CS202210140_247
MGE_246 (CS202210140_247)
Hierarchy: CS202210140_484 > CS202210140_247
PURL: https://purl.brain-bican.org/taxonomy/CS202210140/CS202210140_neurons/CS202210140_247
Labelset: Cluster (Rank: 1)
Parent Cell Set: MGE interneuron (CS202210140_484)
Cell Ontology Term: sst GABAergic cortical interneuron (CL:4023017)
Rationale: Exclude ADARB2 because SST is expressed in some LAMP5-LHX6 interneurons
| Rationale DOIs |
|---|
| https://doi.org/10.1038/s41586-020-2781-z |
| Marker Genes |
|---|
| FOXG1 |
| NR2F1 |
| DLX1 |
| LHX6 |
| GAD2 |
| SST |
Author annotation fields:
| Author annotation | Value |
|---|---|
| Cluster ID | 246 |
| Class auto_annotation | NEUR |
| Neurotransmitter auto_annotation | GABA |
| Neuropeptide auto_annotation | CBLN CCK CHGA CHGB CORT IGF NAMPT NMU NPPC NPY NUCB NXPH PENK PNOC SCG SST TAC UBL VGF proSAAS |
| Subtype auto_annotation | INT-SST |
| Transferred MTG Label | None |
| Top three regions | Hippocampus: 72.3%, Cerebral cortex: 16.5%, Amygdala: 8.9% |
| Top three dissections | Human CA4C-DGC: 21.5%, Human CA3R: 12.6%, Human CA1C-CA3C: 9.5% |
| Top Enriched Genes | AC113347.4, PROM1, ELFN1, SST, LINC02192, TNFSF15, TAC1, LINC01687, DEPDC1, NGF |
| Number of cells | 2100.0 |
| DoubletFinder score | 0.062777909 |
| Total UMI | 29732.63667 |
| Fraction unspliced | 0.707209917 |
| Fraction mitochondrial | 0.007565874 |
| H19.30.002 | 727.0 |
| H19.30.001 | 505.0 |
| H18.30.002 | 851.0 |
| H18.30.001 | 17.0 |
| Fraction cells from top donor | 0.405238095 |
| Number of donors | 4.0 |
| subcluster_id | None |