CS202210140_140
DLIT_139 (CS202210140_140)
Hierarchy: CS202210140_477 > CS202210140_140
PURL: https://purl.brain-bican.org/taxonomy/CS202210140/CS202210140_neurons/CS202210140_140
Labelset: Cluster (Rank: 1)
Parent Cell Set: Deep-layer intratelencephalic (CS202210140_477)
Cell Ontology Term:
Transferred annotations:
| Transferred cell label | Source taxonomy | Source node accession | Algorithm name | Comment |
|---|---|---|---|---|
| L5 IT | https://purl.brain-bican.org/taxonomy/AIT_MTG/AIT_MTG.json | CrossArea_subclass:c6694cb883 | We performed PCA (50 components) on our full dataset, trained a random forest classifier (scikit-learn, class_ weight=‘balanced’, max_depth=50) on the MTG labels, and then predicted labels for all cells. We labeled each cluster with the mode of its constituent cells if two conditions were met: more than 0.8 of predicted labels matched the mode, and the mean probability of these pre- dictions was greater than 0.8. |
Author annotation fields:
| Author annotation | Value |
|---|---|
| Cluster ID | 139 |
| Class auto_annotation | NEUR |
| Neurotransmitter auto_annotation | VGLUT1 VGLUT2 |
| Neuropeptide auto_annotation | CBLN CCK CHGA CHGB NAMPT NUCB SCG UBL UCN VGF proSAAS |
| Subtype auto_annotation | None |
| Transferred MTG Label | L5 IT |
| Top three regions | Cerebral cortex: 95.2%, Basal forebrain: 1.9%, Hippocampus: 1.5% |
| Top three dissections | Human MTG: 12.0%, Human M1C: 7.8%, Human A43: 4.4% |
| Top Enriched Genes | AC016687.2, AC016687.3, AP003066.1, AL033539.2, AC099517.1, AC073578.2, Z68323.1, AC060765.2, AC021134.1, RCSD1 |
| Number of cells | 24657.0 |
| DoubletFinder score | 0.026565668 |
| Total UMI | 23385.0842 |
| Fraction unspliced | 0.689132591 |
| Fraction mitochondrial | 0.007590162 |
| H19.30.002 | 6690.0 |
| H19.30.001 | 7447.0 |
| H18.30.002 | 9361.0 |
| H18.30.001 | 1159.0 |
| Fraction cells from top donor | 0.379648781 |
| Number of donors | 4.0 |
| subcluster_id | None |