was greater than 0.8. |
Author annotation fields:
| Author annotation | Value |
|---|---|
| Cluster ID | 94 |
| Class auto_annotation | NEUR |
| Neurotransmitter auto_annotation | VGLUT1 |
| Neuropeptide auto_annotation | CCK CHGA CHGB NAMPT NUCB NXPH UBL UCN VGF proSAAS |
| Subtype auto_annotation | None |
| Transferred MTG Label | L5/6 NP |
| Top three regions | Cerebral cortex: 94.1%, Hippocampus: 2.6%, Amygdala: 2.0% |
| Top three dissections | Human MTG: 18.0%, Human TF: 6.6%, Human V2: 6.2% |
| Top Enriched Genes | IFNG-AS1, CD200R1L, LINC02218, NPSR1-AS1, LINC02042, CCDC80, IL26, BARX2, CD200R1L-AS1, ERG |
| Number of cells | 2547.0 |
| DoubletFinder score | 0.025201441 |
| Total UMI | 22041.81076 |
| Fraction unspliced | 0.70489682 |
| Fraction mitochondrial | 0.004503573 |
| H19.30.002 | 758.0 |
| H19.30.001 | 862.0 |
| H18.30.002 | 844.0 |
| H18.30.001 | 83.0 |
| Fraction cells from top donor | 0.338437377 |
| Number of donors | 4.0 |
| subcluster_id | None |