CS202210140_150
DLIT_149 (CS202210140_150)
Hierarchy: CS202210140_477 > CS202210140_150
PURL: https://purl.brain-bican.org/taxonomy/CS202210140/CS202210140_neurons/CS202210140_150
Labelset: Cluster (Rank: 1)
Parent Cell Set: Deep-layer intratelencephalic (CS202210140_477)
Cell Ontology Term:
Transferred annotations:
| Transferred cell label | Source taxonomy | Source node accession | Algorithm name | Comment |
|---|---|---|---|---|
| L6 IT | https://purl.brain-bican.org/taxonomy/AIT_MTG/AIT_MTG.json | CrossArea_subclass:d6ef7e7411 | We performed PCA (50 components) on our full dataset, trained a random forest classifier (scikit-learn, class_ weight=‘balanced’, max_depth=50) on the MTG labels, and then predicted labels for all cells. We labeled each cluster with the mode of its constituent cells if two conditions were met: more than 0.8 of predicted labels matched the mode, and the mean probability of these pre- dictions was greater than 0.8. |
Author annotation fields:
| Author annotation | Value |
|---|---|
| Cluster ID | 149 |
| Class auto_annotation | NEUR |
| Neurotransmitter auto_annotation | VGLUT1 |
| Neuropeptide auto_annotation | ADCYAP CBLN CCK CHGA CHGB NAMPT NUCB SCG UBL UCN VGF proSAAS |
| Subtype auto_annotation | None |
| Transferred MTG Label | L6 IT |
| Top three regions | Cerebral cortex: 98.6%, Basal forebrain: 0.6%, Hippocampus: 0.5% |
| Top three dissections | Human M1C: 24.6%, Human MTG: 8.2%, Human S1C: 6.3% |
| Top Enriched Genes | THEMIS, LINC00343, AL356432.3, SH2D1B, AC011754.1, AC099517.1, ISLR, MIR3976HG, AC079380.1, AL117329.1 |
| Number of cells | 31428.0 |
| DoubletFinder score | 0.026414231 |
| Total UMI | 29943.22875 |
| Fraction unspliced | 0.709564845 |
| Fraction mitochondrial | 0.005135723 |
| H19.30.002 | 8138.0 |
| H19.30.001 | 9131.0 |
| H18.30.002 | 10473.0 |
| H18.30.001 | 3686.0 |
| Fraction cells from top donor | 0.333237877 |
| Number of donors | 4.0 |
| subcluster_id | None |