CS202210140_144
DLIT_143 (CS202210140_144)
Hierarchy: CS202210140_477 > CS202210140_144
PURL: https://purl.brain-bican.org/taxonomy/CS202210140/CS202210140_neurons/CS202210140_144
Labelset: Cluster (Rank: 1)
Parent Cell Set: Deep-layer intratelencephalic (CS202210140_477)
Cell Ontology Term:
Transferred annotations:
| Transferred cell label | Source taxonomy | Source node accession | Algorithm name | Comment |
|---|---|---|---|---|
| L5 IT | https://purl.brain-bican.org/taxonomy/AIT_MTG/AIT_MTG.json | CrossArea_subclass:c6694cb883 | We performed PCA (50 components) on our full dataset, trained a random forest classifier (scikit-learn, class_ weight=‘balanced’, max_depth=50) on the MTG labels, and then predicted labels for all cells. We labeled each cluster with the mode of its constituent cells if two conditions were met: more than 0.8 of predicted labels matched the mode, and the mean probability of these pre- dictions was greater than 0.8. |
Author annotation fields:
| Author annotation | Value |
|---|---|
| Cluster ID | 143 |
| Class auto_annotation | NEUR |
| Neurotransmitter auto_annotation | VGLUT1 |
| Neuropeptide auto_annotation | CBLN CCK CHGA CHGB NAMPT NUCB SCG UBL UCN VGF proSAAS |
| Subtype auto_annotation | None |
| Transferred MTG Label | L5 IT |
| Top three regions | Cerebral cortex: 89.0%, Basal forebrain: 4.2%, Amygdala: 4.2% |
| Top three dissections | Human MEC: 14.2%, Human ACC: 10.5%, Human A38: 9.9% |
| Top Enriched Genes | AC021134.1, Z68323.1, AL033539.2, AC079052.1, AC021134.2, LINC01821, TRABD2A, LINC01606, ADTRP, LINC01320 |
| Number of cells | 13468.0 |
| DoubletFinder score | 0.038692578 |
| Total UMI | 44976.77287 |
| Fraction unspliced | 0.755768804 |
| Fraction mitochondrial | 0.00344533 |
| H19.30.002 | 3683.0 |
| H19.30.001 | 4143.0 |
| H18.30.002 | 5165.0 |
| H18.30.001 | 477.0 |
| Fraction cells from top donor | 0.383501634 |
| Number of donors | 4.0 |
| subcluster_id | None |