CS202210140_279
CGE_278 (CS202210140_279)
Hierarchy: CS202210140_486 > CS202210140_279
PURL: https://purl.brain-bican.org/taxonomy/CS202210140/CS202210140_neurons/CS202210140_279
Labelset: Cluster (Rank: 1)
Parent Cell Set: CGE interneuron (CS202210140_486)
Cell Ontology Term:
Transferred annotations:
| Transferred cell label | Source taxonomy | Source node accession | Algorithm name | Comment |
|---|---|---|---|---|
| Pax6 | https://purl.brain-bican.org/taxonomy/AIT_MTG/AIT_MTG.json | CrossArea_subclass:ae541c9995 | We performed PCA (50 components) on our full dataset, trained a random forest classifier (scikit-learn, class_ weight=‘balanced’, max_depth=50) on the MTG labels, and then predicted labels for all cells. We labeled each cluster with the mode of its constituent cells if two conditions were met: more than 0.8 of predicted labels matched the mode, and the mean probability of these pre- dictions was greater than 0.8. |
Author annotation fields:
| Author annotation | Value |
|---|---|
| Cluster ID | 278 |
| Class auto_annotation | NEUR |
| Neurotransmitter auto_annotation | GABA VGLUT3 |
| Neuropeptide auto_annotation | CCK CHGA CHGB CRH IGF NAMPT NPW NUCB NXPH PNOC SCG SST UBL proSAAS |
| Subtype auto_annotation | None |
| Transferred MTG Label | Pax6 |
| Top three regions | Cerebral cortex: 78.0%, Amygdala: 10.4%, Hippocampus: 8.1% |
| Top three dissections | Human MEC: 5.9%, Human LEC: 4.8%, Human M1C: 4.7% |
| Top Enriched Genes | SP8, CXCL14, DDR2, AC006305.1, AC005064.1, RELN, ABCB5, GRPR, AC092819.3, NDNF |
| Number of cells | 7177.0 |
| DoubletFinder score | 0.040213577 |
| Total UMI | 15390.37188 |
| Fraction unspliced | 0.655600556 |
| Fraction mitochondrial | 0.011946499 |
| H19.30.002 | 2298.0 |
| H19.30.001 | 2635.0 |
| H18.30.002 | 2168.0 |
| H18.30.001 | 76.0 |
| Fraction cells from top donor | 0.367145047 |
| Number of donors | 4.0 |
| subcluster_id | None |