CS202210140_142
DLIT_141 (CS202210140_142)
Hierarchy: CS202210140_477 > CS202210140_142
PURL: https://purl.brain-bican.org/taxonomy/CS202210140/CS202210140_neurons/CS202210140_142
Labelset: Cluster (Rank: 1)
Parent Cell Set: Deep-layer intratelencephalic (CS202210140_477)
Cell Ontology Term:
Transferred annotations:
| Transferred cell label | Source taxonomy | Source node accession | Algorithm name | Comment |
|---|---|---|---|---|
| L4 IT | https://purl.brain-bican.org/taxonomy/AIT_MTG/AIT_MTG.json | CrossArea_subclass:0533b137f6 | We performed PCA (50 components) on our full dataset, trained a random forest classifier (scikit-learn, class_ weight=‘balanced’, max_depth=50) on the MTG labels, and then predicted labels for all cells. We labeled each cluster with the mode of its constituent cells if two conditions were met: more than 0.8 of predicted labels matched the mode, and the mean probability of these pre- dictions was greater than 0.8. |
Author annotation fields:
| Author annotation | Value |
|---|---|
| Cluster ID | 141 |
| Class auto_annotation | NEUR |
| Neurotransmitter auto_annotation | VGLUT1 VGLUT2 |
| Neuropeptide auto_annotation | CCK CHGA CHGB NAMPT NUCB PDYN SCG UBL VGF proSAAS |
| Subtype auto_annotation | None |
| Transferred MTG Label | L4 IT |
| Top three regions | Cerebral cortex: 95.4%, Basal forebrain: 2.0%, Hippocampus: 1.4% |
| Top three dissections | Human MTG: 7.9%, Human Ig: 6.0%, Human TF: 5.7% |
| Top Enriched Genes | AP003066.1, AC080079.2, BARX2, LINC01680, AL033539.2, AL353709.1, AL138927.1, AC073091.1, AC073091.2, TRABD2A |
| Number of cells | 9992.0 |
| DoubletFinder score | 0.022691433 |
| Total UMI | 19747.71077 |
| Fraction unspliced | 0.674918596 |
| Fraction mitochondrial | 0.007554783 |
| H19.30.002 | 2896.0 |
| H19.30.001 | 3058.0 |
| H18.30.002 | 3702.0 |
| H18.30.001 | 336.0 |
| Fraction cells from top donor | 0.370496397 |
| Number of donors | 4.0 |
| subcluster_id | None |