CS202210140_93
DLNP_92 (CS202210140_93)
Hierarchy: CS202210140_473 > CS202210140_93
PURL: https://purl.brain-bican.org/taxonomy/CS202210140/CS202210140_neurons/CS202210140_93
Labelset: Cluster (Rank: 1)
Parent Cell Set: Deep-layer near-projecting (CS202210140_473)
Cell Ontology Term:
Transferred annotations:
| Transferred cell label | Source taxonomy | Source node accession | Algorithm name | Comment |
|---|---|---|---|---|
| L5/6 NP | https://purl.brain-bican.org/taxonomy/AIT_MTG/AIT_MTG.json | CrossArea_subclass:2d233a9ab8 | We performed PCA (50 components) on our full dataset, trained a random forest classifier (scikit-learn, class_ weight=‘balanced’, max_depth=50) on the MTG labels, and then predicted labels for all cells. We labeled each cluster with the mode of its constituent cells if two conditions were met: more than 0.8 of predicted labels matched the mode, and the mean probability of these pre- dictions was greater than 0.8. |
Author annotation fields:
| Author annotation | Value |
|---|---|
| Cluster ID | 92 |
| Class auto_annotation | NEUR |
| Neurotransmitter auto_annotation | VGLUT1 |
| Neuropeptide auto_annotation | CCK CHGA CHGB GRP NAMPT NUCB NXPH UBL UCN VGF proSAAS |
| Subtype auto_annotation | None |
| Transferred MTG Label | L5/6 NP |
| Top three regions | Cerebral cortex: 94.7%, Hippocampus: 2.5%, Basal forebrain: 2.2% |
| Top three dissections | Human MTG: 12.1%, Human Ig: 8.6%, Human A1C: 6.9% |
| Top Enriched Genes | CD200R1L, ERG, IFNG-AS1, NPSR1-AS1, BARX2, LINC02042, AC009081.2, AC129807.1, CD200R1L-AS1, CCDC80 |
| Number of cells | 2119.0 |
| DoubletFinder score | 0.022688027 |
| Total UMI | 22297.89712 |
| Fraction unspliced | 0.717177897 |
| Fraction mitochondrial | 0.004354605 |
| H19.30.002 | 587.0 |
| H19.30.001 | 718.0 |
| H18.30.002 | 724.0 |
| H18.30.001 | 90.0 |
| Fraction cells from top donor | 0.341670599 |
| Number of donors | 4.0 |
| subcluster_id | None |