CS202210140_283
CGE_282 (CS202210140_283)
Hierarchy: CS202210140_486 > CS202210140_283
PURL: https://purl.brain-bican.org/taxonomy/CS202210140/CS202210140_neurons/CS202210140_283
Labelset: Cluster (Rank: 1)
Parent Cell Set: CGE interneuron (CS202210140_486)
Cell Ontology Term:
Transferred annotations:
| Transferred cell label | Source taxonomy | Source node accession | Algorithm name | Comment |
|---|---|---|---|---|
| Sncg | https://purl.brain-bican.org/taxonomy/AIT_MTG/AIT_MTG.json | CrossArea_subclass:069c284831 | We performed PCA (50 components) on our full dataset, trained a random forest classifier (scikit-learn, class_ weight=‘balanced’, max_depth=50) on the MTG labels, and then predicted labels for all cells. We labeled each cluster with the mode of its constituent cells if two conditions were met: more than 0.8 of predicted labels matched the mode, and the mean probability of these pre- dictions was greater than 0.8. |
Author annotation fields:
| Author annotation | Value |
|---|---|
| Cluster ID | 282 |
| Class auto_annotation | NEUR |
| Neurotransmitter auto_annotation | GABA |
| Neuropeptide auto_annotation | CCK CHGA CHGB CRH IGF NAMPT NUCB PNOC SCG UBL proSAAS |
| Subtype auto_annotation | None |
| Transferred MTG Label | Sncg |
| Top three regions | Cerebral cortex: 82.6%, Hippocampus: 11.9%, Amygdala: 2.2% |
| Top three dissections | Human A32: 5.2%, Human MTG: 5.1%, Human M1C: 4.8% |
| Top Enriched Genes | AC004862.1, AC091576.1, ADAM33, CXCL14, NDNF, AL139090.1, AL391832.4, AC073316.1, ARHGAP36, AC068633.1 |
| Number of cells | 10065.0 |
| DoubletFinder score | 0.022418843 |
| Total UMI | 11794.50094 |
| Fraction unspliced | 0.687094575 |
| Fraction mitochondrial | 0.007963189 |
| H19.30.002 | 3030.0 |
| H19.30.001 | 3864.0 |
| H18.30.002 | 3070.0 |
| H18.30.001 | 101.0 |
| Fraction cells from top donor | 0.38390462 |
| Number of donors | 4.0 |
| subcluster_id | None |