CS202210140_284
CGE_283 (CS202210140_284)
Hierarchy: CS202210140_486 > CS202210140_284
PURL: https://purl.brain-bican.org/taxonomy/CS202210140/CS202210140_neurons/CS202210140_284
Labelset: Cluster (Rank: 1)
Parent Cell Set: CGE interneuron (CS202210140_486)
Cell Ontology Term:
Transferred annotations:
| Transferred cell label | Source taxonomy | Source node accession | Algorithm name | Comment |
|---|---|---|---|---|
| Sncg | https://purl.brain-bican.org/taxonomy/AIT_MTG/AIT_MTG.json | CrossArea_subclass:069c284831 | We performed PCA (50 components) on our full dataset, trained a random forest classifier (scikit-learn, class_ weight=‘balanced’, max_depth=50) on the MTG labels, and then predicted labels for all cells. We labeled each cluster with the mode of its constituent cells if two conditions were met: more than 0.8 of predicted labels matched the mode, and the mean probability of these pre- dictions was greater than 0.8. |
Author annotation fields:
| Author annotation | Value |
|---|---|
| Cluster ID | 283 |
| Class auto_annotation | NEUR |
| Neurotransmitter auto_annotation | GABA |
| Neuropeptide auto_annotation | CCK CHGA CHGB IGF NAMPT NUCB NXPH PNOC SCG SST UBL VGF proSAAS |
| Subtype auto_annotation | None |
| Transferred MTG Label | Sncg |
| Top three regions | Cerebral cortex: 81.0%, Hippocampus: 9.3%, Amygdala: 5.0% |
| Top three dissections | Human MTG: 5.2%, Human A32: 4.5%, Human MEC: 4.1% |
| Top Enriched Genes | CXCL14, AC004862.1, BAGE2, PCDH18, AL139090.1, AL356585.4, AL391832.4, SGO1-AS1, AC073316.1, KMO |
| Number of cells | 10636.0 |
| DoubletFinder score | 0.023720415 |
| Total UMI | 12154.83847 |
| Fraction unspliced | 0.691814816 |
| Fraction mitochondrial | 0.006783374 |
| H19.30.002 | 3332.0 |
| H19.30.001 | 3837.0 |
| H18.30.002 | 3348.0 |
| H18.30.001 | 119.0 |
| Fraction cells from top donor | 0.360755923 |
| Number of donors | 4.0 |
| subcluster_id | None |