CS202210140_152
DLIT_151 (CS202210140_152)
Hierarchy: CS202210140_477 > CS202210140_152
PURL: https://purl.brain-bican.org/taxonomy/CS202210140/CS202210140_neurons/CS202210140_152
Labelset: Cluster (Rank: 1)
Parent Cell Set: Deep-layer intratelencephalic (CS202210140_477)
Cell Ontology Term:
Transferred annotations:
| Transferred cell label | Source taxonomy | Source node accession | Algorithm name | Comment |
|---|---|---|---|---|
| L6 IT Car3 | https://purl.brain-bican.org/taxonomy/AIT_MTG/AIT_MTG.json | CrossArea_subclass:bbbf984b37 | We performed PCA (50 components) on our full dataset, trained a random forest classifier (scikit-learn, class_ weight=‘balanced’, max_depth=50) on the MTG labels, and then predicted labels for all cells. We labeled each cluster with the mode of its constituent cells if two conditions were met: more than 0.8 of predicted labels matched the mode, and the mean probability of these pre- dictions was greater than 0.8. |
Author annotation fields:
| Author annotation | Value |
|---|---|
| Cluster ID | 151 |
| Class auto_annotation | NEUR |
| Neurotransmitter auto_annotation | VGLUT1 VGLUT2 VGLUT3 |
| Neuropeptide auto_annotation | CBLN CCK CHGA CHGB NAMPT NUCB PYY SCG UBL VGF proSAAS |
| Subtype auto_annotation | None |
| Transferred MTG Label | L6 IT Car3 |
| Top three regions | Cerebral cortex: 44.8%, Amygdala: 33.6%, Basal forebrain: 21.4% |
| Top three dissections | Human Cla: 20.0%, Human CEN: 18.2%, Human Pir: 10.5% |
| Top Enriched Genes | SMYD1, AC073225.1, AL136119.1, AL512452.1, ATP10A, NTNG2, CCN4, SMIM32, THEMIS, STPG2-AS1 |
| Number of cells | 18750.0 |
| DoubletFinder score | 0.029698063 |
| Total UMI | 34872.03669 |
| Fraction unspliced | 0.758248049 |
| Fraction mitochondrial | 0.00567415 |
| H19.30.002 | 4658.0 |
| H19.30.001 | 8115.0 |
| H18.30.002 | 5527.0 |
| H18.30.001 | 450.0 |
| Fraction cells from top donor | 0.4328 |
| Number of donors | 4.0 |
| subcluster_id | None |