CS202210140_240
MGE_239 (CS202210140_240)
Hierarchy: CS202210140_484 > CS202210140_240
PURL: https://purl.brain-bican.org/taxonomy/CS202210140/CS202210140_neurons/CS202210140_240
Labelset: Cluster (Rank: 1)
Parent Cell Set: MGE interneuron (CS202210140_484)
Cell Ontology Term: sst GABAergic cortical interneuron (CL:4023017)
Rationale: Exclude ADARB2 because SST is expressed in some LAMP5-LHX6 interneurons
| Rationale DOIs |
|---|
| https://doi.org/10.1038/s41586-020-2781-z |
| Marker Genes |
|---|
| FOXG1 |
| NR2F1 |
| DLX1 |
| LHX6 |
| GAD2 |
| SST |
Author annotation fields:
| Author annotation | Value |
|---|---|
| Cluster ID | 239 |
| Class auto_annotation | NEUR |
| Neurotransmitter auto_annotation | GABA |
| Neuropeptide auto_annotation | CCK CHGA CHGB CORT IGF NAMPT NMU NPPC NUCB NXPH PNOC SCG SST TAC UBL VGF proSAAS |
| Subtype auto_annotation | INT-SST |
| Transferred MTG Label | None |
| Top three regions | Cerebral cortex: 95.4%, Hippocampus: 1.5%, Basal forebrain: 1.2% |
| Top three dissections | Human M1C: 10.0%, Human MTG: 6.9%, Human A29-A30: 5.1% |
| Top Enriched Genes | AC022905.1, NMU, MAFB, SCARA5, PRDM1, TRBC2, MYO5B, PDCL2, BLM, PNOC |
| Number of cells | 6114.0 |
| DoubletFinder score | 0.036118617 |
| Total UMI | 14793.0682 |
| Fraction unspliced | 0.692877688 |
| Fraction mitochondrial | 0.008553714 |
| H19.30.002 | 1782.0 |
| H19.30.001 | 1840.0 |
| H18.30.002 | 2261.0 |
| H18.30.001 | 231.0 |
| Fraction cells from top donor | 0.369807 |
| Number of donors | 4.0 |
| subcluster_id | None |