CS202210140_236
Splat_235 (CS202210140_236)
Hierarchy: CS202210140_483 > CS202210140_236
PURL: https://purl.brain-bican.org/taxonomy/CS202210140/CS202210140_neurons/CS202210140_236
Labelset: Cluster (Rank: 1)
Parent Cell Set: Splatter (CS202210140_483)
Cell Ontology Term: long-range projecting sst GABAergic cortical interneuron (Mmus) (CL:4023025)
Rationale: CORT is more specifically enriched in the neuronal cluster with the high NOS1 and NPY expression. Without CORT, also labels some AVP+ neurons with low NOS1 and NPY expression.
| Marker Genes |
|---|
| DLX1 |
| SST |
| CHODL |
| TACR1 |
| NPY |
| NOS1 |
| CORT |
Author annotation fields:
| Author annotation | Value |
|---|---|
| Cluster ID | 235 |
| Class auto_annotation | NEUR |
| Neurotransmitter auto_annotation | GABA |
| Neuropeptide auto_annotation | CBLN CCK CHGA CHGB CORT IGF NAMPT NPY NUCB NXPH PNOC SCG SST TAC UBL VGF proSAAS |
| Subtype auto_annotation | INT-SST-CHODL |
| Transferred MTG Label | None |
| Top three regions | Cerebral cortex: 31.8%, Amygdala: 28.5%, Basal forebrain: 25.2% |
| Top three dissections | Human SI: 7.7%, Human CEN: 6.9%, Human Pu: 5.7% |
| Top Enriched Genes | NPY, CORT, SST, NOS1, AC005837.1, TLL2, CRHBP, TENT5A, TACR1, LHX6 |
| Number of cells | 3850.0 |
| DoubletFinder score | 0.080848471 |
| Total UMI | 21510.36597 |
| Fraction unspliced | 0.694128194 |
| Fraction mitochondrial | 0.008708052 |
| H19.30.002 | 1232.0 |
| H19.30.001 | 1403.0 |
| H18.30.002 | 1180.0 |
| H18.30.001 | 35.0 |
| Fraction cells from top donor | 0.364415584 |
| Number of donors | 4.0 |
| subcluster_id | None |