CS202210140_153
DLIT_152 (CS202210140_153)
Hierarchy: CS202210140_477 > CS202210140_153
PURL: https://purl.brain-bican.org/taxonomy/CS202210140/CS202210140_neurons/CS202210140_153
Labelset: Cluster (Rank: 1)
Parent Cell Set: Deep-layer intratelencephalic (CS202210140_477)
Cell Ontology Term:
Transferred annotations:
| Transferred cell label | Source taxonomy | Source node accession | Algorithm name | Comment |
|---|---|---|---|---|
| L6 IT Car3 | https://purl.brain-bican.org/taxonomy/AIT_MTG/AIT_MTG.json | CrossArea_subclass:bbbf984b37 | We performed PCA (50 components) on our full dataset, trained a random forest classifier (scikit-learn, class_ weight=‘balanced’, max_depth=50) on the MTG labels, and then predicted labels for all cells. We labeled each cluster with the mode of its constituent cells if two conditions were met: more than 0.8 of predicted labels matched the mode, and the mean probability of these pre- dictions was greater than 0.8. |
Author annotation fields:
| Author annotation | Value |
|---|---|
| Cluster ID | 152 |
| Class auto_annotation | NEUR |
| Neurotransmitter auto_annotation | VGLUT1 VGLUT2 VGLUT3 |
| Neuropeptide auto_annotation | CBLN CCK CHGA CHGB NAMPT NUCB PYY SCG UBL UCN VGF proSAAS |
| Subtype auto_annotation | None |
| Transferred MTG Label | L6 IT Car3 |
| Top three regions | Basal forebrain: 76.2%, Amygdala: 19.9%, Cerebral cortex: 3.8% |
| Top three dissections | Human Cla: 70.7%, Human CEN: 17.6%, Human Pu: 5.6% |
| Top Enriched Genes | AC012593.2, ANXA1, SMIM32, LINC01876, AC074099.1, LINC02505, AC112481.2, PLA2G4A, SMYD1, AL136119.1 |
| Number of cells | 6048.0 |
| DoubletFinder score | 0.039769845 |
| Total UMI | 38763.39683 |
| Fraction unspliced | 0.74330317 |
| Fraction mitochondrial | 0.00748168 |
| H19.30.002 | 1962.0 |
| H19.30.001 | 2105.0 |
| H18.30.002 | 1921.0 |
| H18.30.001 | 60.0 |
| Fraction cells from top donor | 0.348048942 |
| Number of donors | 4.0 |
| subcluster_id | None |