CS202210140_238
Splat_237 (CS202210140_238)
Hierarchy: CS202210140_483 > CS202210140_238
PURL: https://purl.brain-bican.org/taxonomy/CS202210140/CS202210140_neurons/CS202210140_238
Labelset: Cluster (Rank: 1)
Parent Cell Set: Splatter (CS202210140_483)
Cell Ontology Term: sst GABAergic cortical interneuron (CL:4023017)
Rationale: Exclude ADARB2 because SST is expressed in some LAMP5-LHX6 interneurons
| Rationale DOIs |
|---|
| https://doi.org/10.1038/s41586-020-2781-z |
| Marker Genes |
|---|
| FOXG1 |
| NR2F1 |
| DLX1 |
| LHX6 |
| GAD2 |
| SST |
Author annotation fields:
| Author annotation | Value |
|---|---|
| Cluster ID | 237 |
| Class auto_annotation | NEUR |
| Neurotransmitter auto_annotation | GABA |
| Neuropeptide auto_annotation | CCK CHGA CHGB CORT IGF NAMPT NMU NPPC NUCB NXPH PTHLH SCG SST TAC UBL VGF proSAAS |
| Subtype auto_annotation | INT-SST |
| Transferred MTG Label | None |
| Top three regions | Amygdala: 57.4%, Cerebral cortex: 20.2%, Basal forebrain: 8.4% |
| Top three dissections | Human BL: 16.0%, Human CMN: 13.9%, Human CEN: 8.6% |
| Top Enriched Genes | FBN2, LHX6, PDGFD, SNTG2, SOX6, CDCA7, AKR1C8P, AC022905.1, IGFBP4, AP002989.1 |
| Number of cells | 2234.0 |
| DoubletFinder score | 0.058188397 |
| Total UMI | 24975.86437 |
| Fraction unspliced | 0.736406458 |
| Fraction mitochondrial | 0.008421906 |
| H19.30.002 | 765.0 |
| H19.30.001 | 541.0 |
| H18.30.002 | 918.0 |
| H18.30.001 | 10.0 |
| Fraction cells from top donor | 0.410922113 |
| Number of donors | 4.0 |
| subcluster_id | None |